Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169164474
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169164474 PREDICTED: hypothetical protein [Homo sapiens]
(259 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169164474 PREDICTED: hypothetical protein [Homo sapiens] 554 e-158
gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo sap... 554 e-158
gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo sap... 554 e-158
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 49 3e-06
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ... 49 6e-06
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 42 7e-04
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 42 7e-04
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 42 7e-04
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 42 7e-04
gi|239753274 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 40 0.003
gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 40 0.003
gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo ... 39 0.005
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 39 0.006
gi|23821044 zinc finger/RING finger 2 [Homo sapiens] 39 0.006
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 39 0.006
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 38 0.008
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 38 0.008
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 38 0.008
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 37 0.013
gi|9966841 cell death regulator aven [Homo sapiens] 37 0.013
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.022
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.022
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.022
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.022
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 37 0.022
gi|71274109 nuclear factor of kappa light polypeptide gene enhan... 36 0.029
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 36 0.038
>gi|169164474 PREDICTED: hypothetical protein [Homo sapiens]
Length = 259
Score = 554 bits (1427), Expect = e-158
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MEKAGSDIIAHNTVVTSKYNDDDRIVEGLAIRKSKRKGNTDKNLKRSRTPGTWCRVREGE 60
MEKAGSDIIAHNTVVTSKYNDDDRIVEGLAIRKSKRKGNTDKNLKRSRTPGTWCRVREGE
Sbjct: 1 MEKAGSDIIAHNTVVTSKYNDDDRIVEGLAIRKSKRKGNTDKNLKRSRTPGTWCRVREGE 60
Query: 61 AEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALA 120
AEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALA
Sbjct: 61 AEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALA 120
Query: 121 GPLPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRDLWGGRESLRVPFQ 180
GPLPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRDLWGGRESLRVPFQ
Sbjct: 121 GPLPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRDLWGGRESLRVPFQ 180
Query: 181 PTWSWDTPPRNLVGTAQGIPAAGFWPQHALRQPGERPCGLQVPVGCVRRGQKNHVFFQSG 240
PTWSWDTPPRNLVGTAQGIPAAGFWPQHALRQPGERPCGLQVPVGCVRRGQKNHVFFQSG
Sbjct: 181 PTWSWDTPPRNLVGTAQGIPAAGFWPQHALRQPGERPCGLQVPVGCVRRGQKNHVFFQSG 240
Query: 241 APFGCLFTKRFRSRKKIHC 259
APFGCLFTKRFRSRKKIHC
Sbjct: 241 APFGCLFTKRFRSRKKIHC 259
>gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo
sapiens]
Length = 259
Score = 554 bits (1427), Expect = e-158
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MEKAGSDIIAHNTVVTSKYNDDDRIVEGLAIRKSKRKGNTDKNLKRSRTPGTWCRVREGE 60
MEKAGSDIIAHNTVVTSKYNDDDRIVEGLAIRKSKRKGNTDKNLKRSRTPGTWCRVREGE
Sbjct: 1 MEKAGSDIIAHNTVVTSKYNDDDRIVEGLAIRKSKRKGNTDKNLKRSRTPGTWCRVREGE 60
Query: 61 AEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALA 120
AEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALA
Sbjct: 61 AEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALA 120
Query: 121 GPLPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRDLWGGRESLRVPFQ 180
GPLPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRDLWGGRESLRVPFQ
Sbjct: 121 GPLPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRDLWGGRESLRVPFQ 180
Query: 181 PTWSWDTPPRNLVGTAQGIPAAGFWPQHALRQPGERPCGLQVPVGCVRRGQKNHVFFQSG 240
PTWSWDTPPRNLVGTAQGIPAAGFWPQHALRQPGERPCGLQVPVGCVRRGQKNHVFFQSG
Sbjct: 181 PTWSWDTPPRNLVGTAQGIPAAGFWPQHALRQPGERPCGLQVPVGCVRRGQKNHVFFQSG 240
Query: 241 APFGCLFTKRFRSRKKIHC 259
APFGCLFTKRFRSRKKIHC
Sbjct: 241 APFGCLFTKRFRSRKKIHC 259
>gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 259
Score = 554 bits (1427), Expect = e-158
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MEKAGSDIIAHNTVVTSKYNDDDRIVEGLAIRKSKRKGNTDKNLKRSRTPGTWCRVREGE 60
MEKAGSDIIAHNTVVTSKYNDDDRIVEGLAIRKSKRKGNTDKNLKRSRTPGTWCRVREGE
Sbjct: 1 MEKAGSDIIAHNTVVTSKYNDDDRIVEGLAIRKSKRKGNTDKNLKRSRTPGTWCRVREGE 60
Query: 61 AEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALA 120
AEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALA
Sbjct: 61 AEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALA 120
Query: 121 GPLPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRDLWGGRESLRVPFQ 180
GPLPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRDLWGGRESLRVPFQ
Sbjct: 121 GPLPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRDLWGGRESLRVPFQ 180
Query: 181 PTWSWDTPPRNLVGTAQGIPAAGFWPQHALRQPGERPCGLQVPVGCVRRGQKNHVFFQSG 240
PTWSWDTPPRNLVGTAQGIPAAGFWPQHALRQPGERPCGLQVPVGCVRRGQKNHVFFQSG
Sbjct: 181 PTWSWDTPPRNLVGTAQGIPAAGFWPQHALRQPGERPCGLQVPVGCVRRGQKNHVFFQSG 240
Query: 241 APFGCLFTKRFRSRKKIHC 259
APFGCLFTKRFRSRKKIHC
Sbjct: 241 APFGCLFTKRFRSRKKIHC 259
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 49.3 bits (116), Expect = 3e-06
Identities = 60/178 (33%), Positives = 66/178 (37%), Gaps = 28/178 (15%)
Query: 59 GEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGG-----------CARATRGGDLG 107
G E V GG R G GGG G RR A R GG AR
Sbjct: 97 GILEGGPQVAARGGGR-GWEGGGLGARRAVTAARRGGASRPLAGEPWREAARRRPQQCPQ 155
Query: 108 WAVALPHRPSALAGP----LPSQTAERQ--ARPLVRELGRGSAAAGCPSLPGATTPRPR- 160
W A R +ALA P P+ A R R R+ GR +A G GA PR
Sbjct: 156 WGRARESRSAALASPRVSNAPTTPASRNPGLRAQERQSGRRAAGGG-----GARAEPPRV 210
Query: 161 RCCVPRDLWGGRESLRVP-FQPTWSWDTPPRNLVGTAQGIPAAGFWPQHALRQPGERP 217
C P GG S R P + PP GTA PAAG H LR P + P
Sbjct: 211 PPCRPAGCSGGNRSRRAAGAGPRTTRRKPPPRPPGTA---PAAGLRSVHLLRIPYKEP 265
>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
sapiens]
Length = 224
Score = 48.5 bits (114), Expect = 6e-06
Identities = 57/167 (34%), Positives = 63/167 (37%), Gaps = 29/167 (17%)
Query: 59 GEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSA 118
G E V GG R G GGG G RR A R G W A R +A
Sbjct: 49 GILEGGPQVAARGGGR-GWEGGGLGARRAVTAARRG------------EWGRARESRSAA 95
Query: 119 LAGP----LPSQTAERQ--ARPLVRELGRGSAAAGCPSLPGATTPRPR-RCCVPRDLWGG 171
LA P P+ A R R R+ GR +A G GA PR C P GG
Sbjct: 96 LASPRVSNAPTTPASRNPGLRAQERQSGRRAAGGG-----GARAEPPRVPPCRPAGCSGG 150
Query: 172 RESLRVP-FQPTWSWDTPPRNLVGTAQGIPAAGFWPQHALRQPGERP 217
S R P + PP GTA PAAG H LR P + P
Sbjct: 151 NRSRRAAGAGPRTTRRKPPPRPPGTA---PAAGLRSVHLLRIPYKEP 194
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 41.6 bits (96), Expect = 7e-04
Identities = 36/96 (37%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 48 RTPGTWCRVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRG-GDL 106
R PG W V AE A G A +G G GA G A+ GGG T G
Sbjct: 21 RAPGAW--VLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTK 78
Query: 107 GWAVALPHRPSALAGPLPSQTAERQARPLVRELGRG 142
G ALP RP++ A P P E + PL E RG
Sbjct: 79 GSGAALPSRPASRAAPRP----EASSPPLPLEKARG 110
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 41.6 bits (96), Expect = 7e-04
Identities = 36/96 (37%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 48 RTPGTWCRVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRG-GDL 106
R PG W V AE A G A +G G GA G A+ GGG T G
Sbjct: 21 RAPGAW--VLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTK 78
Query: 107 GWAVALPHRPSALAGPLPSQTAERQARPLVRELGRG 142
G ALP RP++ A P P E + PL E RG
Sbjct: 79 GSGAALPSRPASRAAPRP----EASSPPLPLEKARG 110
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 41.6 bits (96), Expect = 7e-04
Identities = 36/96 (37%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 48 RTPGTWCRVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRG-GDL 106
R PG W V AE A G A +G G GA G A+ GGG T G
Sbjct: 21 RAPGAW--VLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTK 78
Query: 107 GWAVALPHRPSALAGPLPSQTAERQARPLVRELGRG 142
G ALP RP++ A P P E + PL E RG
Sbjct: 79 GSGAALPSRPASRAAPRP----EASSPPLPLEKARG 110
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 41.6 bits (96), Expect = 7e-04
Identities = 36/96 (37%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 48 RTPGTWCRVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRG-GDL 106
R PG W V AE A G A +G G GA G A+ GGG T G
Sbjct: 21 RAPGAW--VLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTK 78
Query: 107 GWAVALPHRPSALAGPLPSQTAERQARPLVRELGRG 142
G ALP RP++ A P P E + PL E RG
Sbjct: 79 GSGAALPSRPASRAAPRP----EASSPPLPLEKARG 110
>gi|239753274 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 40.8 bits (94), Expect = 0.001
Identities = 40/119 (33%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 63 PARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALAGP 122
P RS CG G S R GG T+ G CA A+ G LG A AG
Sbjct: 27 PERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCA-ASGGSRLG---DQRQEVRAAAGQ 82
Query: 123 LPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRD-----LWGGRESLR 176
+P + R+AR +L +A A P PG R C P D L+ GRE +R
Sbjct: 83 VPGEAGARRARSSA-QLASRTAPAAPPCAPGLLASR----CPPEDSAGPFLFLGREHVR 136
>gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 563
Score = 39.7 bits (91), Expect = 0.003
Identities = 33/96 (34%), Positives = 38/96 (39%), Gaps = 18/96 (18%)
Query: 55 RVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPH 114
R + AEPAR+ CG RPG A RR R GGG ARA G
Sbjct: 9 RAPQAAAEPARAPCG-ARTPGTRPGTRASSRRLHACARAGGGGARAAGAG-------FAE 60
Query: 115 RPSALAGPLPSQTAERQARPLVRELGRGSAAAGCPS 150
R +A A P S + GR AA CP+
Sbjct: 61 RRAAAAEPDVS----------AKMAGRSMQAARCPT 86
>gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 405
Score = 39.7 bits (91), Expect = 0.003
Identities = 33/96 (34%), Positives = 38/96 (39%), Gaps = 18/96 (18%)
Query: 55 RVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPH 114
R + AEPAR+ CG RPG A RR R GGG ARA G
Sbjct: 9 RAPQAAAEPARAPCG-ARTPGTRPGTRASSRRLHACARAGGGGARAAGAG-------FAE 60
Query: 115 RPSALAGPLPSQTAERQARPLVRELGRGSAAAGCPS 150
R +A A P S + GR AA CP+
Sbjct: 61 RRAAAAEPDVS----------AKMAGRSMQAARCPT 86
>gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo
sapiens]
Length = 263
Score = 38.9 bits (89), Expect = 0.005
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 63 PARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALAGP 122
P RS CG G S R GG T+ G CA A+ G LG A AG
Sbjct: 27 PERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCA-ASGGSRLG---DQRQEVRAAAGQ 82
Query: 123 LPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRDLWG 170
+P + R+AR +L +A A P PG R C P D G
Sbjct: 83 VPGEAGARRARSSA-QLASRTAPAAPPCAPGLLASR----CPPEDSAG 125
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 38.9 bits (89), Expect = 0.005
Identities = 40/116 (34%), Positives = 44/116 (37%), Gaps = 15/116 (12%)
Query: 45 KRSRTPGTWCRVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGG 104
K R PG RVR +A R GGAR RP GA G RA RGG A
Sbjct: 42 KGQRPPGPG-RVRAAQARARRG----GGARE-RPAEGARG---PRAARGGARAAPMPSSA 92
Query: 105 DLGWAVALPHRPSALAGPLPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPR 160
G RPS+ PL QA +GR A PS T +PR
Sbjct: 93 PRGPTEPALRRPSSAERPLA------QAPSSSASVGRAPGAMASPSRSSEATGKPR 142
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 38.5 bits (88), Expect = 0.006
Identities = 73/226 (32%), Positives = 86/226 (38%), Gaps = 31/226 (13%)
Query: 24 RIVEGL-AIRKS-KRKG-NTDKNLKRSRTPGTWCRVREGEAEPARSVCGWGGARSGRPGG 80
R+ EG A+R S KR+G RSR G R G A P GWGG + R G
Sbjct: 133 RLREGRGAVRGSGKRRGWGLRPQRVRSRLAGLGAP-RGGAAAPR----GWGGQGAERLGV 187
Query: 81 GAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALAGP--LPSQTAERQARPLVRE 138
G A RGGGG + GG A P P A P P R R
Sbjct: 188 HQPGLPTHAALRGGGGGSEGGGGG------ARPSPPRARQPPSGRPRPRRTRLLGSAERH 241
Query: 139 LGRGSAAA-GCPSLPGATTPRPRRCCVPRDLWGGRESLRVPFQPTWSWDTPPRNLVGTAQ 197
GR + A G S P A R G S+ +PT R G A+
Sbjct: 242 TGRAALARHGQLSRPHAAVRNSSRG------RGAATSVSAAARPTRGGARGHRRADGRAR 295
Query: 198 GIPAAGFWPQHALRQPGERPCGLQVPVGCVRRGQKNHVFFQSGAPF 243
G A Q P P GLQ G R+G++N F+SGAPF
Sbjct: 296 GGCA-----QLRAGTP-SAPGGLQDCRG--RQGEENAHPFRSGAPF 333
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 38.5 bits (88), Expect = 0.006
Identities = 46/149 (30%), Positives = 58/149 (38%), Gaps = 30/149 (20%)
Query: 93 GGGGCARATRGGDLGWAVALPHRPSALAGPL-----PSQTAERQARPLVRELGRGSAAAG 147
GG G RA G + V +P P+ LAGP+ PSQ + P R +AAA
Sbjct: 102 GGPGIGRAA-GRGIPAGVPMPQAPAGLAGPVRGVGGPSQ---QVMTPQGRGTVAAAAAAA 157
Query: 148 CPSLPGATTPRP----------RRCCVPRDLWGGRESLRVPFQPTWSWDTPPRNLVGTAQ 197
S+ GA T P R P + G +R P P PP GT
Sbjct: 158 TASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG--IPPGR--GTPM 213
Query: 198 GIPAAGFWPQHALRQPGER---PCGLQVP 223
G+P G P PG R P G++ P
Sbjct: 214 GMPPPGMRPP----PPGMRGPPPPGMRPP 238
>gi|23821044 zinc finger/RING finger 2 [Homo sapiens]
Length = 242
Score = 38.5 bits (88), Expect = 0.006
Identities = 43/134 (32%), Positives = 57/134 (42%), Gaps = 22/134 (16%)
Query: 75 SGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALAGPLPSQTA-ERQAR 133
S P +GG A T GGGG ARA G V H+PSA G + A A
Sbjct: 21 SDLPSSSSGG---ANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAAPAAPAA 77
Query: 134 PLVRELGR--GSAAAGCP------SLPGATT-PRPRRCCV---PRDLWGGRESLRVPFQP 181
P R LG GS A+G S+P +++ P + V P D GGR+ +P
Sbjct: 78 PRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSSPEDGGGGRD------RP 131
Query: 182 TWSWDTPPRNLVGT 195
PR ++G+
Sbjct: 132 VGGSPGGPRLVIGS 145
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 38.5 bits (88), Expect = 0.006
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 47 SRTPGTWCRVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRG--GGGCARATRGG 104
S +PG+ + + P+ S GG G GGG GGR + ++ G GGG + A R
Sbjct: 31 STSPGSSAPIAPSASSPSSSSNAGGGGGGGGGGGGGGGRSSSSSSSGSSGGGGSEAMR-- 88
Query: 105 DLGWAVALPHRPSALAGPLPSQTAER 130
LP PS + G L R
Sbjct: 89 ----RACLPTPPSNIFGGLDESLLAR 110
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 38.1 bits (87), Expect = 0.008
Identities = 64/201 (31%), Positives = 74/201 (36%), Gaps = 28/201 (13%)
Query: 46 RSRTPGTWCRVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGD 105
RSR G R G A P GWGG + R G G A RGGGG + GG
Sbjct: 158 RSRLAGLGAP-RGGAAAPR----GWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGG- 211
Query: 106 LGWAVALPHRPSALAGP--LPSQTAERQARPLVRELGRGSAAA-GCPSLPGATTPRPRRC 162
A P P A P P R R GR + A G S P A R
Sbjct: 212 -----ARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRG 266
Query: 163 CVPRDLWGGRESLRVPFQPTWSWDTPPRNLVGTAQGIPAAGFWPQHALRQPGERPCGLQV 222
G S+ +PT R G A+G A Q P P GLQ
Sbjct: 267 ------RGAATSVSAAARPTRGGARGHRRADGRARGGCA-----QLRAGTP-SAPGGLQD 314
Query: 223 PVGCVRRGQKNHVFFQSGAPF 243
G R+G++N F+SGAPF
Sbjct: 315 CRG--RQGEENAHPFRSGAPF 333
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 38.1 bits (87), Expect = 0.008
Identities = 64/201 (31%), Positives = 74/201 (36%), Gaps = 28/201 (13%)
Query: 46 RSRTPGTWCRVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGD 105
RSR G R G A P GWGG + R G G A RGGGG + GG
Sbjct: 158 RSRLAGLGAP-RGGAAAPR----GWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGG- 211
Query: 106 LGWAVALPHRPSALAGP--LPSQTAERQARPLVRELGRGSAAA-GCPSLPGATTPRPRRC 162
A P P A P P R R GR + A G S P A R
Sbjct: 212 -----ARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRG 266
Query: 163 CVPRDLWGGRESLRVPFQPTWSWDTPPRNLVGTAQGIPAAGFWPQHALRQPGERPCGLQV 222
G S+ +PT R G A+G A Q P P GLQ
Sbjct: 267 ------RGAATSVSAAARPTRGGARGHRRADGRARGGCA-----QLRAGTP-SAPGGLQD 314
Query: 223 PVGCVRRGQKNHVFFQSGAPF 243
G R+G++N F+SGAPF
Sbjct: 315 CRG--RQGEENAHPFRSGAPF 333
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 38.1 bits (87), Expect = 0.008
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 54 CRVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVA-- 111
C + A A + G+R G GGG GG GGGG A A G D G + A
Sbjct: 392 CHSSQSAAAAAAAAAAALGSRGGGGGGGGGGG-------GGGGGAGAGGGSDFGCSAAAP 444
Query: 112 ------LPHRPSALAGPLPSQTAERQARPLVR 137
LP+ + L+ S +R PL R
Sbjct: 445 RSESGFLPYSAAVLSKTAVSPPDQRDEAPLTR 476
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 37.4 bits (85), Expect = 0.013
Identities = 40/129 (31%), Positives = 50/129 (38%), Gaps = 23/129 (17%)
Query: 93 GGGGCARATRGGDLGWAVALPHRPSALAGPL-----PSQTAERQARPLVRELGRGSAAAG 147
GG G RA G + V +P P+ LAGP+ PSQ + P R +AAA
Sbjct: 102 GGPGIGRAA-GRGIPAGVPMPQAPAGLAGPVRGVGGPSQ---QVMTPQGRGTVAAAAAAA 157
Query: 148 CPSLPGATTPRP----------RRCCVPRDLWGGRESLRVPFQPTWSWDTPPRNLVGTAQ 197
S+ GA T P R P + G +R P P PP GT
Sbjct: 158 TASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG--IPPGR--GTPM 213
Query: 198 GIPAAGFWP 206
G+P G P
Sbjct: 214 GMPPPGMRP 222
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 37.4 bits (85), Expect = 0.013
Identities = 26/65 (40%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 45 KRSRTPGTWCRVREGEAEPARSVCGWGGARSGRPGGGAG-GRRCARATRGGGGCARATRG 103
+ S PG V G G GG GR G G G G R AR RGGGG R +R
Sbjct: 24 RHSERPGAAAAVARGGGG------GGGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRR 77
Query: 104 GDLGW 108
GW
Sbjct: 78 EPGGW 82
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.6 bits (83), Expect = 0.022
Identities = 44/146 (30%), Positives = 59/146 (40%), Gaps = 24/146 (16%)
Query: 93 GGGGCARATRGGDLGWAVALPHRPSALAGPL-----PSQ---TAERQARPLVRELGRGSA 144
GG G RA G + V +P P+ LAGP+ PSQ T + + + ++
Sbjct: 102 GGPGVGRAA-GRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATAS 160
Query: 145 AAGCPSL--PGATTPRP--RRCCVPRDLWGGRESLRVPFQPTWSWDTPPRNLVGTAQGIP 200
AG P+ PG TP P R P + +R P P PP GT G+P
Sbjct: 161 IAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIG--LPPAR--GTPIGMP 216
Query: 201 AAGFWPQHALRQPGER---PCGLQVP 223
G P PG R P G++ P
Sbjct: 217 PPGMRPP----PPGIRGPPPPGMRPP 238
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.6 bits (83), Expect = 0.022
Identities = 44/146 (30%), Positives = 59/146 (40%), Gaps = 24/146 (16%)
Query: 93 GGGGCARATRGGDLGWAVALPHRPSALAGPL-----PSQ---TAERQARPLVRELGRGSA 144
GG G RA G + V +P P+ LAGP+ PSQ T + + + ++
Sbjct: 102 GGPGVGRAA-GRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATAS 160
Query: 145 AAGCPSL--PGATTPRP--RRCCVPRDLWGGRESLRVPFQPTWSWDTPPRNLVGTAQGIP 200
AG P+ PG TP P R P + +R P P PP GT G+P
Sbjct: 161 IAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIG--LPPAR--GTPIGMP 216
Query: 201 AAGFWPQHALRQPGER---PCGLQVP 223
G P PG R P G++ P
Sbjct: 217 PPGMRPP----PPGIRGPPPPGMRPP 238
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.6 bits (83), Expect = 0.022
Identities = 44/146 (30%), Positives = 59/146 (40%), Gaps = 24/146 (16%)
Query: 93 GGGGCARATRGGDLGWAVALPHRPSALAGPL-----PSQ---TAERQARPLVRELGRGSA 144
GG G RA G + V +P P+ LAGP+ PSQ T + + + ++
Sbjct: 102 GGPGVGRAA-GRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATAS 160
Query: 145 AAGCPSL--PGATTPRP--RRCCVPRDLWGGRESLRVPFQPTWSWDTPPRNLVGTAQGIP 200
AG P+ PG TP P R P + +R P P PP GT G+P
Sbjct: 161 IAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIG--LPPAR--GTPIGMP 216
Query: 201 AAGFWPQHALRQPGER---PCGLQVP 223
G P PG R P G++ P
Sbjct: 217 PPGMRPP----PPGIRGPPPPGMRPP 238
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.6 bits (83), Expect = 0.022
Identities = 44/146 (30%), Positives = 59/146 (40%), Gaps = 24/146 (16%)
Query: 93 GGGGCARATRGGDLGWAVALPHRPSALAGPL-----PSQ---TAERQARPLVRELGRGSA 144
GG G RA G + V +P P+ LAGP+ PSQ T + + + ++
Sbjct: 102 GGPGVGRAA-GRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATAS 160
Query: 145 AAGCPSL--PGATTPRP--RRCCVPRDLWGGRESLRVPFQPTWSWDTPPRNLVGTAQGIP 200
AG P+ PG TP P R P + +R P P PP GT G+P
Sbjct: 161 IAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIG--LPPAR--GTPIGMP 216
Query: 201 AAGFWPQHALRQPGER---PCGLQVP 223
G P PG R P G++ P
Sbjct: 217 PPGMRPP----PPGIRGPPPPGMRPP 238
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.6 bits (83), Expect = 0.022
Identities = 44/146 (30%), Positives = 59/146 (40%), Gaps = 24/146 (16%)
Query: 93 GGGGCARATRGGDLGWAVALPHRPSALAGPL-----PSQ---TAERQARPLVRELGRGSA 144
GG G RA G + V +P P+ LAGP+ PSQ T + + + ++
Sbjct: 102 GGPGVGRAA-GRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATAS 160
Query: 145 AAGCPSL--PGATTPRP--RRCCVPRDLWGGRESLRVPFQPTWSWDTPPRNLVGTAQGIP 200
AG P+ PG TP P R P + +R P P PP GT G+P
Sbjct: 161 IAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIG--LPPAR--GTPIGMP 216
Query: 201 AAGFWPQHALRQPGER---PCGLQVP 223
G P PG R P G++ P
Sbjct: 217 PPGMRPP----PPGIRGPPPPGMRPP 238
>gi|71274109 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, epsilon [Homo sapiens]
Length = 500
Score = 36.2 bits (82), Expect = 0.029
Identities = 41/129 (31%), Positives = 48/129 (37%), Gaps = 39/129 (30%)
Query: 61 AEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCAR---------ATRGGDLGWAVA 111
AEP + G G SG AR RGGGG R A RGG WAV
Sbjct: 19 AEPGKGDSGGAGPLSGS----------ARRGRGGGGAIRVRRPCWSGGAGRGGGPAWAVR 68
Query: 112 LP------------HRPSALAGP----LPSQTAERQARPLVR---ELGRGSAAAGCPSLP 152
LP S AGP P + R RPL + + G+ + + P P
Sbjct: 69 LPTVTAGWTWPALRTLSSLRAGPSEPHSPGRRPPRAGRPLCQADPQPGKAARRSLEPD-P 127
Query: 153 GATTPRPRR 161
T PRP R
Sbjct: 128 AQTGPRPAR 136
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 35.8 bits (81), Expect = 0.038
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 138 ELGRGSAAAGCP--SLPGATTPRPRRCCVP-RDL--WGGRESLRVPFQPTWSWDTPPRNL 192
+L +G+ AG P +LP TT RP R L G ++ ++P W+WDTP
Sbjct: 892 DLAKGTTTAGVPGHTLPWRTTRRPGSSSPAIRRLPDTGSKDGYKLP----WTWDTPSGR- 946
Query: 193 VGTAQGIPAAG 203
G A+G P AG
Sbjct: 947 -GLAEGTPTAG 956
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,707,226
Number of Sequences: 37866
Number of extensions: 769058
Number of successful extensions: 5715
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 335
Number of HSP's that attempted gapping in prelim test: 4397
Number of HSP's gapped (non-prelim): 1182
length of query: 259
length of database: 18,247,518
effective HSP length: 100
effective length of query: 159
effective length of database: 14,460,918
effective search space: 2299285962
effective search space used: 2299285962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.