Guide to the Human Genome
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Name: LOC100132168 Sequence: fasta or formatted (147aa) NCBI GI: 169165075
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            23.8         35           2
 C cysteine            0.0          0           0
 D aspartate           0.0          0           0
 E glutamate           6.8         10           2
 F phenylalanine       1.4          2           1
 G glycine            12.9         19           3
 H histidine           3.4          5           1
 I isoleucine          0.7          1           1
 K lysine              0.0          0           0
 L leucine            12.9         19           2
 M methionine          0.7          1           1
 N asparagine          0.7          1           1
 P proline             4.1          6           1
 Q glutamine           8.8         13           2
 R arginine            8.8         13           2
 S serine              1.4          2           1
 T threonine           0.7          1           1
 V valine             10.2         15           1
 W tryptophan          2.7          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293652          0.205   PREDICTED: hypothetical protein 
LOC100291016          0.205   PREDICTED: hypothetical protein XP_002347804 
LOC100287809          0.205   PREDICTED: hypothetical protein XP_002343597 
LOC100293741          0.038   PREDICTED: hypothetical protein 
LOC100290304          0.038   PREDICTED: hypothetical protein XP_002347738 
LOC100292754          0.034   PREDICTED: hypothetical protein 
LOC100290764          0.034   PREDICTED: hypothetical protein XP_002346421 
LOC100287607          0.034   PREDICTED: hypothetical protein XP_002342119 
A1CF                  0.027   apobec-1 complementation factor isoform 3 
A1CF                  0.027   apobec-1 complementation factor isoform 2 
A1CF                  0.027   apobec-1 complementation factor isoform 1 
PKN1                  0.027   protein kinase N1 isoform 1 
PKN1                  0.027   protein kinase N1 isoform 2 
FNIP2                 0.019   folliculin interacting protein 2 
EID2                  0.019   CREBBP/EP300 inhibitor 2 
LOC100289572          0.019   PREDICTED: hypothetical protein 
LOC100291455          0.019   PREDICTED: hypothetical protein XP_002346892 
LOC100289572          0.019   PREDICTED: hypothetical protein XP_002343123 
LOC100288744          0.019   PREDICTED: hypothetical protein XP_002342752 
LOC100288744          0.019   PREDICTED: hypothetical protein 
GRIN2D                0.019   N-methyl-D-aspartate receptor subunit 2D precursor ...
LOC100293110          0.015   PREDICTED: hypothetical protein 
LOC100130128          0.015   PREDICTED: hypothetical protein 
LOC100130128          0.015   PREDICTED: hypothetical protein 
LOC100130128          0.015   PREDICTED: hypothetical protein 
LOC100292722          0.011   PREDICTED: hypothetical protein 
LOC100290946          0.011   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.011   PREDICTED: hypothetical protein XP_002344246 
PHF1                  0.011   PHD finger protein 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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