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Search of human proteins with 16753203
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens]
(589 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens] 1152 0.0
gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens] 1081 0.0
gi|16753207 ubiquilin 2 [Homo sapiens] 888 0.0
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 688 0.0
gi|8567418 ubiquilin 3 [Homo sapiens] 339 5e-93
gi|145580580 ubiquilin-like [Homo sapiens] 223 5e-58
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 53 9e-07
gi|41152107 ubiquitin-like 7 [Homo sapiens] 50 6e-06
gi|14249682 ubiquitin-like 7 [Homo sapiens] 50 6e-06
gi|67010025 Sp4 transcription factor [Homo sapiens] 48 3e-05
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 47 6e-05
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 46 1e-04
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 44 4e-04
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 44 4e-04
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 44 4e-04
gi|223555919 hepatocellular carcinoma related protein 1 isoform ... 44 5e-04
gi|189011568 adenomatous polyposis coli [Homo sapiens] 44 5e-04
gi|189011566 adenomatous polyposis coli [Homo sapiens] 44 5e-04
gi|53759122 adenomatous polyposis coli [Homo sapiens] 44 5e-04
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 42 0.002
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 41 0.003
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 41 0.003
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 41 0.003
gi|67191208 ubiquitin C [Homo sapiens] 41 0.003
gi|161019170 mucin 5AC [Homo sapiens] 41 0.004
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 41 0.004
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 41 0.004
gi|91982772 mucin 17 [Homo sapiens] 41 0.004
gi|11024714 ubiquitin B precursor [Homo sapiens] 40 0.005
gi|189181750 human immunodeficiency virus type I enhancer bindin... 40 0.005
>gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens]
Length = 589
Score = 1152 bits (2981), Expect = 0.0
Identities = 589/589 (100%), Positives = 589/589 (100%)
Query: 1 MAESGESGGPPGSQDSAAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQ 60
MAESGESGGPPGSQDSAAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQ
Sbjct: 1 MAESGESGGPPGSQDSAAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQ 60
Query: 61 FKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQT 120
FKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQT
Sbjct: 61 FKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQT 120
Query: 121 NTAGSNVTTSSTPNSNSTSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLL 180
NTAGSNVTTSSTPNSNSTSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLL
Sbjct: 121 NTAGSNVTTSSTPNSNSTSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLL 180
Query: 181 SNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLE 240
SNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLE
Sbjct: 181 SNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLE 240
Query: 241 LARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLV 300
LARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLV
Sbjct: 241 LARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLV 300
Query: 301 SNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTA 360
SNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTA
Sbjct: 301 SNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTA 360
Query: 361 PNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLN 420
PNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLN
Sbjct: 361 PNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLN 420
Query: 421 NPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGL 480
NPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGL
Sbjct: 421 NPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGL 480
Query: 481 IPGFTPGLGALGSTGGSSGTNGSNATPSENTSPTAGTTEPGHQQFIQQMLQALAGVNPQL 540
IPGFTPGLGALGSTGGSSGTNGSNATPSENTSPTAGTTEPGHQQFIQQMLQALAGVNPQL
Sbjct: 481 IPGFTPGLGALGSTGGSSGTNGSNATPSENTSPTAGTTEPGHQQFIQQMLQALAGVNPQL 540
Query: 541 QNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQPS 589
QNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQPS
Sbjct: 541 QNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQPS 589
>gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens]
Length = 561
Score = 1081 bits (2796), Expect = 0.0
Identities = 561/589 (95%), Positives = 561/589 (95%), Gaps = 28/589 (4%)
Query: 1 MAESGESGGPPGSQDSAAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQ 60
MAESGESGGPPGSQDSAAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQ
Sbjct: 1 MAESGESGGPPGSQDSAAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQ 60
Query: 61 FKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQT 120
FKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQT
Sbjct: 61 FKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQT 120
Query: 121 NTAGSNVTTSSTPNSNSTSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLL 180
NTAGSNVTTSSTPNSNSTSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLL
Sbjct: 121 NTAGSNVTTSSTPNSNSTSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLL 180
Query: 181 SNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLE 240
SNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLE
Sbjct: 181 SNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLE 240
Query: 241 LARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLV 300
LARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLV
Sbjct: 241 LARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLV 300
Query: 301 SNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTA 360
SNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTA
Sbjct: 301 SNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTA 360
Query: 361 PNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLN 420
PNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAA
Sbjct: 361 PNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAA----- 415
Query: 421 NPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGL 480
QMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGL
Sbjct: 416 -----------------------QMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGL 452
Query: 481 IPGFTPGLGALGSTGGSSGTNGSNATPSENTSPTAGTTEPGHQQFIQQMLQALAGVNPQL 540
IPGFTPGLGALGSTGGSSGTNGSNATPSENTSPTAGTTEPGHQQFIQQMLQALAGVNPQL
Sbjct: 453 IPGFTPGLGALGSTGGSSGTNGSNATPSENTSPTAGTTEPGHQQFIQQMLQALAGVNPQL 512
Query: 541 QNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQPS 589
QNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQPS
Sbjct: 513 QNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQPS 561
>gi|16753207 ubiquilin 2 [Homo sapiens]
Length = 624
Score = 888 bits (2294), Expect = 0.0
Identities = 475/635 (74%), Positives = 523/635 (82%), Gaps = 57/635 (8%)
Query: 1 MAESGESGGPPGSQDSAAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQ 60
MAE+GES GPP A A+G+ AAA AEPKI+KVTVKTPKEKEEFAVPENSSVQQ
Sbjct: 1 MAENGESSGPPRPSRGPAAAQGS----AAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQ 56
Query: 61 FKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQT 120
FKE ISKRFKS TDQLVLIFAGKILKDQDTL QHGIHDGLTVHLVIK+QNRPQ S Q +
Sbjct: 57 FKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQSTQPS 116
Query: 121 NTAGSNVTTSSTPNSNSTSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLL 180
N AG+N T++STP SNST S SNPFGLG LGGLAGLSSLGL++TNFSELQSQMQ+QL+
Sbjct: 117 NAAGTNTTSASTPRSNSTPISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQSQMQQQLM 176
Query: 181 SNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLE 240
++PEMM+QIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISH+LNNPDIMRQTLE
Sbjct: 177 ASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLE 236
Query: 241 LARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLV 300
+ARNPAMMQEMMRNQD ALSNLESIPGGYNALRRMYTDIQEPML+AAQEQFGGNPFAS+
Sbjct: 237 IARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASVG 296
Query: 301 SNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTA 360
S++SSGEG+QPSRTENRDPLPNPWAP + SSA++ T ++ G +G+++S +G + A
Sbjct: 297 SSSSSGEGTQPSRTENRDPLPNPWAPPPATQSSATTSTTTSTGSGSGNSSSNATGNTVAA 356
Query: 361 PNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLN 420
N V AS+F+TPGMQSLLQQITENPQL+QNMLSAPYMRSMMQSLSQNPDLAAQMMLN
Sbjct: 357 ANYV----ASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQNPDLAAQMMLN 412
Query: 421 NPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGL 480
+PLF NPQLQEQMR QLP FLQQMQNPDTLSAMSNPRAMQAL+QIQQGLQTLATEAPGL
Sbjct: 413 SPLFTANPQLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGLQTLATEAPGL 472
Query: 481 IPGFTPG---------------------------------LGALGSTG-----GSSGTNG 502
IP FTPG +G +G TG GS+G+ G
Sbjct: 473 IPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGG 532
Query: 503 ------SNATPSENTSPTAGTTEPG-HQQFIQQMLQALAGVN-PQLQNPEVRFQQQLEQL 554
S+A PSE TSP T+E G +QQFIQQM+QALAG N PQL NPEVRFQQQLEQL
Sbjct: 533 PTGPTVSSAAPSETTSP---TSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQL 589
Query: 555 SAMGFLNREANLQALIATGGDINAAIERLLGSQPS 589
+AMGFLNREANLQALIATGGDINAAIERLLGSQPS
Sbjct: 590 NAMGFLNREANLQALIATGGDINAAIERLLGSQPS 624
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 688 bits (1775), Expect = 0.0
Identities = 384/612 (62%), Positives = 449/612 (73%), Gaps = 62/612 (10%)
Query: 26 PAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKIL 85
P+ A + P ++VTVKTPK+KEE + + +SV++FKEEIS+RFK+ DQLVLIFAGKIL
Sbjct: 4 PSGAETRPP--IRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKIL 61
Query: 86 KDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNT------AGSNVTTSS---TPNSN 136
KD DTL+QHGI DGLTVHLVIKT + QD +A ++ A + TT + TP
Sbjct: 62 KDGDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQP 121
Query: 137 STSGSATSNPFG-------------------------LGGLGGLAGLSSLGLNTTNFSEL 171
STSGSA+S+ L G GG+ GL SLGL + NF EL
Sbjct: 122 STSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMEL 181
Query: 172 QSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNN 231
Q QMQRQL+SNPEM+ QIMENP VQ M+SNPDLMR +IMANPQMQQL++RNPEISHMLNN
Sbjct: 182 QQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNN 241
Query: 232 PDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQF 291
P++MRQT+ELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPM SAA+EQF
Sbjct: 242 PELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQF 301
Query: 292 GGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTAS 351
G NPF+SL N+ S SQP RTENR+PLPNPW+P S + SG T G S
Sbjct: 302 GNNPFSSLAGNSDS-SSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGG-------S 353
Query: 352 GTSGQSTTAPN----LVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSL 407
GTS T N +G+ MFN+P MQ+LLQQI+ENPQLMQN++SAPYMRSMMQ+L
Sbjct: 354 GTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTL 413
Query: 408 SQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQ 467
+QNPD AAQMM+N PLFAGNPQLQEQ+R QLP FLQQMQNP++LS ++NPRAMQALLQIQ
Sbjct: 414 AQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQ 473
Query: 468 QGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNA--TPSENTS--PTAGTTEP--- 520
QGLQTL TEAPGL+ P LG+ G + + + GSNA TP TS T T+ P
Sbjct: 474 QGLQTLQTEAPGLV----PSLGSFGISRTPAPSAGSNAGSTPEAPTSSPATPATSSPTGA 529
Query: 521 --GHQQFIQQMLQALAGV-NPQLQNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDIN 577
QQ +QQM+Q LAG N Q+Q PEVRFQQQLEQL++MGF+NREANLQALIATGGDIN
Sbjct: 530 SSAQQQLMQQMIQLLAGSGNSQVQTPEVRFQQQLEQLNSMGFINREANLQALIATGGDIN 589
Query: 578 AAIERLLGSQPS 589
AAIERLLGSQ S
Sbjct: 590 AAIERLLGSQLS 601
>gi|8567418 ubiquilin 3 [Homo sapiens]
Length = 655
Score = 339 bits (869), Expect = 5e-93
Identities = 189/396 (47%), Positives = 247/396 (62%), Gaps = 25/396 (6%)
Query: 17 AAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQL 76
A G E + A +P ++KVTVKTPK+KE+F+V + ++QQ KEEIS+RFK+H DQL
Sbjct: 2 AKGGEALPQGSPAPVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQL 61
Query: 77 VLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNTAGSNVTTSSTPNSN 136
VLIFAGKILKD D+L+Q G+ DGLTVHLVIK Q+R + + + S P +
Sbjct: 62 VLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMGNECPAASVPTQGPSPGSLPQPS 121
Query: 137 STSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQ 196
S + F LG L GLS LGL F + S + RQ +S PE + Q++++PF+
Sbjct: 122 SIYPADGPPAFSLGLL---TGLSRLGLAYRGFPDQPSSLMRQHVSVPEFVTQLIDDPFIP 178
Query: 197 SMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQD 256
+LSN L+RQL++ NP MQQLIQ NPEI H+LNNP+IMRQTLE RNPAMMQEM+R+QD
Sbjct: 179 GLLSNTGLVRQLVLDNPHMQQLIQHNPEIGHILNNPEIMRQTLEFLRNPAMMQEMIRSQD 238
Query: 257 RALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLVSNTSSGEGSQPSRTEN 316
R LSNLESIPGGYN L MYTDI +PML+A QEQFGGNPFA+ ++ ++ SQPSR EN
Sbjct: 239 RVLSNLESIPGGYNVLCTMYTDIMDPMLNAVQEQFGGNPFATATTDNATTTTSQPSRMEN 298
Query: 317 RDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPG 376
DPLPNPW ST GG+ + G AP+ + +
Sbjct: 299 CDPLPNPW--------------TSTHGGS--GSRQGRQDGDQDAPD-IRNRFPNFLGIIR 341
Query: 377 MQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPD 412
+ LQQ+ ENPQ + Y++ +LSQ+ +
Sbjct: 342 LYDYLQQLHENPQSL-----GTYLQGTASALSQSQE 372
>gi|145580580 ubiquilin-like [Homo sapiens]
Length = 475
Score = 223 bits (567), Expect = 5e-58
Identities = 165/458 (36%), Positives = 236/458 (51%), Gaps = 56/458 (12%)
Query: 38 KVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIH 97
+V VKT +++F V ++ SV+QFKE + F+ DQLVL+F G +LKD DTLSQ GI
Sbjct: 32 RVIVKTAGNQKDFMVADDISVRQFKEMLLAHFQCQMDQLVLVFMGCLLKDHDTLSQRGIM 91
Query: 98 DGLTVHLVIKTQ--NRPQDHSAQQTNTAGSNVTTSSTPNSNSTSGSATSNPFGLGGLGGL 155
DG T++LVIK++ +R HS + T +T ++S T L
Sbjct: 92 DGHTIYLVIKSKQGSRSLAHSFRDLPTNDPCHRDRNTKGNSSRVHQPTGMNQAPVELAHF 151
Query: 156 AGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQM 215
G + ++T N +S+PE Q++ENP +Q +LSN + M Q I +
Sbjct: 152 VGSDAPKVHTQNLE----------VSHPECKAQMLENPSIQRLLSNMEFMWQFISEHLDT 201
Query: 216 QQLIQRNPEISH-MLNNPDIMRQTLELARNPAMMQEMMRNQDRALS-----------NLE 263
QQL+Q+NPE+S +L+N +I+ QTLELARN AM+QE+M+ Q + + LE
Sbjct: 202 QQLMQQNPEVSRLLLDNSEILLQTLELARNLAMIQEIMQIQQPSQNLEYPLNPQPYLGLE 261
Query: 264 SIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLVS-----NTSSGEGSQPSRTENRD 318
++PGG NAL + Y DI + ML++ Q+ FGGNPF +L++ S P E +D
Sbjct: 262 TMPGGNNALGQNYADINDQMLNSMQDPFGGNPFTALLAGQVLEQVQSSPPPPPPSQEQQD 321
Query: 319 PLPNPWAPQTSQSSS-------ASSGTASTVGGTTGSTAS--GTSGQS----TTAPNLVP 365
L A + +SS +++ T + V T+ + + T GQS T P +P
Sbjct: 322 QLTQHPATRVIYNSSGGFSSNTSANDTLNKVNHTSKANTAMISTKGQSHICATRQPAWIP 381
Query: 366 GVGASMFN----------TPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAA 415
+ + T + S Q + + QL S+ MMQ L NP LAA
Sbjct: 382 ALPSIELTQQLQEEYKDATVSLSSSRQTLKGDLQLSDEQSSSQITGGMMQLLMNNPYLAA 441
Query: 416 QMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSA 453
Q+M LF PQL EQ RQQLPTFLQQ Q D LSA
Sbjct: 442 QIM----LFTSMPQLSEQWRQQLPTFLQQTQISDLLSA 475
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 52.8 bits (125), Expect = 9e-07
Identities = 124/572 (21%), Positives = 202/572 (35%), Gaps = 84/572 (14%)
Query: 9 GPPGSQDSAAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKR 68
GP + A G + G ++ + +++ + P+ + P +V Q ++
Sbjct: 3760 GPGVQTNQALGPKPQGLMPPSSHQGLLVQQLSPQPPQGPQGMLGPAQVAVLQ-QQHPGAL 3818
Query: 69 FKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNTAGSNVT 128
+ VL+ ++L L+Q G GL H ++ Q + Q QQ +
Sbjct: 3819 GPQGPHRQVLMTQSRVLSSPQ-LAQQG--QGLMGHRLVTAQQQQQQQQHQQQGSMAGLSH 3875
Query: 129 TSSTPNSNSTSGSATSNPFG----LGGLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPE 184
+ S+S ++ P G L L L + Q Q+Q+Q L +
Sbjct: 3876 LQQSLMSHSGQPKLSAQPMGSLQQLQQQQQLQQQQQLQQQQQQQLQQQQQLQQQQLQQQQ 3935
Query: 185 MMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNP----EISHMLNNPDIMRQTLE 240
Q+ + Q L +Q Q QQ Q+ S L +P +Q +
Sbjct: 3936 QQQQLQQQQQQQLQQQQQQLQQQQQQQQQQFQQQQQQQQMGLLNQSRTLLSPQ-QQQQQQ 3994
Query: 241 LARNPAMMQEMMRNQDRALSNLESIPGGYNA---LRRMYTDIQEPMLSAAQEQ----FGG 293
+A P M + +++ S PG L + +P +S+ + G
Sbjct: 3995 VALGPGMPAKPLQHF--------SSPGALGPTLLLTGKEQNTVDPAVSSEATEGPSTHQG 4046
Query: 294 NPFA------------SLVSNTSSGEGS----------QPSRTENRDPLPNPWAPQTSQS 331
P A V + SG+ QPS + + PL P Q S
Sbjct: 4047 GPLAIGTTPESMATEPGEVKPSLSGDSQLLLVQPQPQPQPSSLQLQPPLRLPGQQQQQVS 4106
Query: 332 SSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPG--MQSLL---QQITE 386
++G GG+ G SG+S ++++ P+L+ S+ + PG Q+LL Q + E
Sbjct: 4107 LLHTAG-----GGSHGQLGSGSSSEASSVPHLLAQPSVSLGDQPGSMTQNLLGPQQPMLE 4161
Query: 387 NPQLMQNMLSAPYMRSMMQSLSQNP---------DLAAQMMLNNPLFAGNPQLQE---QM 434
P P ++QS P L AQ+ + A NPQL+ Q
Sbjct: 4162 RPMQNNTGPQPPKPGPVLQSGQGLPGVGIMPTVGQLRAQL---QGVLAKNPQLRHLSPQQ 4218
Query: 435 RQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQ--QGLQTLATEAPGLIPGFTPGLGALG 492
+QQL L Q Q + + P + Q QGL + G PG P G L
Sbjct: 4219 QQQLQALLMQRQLQQSQAVRQTPPYQEPGTQTSPLQGLLGCQPQLGG-FPG--PQTGPLQ 4275
Query: 493 STGGSSGTNGSNATPSE----NTSPTAGTTEP 520
G G P+ +T P G P
Sbjct: 4276 ELGAGPRPQGPPRLPAPPGALSTGPVLGPVHP 4307
Score = 34.7 bits (78), Expect = 0.25
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 311 PSRTENRDPL------PNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQ------ST 358
PSR ++RDP P P P+ + + + + T+ GG + +G +G+ S
Sbjct: 2454 PSRPQSRDPFAPLHKPPRPQPPEVAFKAGSLAHTSLGAGGFPAALPAGPAGELHAKVPSG 2513
Query: 359 TAPNLV--PGVGASMFNTPGMQSLLQQITENPQL 390
PN V PG GA + M+ Q P L
Sbjct: 2514 QPPNFVRSPGTGAFVGTPSPMRFTFPQAVGEPSL 2547
Score = 30.8 bits (68), Expect = 3.6
Identities = 47/214 (21%), Positives = 73/214 (34%), Gaps = 37/214 (17%)
Query: 376 GMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMR 435
G ++ QQ + P + N P + +M P + Q +L L PQ + M
Sbjct: 3749 GQVAIQQQQQQGPGVQTNQALGPKPQGLM------PPSSHQGLLVQQLSPQPPQGPQGML 3802
Query: 436 QQLPTFLQQMQNPDTLS--------------AMSNPRAMQA--------LLQIQQGLQTL 473
+ Q Q+P L +S+P+ Q L+ QQ Q
Sbjct: 3803 GPAQVAVLQQQHPGALGPQGPHRQVLMTQSRVLSSPQLAQQGQGLMGHRLVTAQQQQQQQ 3862
Query: 474 ATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPSENTSPTAGTTEPGHQQFIQQMLQAL 533
+ G + G + +L S G P + P + QQ +QQ Q
Sbjct: 3863 QHQQQGSMAGLSHLQQSLMSHSGQ---------PKLSAQPMGSLQQLQQQQQLQQQQQLQ 3913
Query: 534 AGVNPQLQNPEVRFQQQLEQLSAMGFLNREANLQ 567
QLQ + QQQL+Q L ++ Q
Sbjct: 3914 QQQQQQLQQQQQLQQQQLQQQQQQQQLQQQQQQQ 3947
>gi|41152107 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 50.1 bits (118), Expect = 6e-06
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 490 ALGSTGGSS------GTNGSNATPSENTSPTAGTTEPGHQQFIQQMLQAL-AGVNPQLQN 542
AL ST SS GT G ++ S +S T + F Q + AL A P LQ+
Sbjct: 277 ALASTPESSSHTPTPGTQGHSSGTSPMSSGVQSGTPITNDLFSQALQHALQASGQPSLQS 336
Query: 543 PEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIE 581
++Q QL+QL MG + E +L+AL ATGGDI AA+E
Sbjct: 337 ---QWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALE 372
Score = 36.2 bits (82), Expect = 0.087
Identities = 58/289 (20%), Positives = 115/289 (39%), Gaps = 47/289 (16%)
Query: 78 LIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNTAGSNVTTSSTPNSNS 137
LI+ G+ LKD TL +GI G TVH++ K+ P D + + + +
Sbjct: 63 LIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWPEP-DQKPEPVDKVAAMREFRVLHTALH 121
Query: 138 TSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQS 197
+S S F + L L + + T LS+ + + ++++ + S
Sbjct: 122 SSSSYREAVFKM--LSNKESLDQIIVATPG------------LSSDPIALGVLQDKDLFS 167
Query: 198 MLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDR 257
+ ++P+++ L+ A+P + I + H +A + M ++
Sbjct: 168 VFADPNMLDTLVPAHPALVNAIVL---VLH------------SVAGSAPMPGTDSSSRSM 212
Query: 258 ALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLVSNTSSG-------EGSQ 310
S+ +PGG+ ++ LS ++ F N ++ S+T S G+
Sbjct: 213 PSSSYRDMPGGF-----LFEG-----LSDDEDDFHPNTRSTPSSSTPSSRPASLGYSGAA 262
Query: 311 PSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTT 359
R + L A ++ SS+ + T T G ++G++ + QS T
Sbjct: 263 GPRPITQSELATALALASTPESSSHTPTPGTQGHSSGTSPMSSGVQSGT 311
>gi|14249682 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 50.1 bits (118), Expect = 6e-06
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 490 ALGSTGGSS------GTNGSNATPSENTSPTAGTTEPGHQQFIQQMLQAL-AGVNPQLQN 542
AL ST SS GT G ++ S +S T + F Q + AL A P LQ+
Sbjct: 277 ALASTPESSSHTPTPGTQGHSSGTSPMSSGVQSGTPITNDLFSQALQHALQASGQPSLQS 336
Query: 543 PEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIE 581
++Q QL+QL MG + E +L+AL ATGGDI AA+E
Sbjct: 337 ---QWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALE 372
Score = 36.2 bits (82), Expect = 0.087
Identities = 58/289 (20%), Positives = 115/289 (39%), Gaps = 47/289 (16%)
Query: 78 LIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNTAGSNVTTSSTPNSNS 137
LI+ G+ LKD TL +GI G TVH++ K+ P D + + + +
Sbjct: 63 LIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWPEP-DQKPEPVDKVAAMREFRVLHTALH 121
Query: 138 TSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQS 197
+S S F + L L + + T LS+ + + ++++ + S
Sbjct: 122 SSSSYREAVFKM--LSNKESLDQIIVATPG------------LSSDPIALGVLQDKDLFS 167
Query: 198 MLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDR 257
+ ++P+++ L+ A+P + I + H +A + M ++
Sbjct: 168 VFADPNMLDTLVPAHPALVNAIVL---VLH------------SVAGSAPMPGTDSSSRSM 212
Query: 258 ALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLVSNTSSG-------EGSQ 310
S+ +PGG+ ++ LS ++ F N ++ S+T S G+
Sbjct: 213 PSSSYRDMPGGF-----LFEG-----LSDDEDDFHPNTRSTPSSSTPSSRPASLGYSGAA 262
Query: 311 PSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTT 359
R + L A ++ SS+ + T T G ++G++ + QS T
Sbjct: 263 GPRPITQSELATALALASTPESSSHTPTPGTQGHSSGTSPMSSGVQSGT 311
>gi|67010025 Sp4 transcription factor [Homo sapiens]
Length = 784
Score = 47.8 bits (112), Expect = 3e-05
Identities = 84/410 (20%), Positives = 145/410 (35%), Gaps = 58/410 (14%)
Query: 105 VIKTQNRPQDHSAQQTNTAG------------------SNVTTSSTPNSNSTSGSATSNP 146
+++ QN+PQ T AG S +SS+ +S+S +GSA+
Sbjct: 80 LVQLQNQPQQLELVTTQLAGNAWQLVASTPPASKENNVSQPASSSSSSSSSNNGSASPTK 139
Query: 147 FGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMR 206
G + + + S +Q Q+ QL + +QI NP S L +
Sbjct: 140 TKSGNSSTPGQFQVIQVQNPSGS-VQYQVIPQLQTVEGQQIQI--NPTSSSSLQDLQGQI 196
Query: 207 QLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAM-----MQEMMRNQDRALSN 261
QLI A L N S + ++ QT+ + P + +Q + Q + ++
Sbjct: 197 QLISAGNNQAILTAANRTASGNILAQNLANQTVPVQIRPGVSIPLQLQTLPGTQAQVVTT 256
Query: 262 LESIPGGYNALRRMYTDIQ---------EPMLSAAQEQFGGNPFASLVSNTSSGEGSQPS 312
L GG + ++ +P +A GN S +NT++ + P
Sbjct: 257 LPINIGGVTLALPVINNVAAGGGTGQVGQPAATADSGTSNGNQLVSTPTNTTTSASTMPE 316
Query: 313 RTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMF 372
+P +S + + ++ T+ T T S+A ST+A + + S
Sbjct: 317 ------------SPSSSTTCTTTASTSLTSSDTLVSSADTGQYASTSASSSERTIEESQT 364
Query: 373 NTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQE 432
P MQN +Q + Q + Q+ + P Q+
Sbjct: 365 PAATESEAQSSSQLQPNGMQNAQDQSNSLQQVQIVGQ--PILQQIQIQQP--------QQ 414
Query: 433 QMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIP 482
Q+ Q +P Q+Q+ T+ + LQ Q L AP L P
Sbjct: 415 QIIQAIPPQSFQLQSGQTIQTIQQQPLQNVQLQAVNPTQVL-IRAPTLTP 463
Score = 38.1 bits (87), Expect = 0.023
Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 21/246 (8%)
Query: 280 QEPMLSAAQEQFGGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTA 339
Q L Q GN + LV++T P+ EN P A +S SSS+++G+A
Sbjct: 86 QPQQLELVTTQLAGNAW-QLVASTP------PASKENNVSQP---ASSSSSSSSSNNGSA 135
Query: 340 STVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLL-QQITENPQLMQNMLSAP 398
S +G+ S T GQ P P +Q++ QQI NP ++
Sbjct: 136 SPTKTKSGN--SSTPGQFQVIQVQNPSGSVQYQVIPQLQTVEGQQIQINPTSSSSLQD-- 191
Query: 399 YMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQ-MQNPDTLSAMSNP 457
++ +Q +S + A + N +GN Q Q +P ++ + P L +
Sbjct: 192 -LQGQIQLISAGNNQAI-LTAANRTASGNILAQNLANQTVPVQIRPGVSIPLQLQTLPGT 249
Query: 458 RA-MQALLQIQQGLQTLATEAPGLIP--GFTPGLGALGSTGGSSGTNGSNATPSENTSPT 514
+A + L I G TLA + G T +G +T S +NG+ + + T
Sbjct: 250 QAQVVTTLPINIGGVTLALPVINNVAAGGGTGQVGQPAATADSGTSNGNQLVSTPTNTTT 309
Query: 515 AGTTEP 520
+ +T P
Sbjct: 310 SASTMP 315
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 46.6 bits (109), Expect = 6e-05
Identities = 51/166 (30%), Positives = 66/166 (39%), Gaps = 13/166 (7%)
Query: 409 QNPDLAAQMMLNNPLFAG---NPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQ 465
Q PDL + ++P + QLQ +++QQ F Q NP L P +ALLQ
Sbjct: 1629 QTPDLISAQPAHHPPQSPAQIQMQLQHELQQQAAFFQPQFLNPAFLPHF--PMTPEALLQ 1686
Query: 466 IQQGLQTLATEAPGLIPGFTPGLGALGS-TGGSSGTNGSNATPSENTSPTAGTTEPGHQ- 523
QQ PG P LG GS T G G G + E+ T Q
Sbjct: 1687 FQQPQFLFPFYIPGTEFSLGPDLGLPGSATFGMPGMTGMAGSLLEDLKQQIQTQHHVGQT 1746
Query: 524 --QFIQQMLQALAGVNPQLQNPEVRFQ----QQLEQLSAMGFLNRE 563
Q +QQ Q PQLQ + + Q QQ +Q A L +E
Sbjct: 1747 QLQILQQQAQQYQATQPQLQPQKQQQQPPPPQQQQQQQASKLLKQE 1792
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 45.8 bits (107), Expect = 1e-04
Identities = 53/237 (22%), Positives = 99/237 (41%), Gaps = 14/237 (5%)
Query: 28 AAASAEPKIMKVTVKT-PKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK 86
+ A EP ++V VKT + F V +V++FKE I+ +++ LI+ G++L+
Sbjct: 8 STAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ 67
Query: 87 DQDTLSQHGIHDGLTVHLVIKTQNRPQDH----SAQQTNTAGSNVTTSSTPNSNSTSGSA 142
D L ++ + G +HLV + PQ H ++ T +A + S P + S
Sbjct: 68 DDKKLQEYNV-GGKVIHLVERAP--PQTHLPSGASSGTGSASATHGGGSPPGTRGPGASV 124
Query: 143 TSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPF--VQSMLS 200
+ G L S G ++ Q + S P + + + ++ +Q++LS
Sbjct: 125 HDRNANSYVMVGTFNLPSDGSAVDVHINME---QAPIQSEPRVRLVMAQHMIRDIQTLLS 181
Query: 201 NPDLMRQLIMANPQMQQLIQRNPEISHMLNNP-DIMRQTLELARNPAMMQEMMRNQD 256
+ + L Q Q P+ + P + QT E + A +E M ++
Sbjct: 182 RMETLPYLQCRGGPQPQHSQPPPQPPAVTPEPVALSSQTSEPVESEAPPREPMEAEE 238
Score = 34.7 bits (78), Expect = 0.25
Identities = 46/193 (23%), Positives = 68/193 (35%), Gaps = 16/193 (8%)
Query: 326 PQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTA--PNLVPGVGASMFNTPGMQSL--- 380
PQT S ASSGT S G + GT G + N V FN P S
Sbjct: 90 PQTHLPSGASSGTGSASATHGGGSPPGTRGPGASVHDRNANSYVMVGTFNLPSDGSAVDV 149
Query: 381 ---LQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQ 437
++Q + ++ A +M +Q+L + + G PQ Q
Sbjct: 150 HINMEQAPIQSEPRVRLVMAQHMIRDIQTLLSRMETLPYLQCR-----GGPQPQHSQPPP 204
Query: 438 LPTFLQQMQNPDTLSAM-SNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLGALGSTGG 496
P + P LS+ S P +A + + + AP P TPG G T
Sbjct: 205 QPPAV--TPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPAPAGPTPA 262
Query: 497 SSGTNGSNATPSE 509
++ +P+E
Sbjct: 263 PETNAPNHPSPAE 275
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 43.9 bits (102), Expect = 4e-04
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 28 AAASAEPKIMKVTVKT-PKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK 86
+ A EP ++V VKT + F V +V++FKE I+ +++ LI+ G++L+
Sbjct: 8 STAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ 67
Query: 87 DQDTLSQHGIHDGLTVHLVIKTQNRPQDH--SAQQTNTAGSNVT 128
D L ++ + G +HLV + PQ H S + T ++ T
Sbjct: 68 DDKKLQEYNV-GGKVIHLVERAP--PQTHLPSGASSGTGSASAT 108
Score = 37.4 bits (85), Expect = 0.039
Identities = 49/187 (26%), Positives = 69/187 (36%), Gaps = 10/187 (5%)
Query: 326 PQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTA--PNLVPGVGASMFNTPGMQSLLQQ 383
PQT S ASSGT S G + GT G + N V FN P S +
Sbjct: 90 PQTHLPSGASSGTGSASATHGGGSPPGTRGPGASVHDRNANSYVMVGTFNLPSDGSAVDV 149
Query: 384 ITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQ 443
Q + S P +R +M +Q+ Q +L+ G PQ Q P +
Sbjct: 150 HINMEQ--APIQSEPRVRLVM---AQHMIRDIQTLLSRMECRGGPQPQHSQPPPQPPAV- 203
Query: 444 QMQNPDTLSAM-SNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNG 502
P LS+ S P +A + + + AP P TPG G T
Sbjct: 204 -TPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPAPAGPTPAPETNAP 262
Query: 503 SNATPSE 509
++ +P+E
Sbjct: 263 NHPSPAE 269
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 43.9 bits (102), Expect = 4e-04
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 28 AAASAEPKIMKVTVKT-PKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK 86
+ A EP ++V VKT + F V +V++FKE I+ +++ LI+ G++L+
Sbjct: 8 STAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ 67
Query: 87 DQDTLSQHGIHDGLTVHLVIKTQNRPQDH--SAQQTNTAGSNVT 128
D L ++ + G +HLV + PQ H S + T ++ T
Sbjct: 68 DDKKLQEYNV-GGKVIHLVERAP--PQTHLPSGASSGTGSASAT 108
Score = 37.4 bits (85), Expect = 0.039
Identities = 49/187 (26%), Positives = 69/187 (36%), Gaps = 10/187 (5%)
Query: 326 PQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTA--PNLVPGVGASMFNTPGMQSLLQQ 383
PQT S ASSGT S G + GT G + N V FN P S +
Sbjct: 90 PQTHLPSGASSGTGSASATHGGGSPPGTRGPGASVHDRNANSYVMVGTFNLPSDGSAVDV 149
Query: 384 ITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQ 443
Q + S P +R +M +Q+ Q +L+ G PQ Q P +
Sbjct: 150 HINMEQ--APIQSEPRVRLVM---AQHMIRDIQTLLSRMECRGGPQPQHSQPPPQPPAV- 203
Query: 444 QMQNPDTLSAM-SNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNG 502
P LS+ S P +A + + + AP P TPG G T
Sbjct: 204 -TPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPAPAGPTPAPETNAP 262
Query: 503 SNATPSE 509
++ +P+E
Sbjct: 263 NHPSPAE 269
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 43.9 bits (102), Expect = 4e-04
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 28 AAASAEPKIMKVTVKT-PKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK 86
+ A EP ++V VKT + F V +V++FKE I+ +++ LI+ G++L+
Sbjct: 8 STAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ 67
Query: 87 DQDTLSQHGIHDGLTVHLVIKTQNRPQDH--SAQQTNTAGSNVT 128
D L ++ + G +HLV + PQ H S + T ++ T
Sbjct: 68 DDKKLQEYNV-GGKVIHLVERAP--PQTHLPSGASSGTGSASAT 108
Score = 37.4 bits (85), Expect = 0.039
Identities = 49/187 (26%), Positives = 69/187 (36%), Gaps = 10/187 (5%)
Query: 326 PQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTA--PNLVPGVGASMFNTPGMQSLLQQ 383
PQT S ASSGT S G + GT G + N V FN P S +
Sbjct: 90 PQTHLPSGASSGTGSASATHGGGSPPGTRGPGASVHDRNANSYVMVGTFNLPSDGSAVDV 149
Query: 384 ITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQ 443
Q + S P +R +M +Q+ Q +L+ G PQ Q P +
Sbjct: 150 HINMEQ--APIQSEPRVRLVM---AQHMIRDIQTLLSRMECRGGPQPQHSQPPPQPPAV- 203
Query: 444 QMQNPDTLSAM-SNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNG 502
P LS+ S P +A + + + AP P TPG G T
Sbjct: 204 -TPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPAPAGPTPAPETNAP 262
Query: 503 SNATPSE 509
++ +P+E
Sbjct: 263 NHPSPAE 269
>gi|223555919 hepatocellular carcinoma related protein 1 isoform 1
[Homo sapiens]
Length = 397
Score = 43.5 bits (101), Expect = 5e-04
Identities = 84/370 (22%), Positives = 143/370 (38%), Gaps = 75/370 (20%)
Query: 133 PNSNSTSGSATSNPFGLGGLGGLAG--LSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIM 190
P + S S SA +P GL L + SL + ++ +E+Q ++ +L
Sbjct: 6 PLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRL----------- 54
Query: 191 ENPF-VQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQ 249
PF + ++ N +++ L PQ + +I P I H L + + T L N M
Sbjct: 55 --PFTINNLTININIL--LPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPLVNNFTMHS 110
Query: 250 EMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLVSNTSSGEGS 309
++ + L P P+L+ F P+ L SN S G
Sbjct: 111 DLGKIIQSLLDEFWKNP---------------PVLAPTSTAF---PY--LYSNPS---GM 147
Query: 310 QPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGG-----TTGSTASGTSGQSTTAPNLV 364
P ++ LP P+ PQ + S S A TV TT A+ + G + P +
Sbjct: 148 SPYASQGFPFLP-PYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLPI 206
Query: 365 PGVGASM--------FNTPGMQSLLQQITE---------NPQ---LMQNMLSAPYMRSMM 404
P V AS+ + P + +++E N Q L++ L+ P ++ ++
Sbjct: 207 PTVDASIPTSQNGFGYKMPDVPDAFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQII 266
Query: 405 QS----LSQNPDLAAQMMLNNPLFAGNPQL----QEQMRQQLPTFLQQMQNPDTLSAMSN 456
+ +LA + +L P Q E + Q TF ++MQ LS +
Sbjct: 267 TDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCS 326
Query: 457 PRAMQALLQI 466
A+QA L++
Sbjct: 327 ASALQARLKV 336
>gi|189011568 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 43.5 bits (101), Expect = 5e-04
Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 16/223 (7%)
Query: 306 GEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQ------STT 359
G PSR+ +RD P+ A Q S G S G G + Q +T
Sbjct: 2294 GSSKAPSRSGSRDSTPSRPAQQPLSRPIQSPGRNSISPGRNGISPPNKLSQLPRTSSPST 2353
Query: 360 APNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQ--NPDLAAQM 417
A G G + +PG Q Q +T+ L +N S P S + L+Q N + A +
Sbjct: 2354 ASTKSSGSGKMSYTSPGRQMSQQNLTKQTGLSKNASSIPRSESASKGLNQMNNGNGANKK 2413
Query: 418 MLNNPLFAGNPQLQEQMRQQLP------TFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQ 471
+ + + + E R + P TF+++ +P + + ++L +
Sbjct: 2414 VELSRMSSTKSSGSESDRSERPVLVRQSTFIKEAPSPTLRRKLEESASFESLSPSSRPAS 2473
Query: 472 TLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPSENTSPT 514
++A P +P L + + SS G N SPT
Sbjct: 2474 PTRSQAQ--TPVLSPSLPDMSLSTHSSVQAGGWRKLPPNLSPT 2514
>gi|189011566 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 43.5 bits (101), Expect = 5e-04
Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 16/223 (7%)
Query: 306 GEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQ------STT 359
G PSR+ +RD P+ A Q S G S G G + Q +T
Sbjct: 2294 GSSKAPSRSGSRDSTPSRPAQQPLSRPIQSPGRNSISPGRNGISPPNKLSQLPRTSSPST 2353
Query: 360 APNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQ--NPDLAAQM 417
A G G + +PG Q Q +T+ L +N S P S + L+Q N + A +
Sbjct: 2354 ASTKSSGSGKMSYTSPGRQMSQQNLTKQTGLSKNASSIPRSESASKGLNQMNNGNGANKK 2413
Query: 418 MLNNPLFAGNPQLQEQMRQQLP------TFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQ 471
+ + + + E R + P TF+++ +P + + ++L +
Sbjct: 2414 VELSRMSSTKSSGSESDRSERPVLVRQSTFIKEAPSPTLRRKLEESASFESLSPSSRPAS 2473
Query: 472 TLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPSENTSPT 514
++A P +P L + + SS G N SPT
Sbjct: 2474 PTRSQAQ--TPVLSPSLPDMSLSTHSSVQAGGWRKLPPNLSPT 2514
>gi|53759122 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 43.5 bits (101), Expect = 5e-04
Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 16/223 (7%)
Query: 306 GEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQ------STT 359
G PSR+ +RD P+ A Q S G S G G + Q +T
Sbjct: 2294 GSSKAPSRSGSRDSTPSRPAQQPLSRPIQSPGRNSISPGRNGISPPNKLSQLPRTSSPST 2353
Query: 360 APNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQ--NPDLAAQM 417
A G G + +PG Q Q +T+ L +N S P S + L+Q N + A +
Sbjct: 2354 ASTKSSGSGKMSYTSPGRQMSQQNLTKQTGLSKNASSIPRSESASKGLNQMNNGNGANKK 2413
Query: 418 MLNNPLFAGNPQLQEQMRQQLP------TFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQ 471
+ + + + E R + P TF+++ +P + + ++L +
Sbjct: 2414 VELSRMSSTKSSGSESDRSERPVLVRQSTFIKEAPSPTLRRKLEESASFESLSPSSRPAS 2473
Query: 472 TLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPSENTSPT 514
++A P +P L + + SS G N SPT
Sbjct: 2474 PTRSQAQ--TPVLSPSLPDMSLSTHSSVQAGGWRKLPPNLSPT 2514
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 41.6 bits (96), Expect = 0.002
Identities = 78/298 (26%), Positives = 113/298 (37%), Gaps = 37/298 (12%)
Query: 116 SAQQTNTAGSNVTTSSTPNSNSTSGSATSNPFGLGG-LGGLAGLSSLGLNTTNFSELQSQ 174
+AQQ +A + V P N PF + G LGG GL L L T N + +Q
Sbjct: 98 TAQQLASAVAGVMPGGPPALNQP----ILIPFNMAGQLGGQQGLV-LTLPTANLTNIQGL 152
Query: 175 MQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEIS-HMLNNPD 233
+ +M ++N S L++ QL + Q QQ Q P + H P
Sbjct: 153 VAAAAAGG--IMTLPLQNLQATSSLNSQLQQLQLQLQQQQQQQQQQPPPSTNQHPQPAPQ 210
Query: 234 IMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGG 293
Q+ + P Q+ + P + L++ Q S +Q Q
Sbjct: 211 APSQSQQQPLQPTPPQQPPPASQQP-------PAPTSQLQQAPQPQQHQPHSHSQNQNQP 263
Query: 294 NPFASLVS-----NTSSGEGSQPSRTENRDPLP---NPWAPQTSQSSSASSGTAST---- 341
+P S + S G G PS +PL NP A Q + +++A S AS+
Sbjct: 264 SPTQQSSSPPQKPSQSPGHGL-PSPLTPPNPLQLVNNPLASQAAAAAAAMSSIASSQAFG 322
Query: 342 -----VGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSL-LQQITENPQLMQN 393
+ G TG + GQ L+P G S G Q L +Q IT PQL+ N
Sbjct: 323 NALSSLQGVTGQLVTNAQGQIIGTIPLMPNPGPSSQAASGTQGLQVQPIT--PQLLTN 378
Score = 37.0 bits (84), Expect = 0.051
Identities = 56/204 (27%), Positives = 79/204 (38%), Gaps = 39/204 (19%)
Query: 377 MQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAA--QMMLNNPLFAGNPQLQEQM 434
M +LLQ Q+ + +LS +RS M + + D AA LN PL A ++
Sbjct: 1 MSALLQDPMIAGQVSKPLLS---VRSEMNAELRGEDKAATSDSELNEPLLA---PVESND 54
Query: 435 RQQLPTFLQQMQNPDTLSAMSNPRAMQA-------------LLQIQQGLQTLATEAPGLI 481
+ P+ L + LS P QA LL QQ LA+ G++
Sbjct: 55 SEDTPSKLFGARGNPALSDPGTPDQHQASQTHPPFPVGPQPLLTAQQ----LASAVAGVM 110
Query: 482 PGFTPGLGA--------LGSTGGSSGTNGSNATPSENTSPTAGTTEP----GHQQFIQQM 529
PG P L G GG G P+ N + G G Q
Sbjct: 111 PGGPPALNQPILIPFNMAGQLGGQQGL--VLTLPTANLTNIQGLVAAAAAGGIMTLPLQN 168
Query: 530 LQALAGVNPQLQNPEVRFQQQLEQ 553
LQA + +N QLQ +++ QQQ +Q
Sbjct: 169 LQATSSLNSQLQQLQLQLQQQQQQ 192
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 41.2 bits (95), Expect = 0.003
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 285 SAAQEQFGGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGG 344
+AA GG P A+ S +G Q + T R P P P AP +S SS +S G
Sbjct: 10 TAAGGATGGGPQAA---RRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSS--------G 58
Query: 345 TTGSTASGTSGQSTTAPNLVPGVGA 369
++G SG++GQ T L G A
Sbjct: 59 SSGGGGSGSAGQPTLGSMLAVGSAA 83
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 41.2 bits (95), Expect = 0.003
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + DQ LIFAGK L+D TLS +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 96 IHDGLTVHLVIKTQNRPQDHSAQQTNTAGSN 126
I T+HLV++ + + + T N
Sbjct: 61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKN 91
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 41.2 bits (95), Expect = 0.003
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + DQ LIFAGK L+D TLS +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 96 IHDGLTVHLVIKTQNRPQDHSAQQTNTAGSN 126
I T+HLV++ + + + T N
Sbjct: 61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKN 91
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 41.2 bits (95), Expect = 0.003
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + +DQ LIFAGK L+D TLS +
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYN 212
Query: 96 IHDGLTVHLVIKTQNRPQ 113
I T+HLV++ + Q
Sbjct: 213 IQKESTLHLVLRLRGGMQ 230
Score = 40.4 bits (93), Expect = 0.005
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + DQ LIFAGK L+D TLS +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 96 IHDGLTVHLVIKTQNRPQ 113
I T+HLV++ + Q
Sbjct: 61 IQKESTLHLVLRLRGGMQ 78
Score = 40.4 bits (93), Expect = 0.005
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + DQ LIFAGK L+D TLS +
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 96 IHDGLTVHLVIKTQNRPQ 113
I T+HLV++ + Q
Sbjct: 137 IQKESTLHLVLRLRGGMQ 154
Score = 40.4 bits (93), Expect = 0.005
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + DQ LIFAGK L+D TLS +
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 96 IHDGLTVHLVIKTQNRPQ 113
I T+HLV++ + Q
Sbjct: 289 IQKESTLHLVLRLRGGMQ 306
Score = 40.4 bits (93), Expect = 0.005
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + DQ LIFAGK L+D TLS +
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 96 IHDGLTVHLVIKTQNRPQ 113
I T+HLV++ + Q
Sbjct: 365 IQKESTLHLVLRLRGGMQ 382
Score = 40.4 bits (93), Expect = 0.005
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + DQ LIFAGK L+D TLS +
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 96 IHDGLTVHLVIKTQNRPQ 113
I T+HLV++ + Q
Sbjct: 441 IQKESTLHLVLRLRGGMQ 458
Score = 40.4 bits (93), Expect = 0.005
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + DQ LIFAGK L+D TLS +
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 96 IHDGLTVHLVIKTQNRPQ 113
I T+HLV++ + Q
Sbjct: 517 IQKESTLHLVLRLRGGMQ 534
Score = 40.4 bits (93), Expect = 0.005
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + DQ LIFAGK L+D TLS +
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 96 IHDGLTVHLVIKTQNRPQ 113
I T+HLV++ + Q
Sbjct: 593 IQKESTLHLVLRLRGGMQ 610
Score = 40.0 bits (92), Expect = 0.006
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + DQ LIFAGK L+D TLS +
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 96 IHDGLTVHLVIK 107
I T+HLV++
Sbjct: 669 IQKESTLHLVLR 680
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 40.8 bits (94), Expect = 0.004
Identities = 55/230 (23%), Positives = 80/230 (34%), Gaps = 37/230 (16%)
Query: 323 PWAPQTSQSSSASSG-----------TASTVGGTTGSTASGTSGQSTTAPNLVPGVGASM 371
P P TS ++ SS T +T +TGSTA+ +S T P P V S
Sbjct: 4702 PSTPATSSTAMPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTAPP---PKVLTSP 4758
Query: 372 FNTPGMQSLLQQITENPQLMQNM--LSAPYMRSMMQSLSQNPDLA--------------- 414
TP S + +P+ + L++ +S S++ P
Sbjct: 4759 ATTPTATSSKATSSSSPRTATTLPVLTSTATKSTATSVTPIPSSTLGTTGTLPEQTTTPV 4818
Query: 415 AQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLA 474
A M +P + P+ T + S P L ++ T A
Sbjct: 4819 ATMSTIHP--SSTPETTHTSTVLTTKATTTRATSSTSTPSSTPGTTWILTELTTAATTTA 4876
Query: 475 TEAPGLIPGFTPG----LGALGSTGGSSGTNGSNATPSENTSPTAGTTEP 520
P P TPG L L +T ++ + GS ATPS T TEP
Sbjct: 4877 ATGPTATPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTTWILTEP 4926
Score = 36.6 bits (83), Expect = 0.066
Identities = 52/215 (24%), Positives = 72/215 (33%), Gaps = 36/215 (16%)
Query: 323 PWAPQTSQSSSASSG-----------TASTVGGTTGSTASGTSGQSTTAPNLVPGVGASM 371
P P TS +++ SS TA+T TTGSTA +S T P P V S
Sbjct: 3555 PSTPATSSTATPSSTPGTTWILTEQTTAATTTATTGSTAIPSSTPGTAPP---PKVLTST 3611
Query: 372 FNTPGMQSLLQQITENPQLMQNM--LSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQ 429
TP S + +P+ + L++ +S S + P
Sbjct: 3612 ATTPTATSSKATSSSSPRTATTLPVLTSTATKSTATSFTPIPSFT---------LGTTGT 3662
Query: 430 LQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPG-- 487
L EQ + T T+ S P + T + P TPG
Sbjct: 3663 LPEQTTTPMATM-------STIHPSSTPETTHTSTVLTTKATTTRATSSMSTPSSTPGTT 3715
Query: 488 --LGALGSTGGSSGTNGSNATPSENTSPTAGTTEP 520
L L + ++ G ATPS T TEP
Sbjct: 3716 WILTELTTAATTTAATGPTATPSSTPGTTWILTEP 3750
Score = 34.7 bits (78), Expect = 0.25
Identities = 44/192 (22%), Positives = 72/192 (37%), Gaps = 25/192 (13%)
Query: 328 TSQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITEN 387
T+ +++AS+G+ +T T G+T T +T + G A+ +T Q T
Sbjct: 4899 TTATTTASTGSTATPSSTPGTTWILTEPSTTATVTVPTGSTATASST--------QATAG 4950
Query: 388 PQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQN 447
+ + P + S + S +P A + P L+ T
Sbjct: 4951 TPHVSTTATTPTVTSSKATPSSSPGTATAL----------PALRSTATTPTATSF----- 4995
Query: 448 PDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATP 507
+ + S L Q T++T P P L +T ++G GS ATP
Sbjct: 4996 -TAIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETVHTSTVLTATATTTGATGSVATP 5054
Query: 508 SENTSPTAGTTE 519
S +T TA TT+
Sbjct: 5055 S-STPGTAHTTK 5065
Score = 32.0 bits (71), Expect = 1.6
Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 27/191 (14%)
Query: 329 SQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITENP 388
S +++S+ T S+ GTT T+ +TTA S T P
Sbjct: 2580 STPATSSTATPSSTPGTTWILTKPTTTATTTASTGSTATPTSTLRT----------APPP 2629
Query: 389 QLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNP 448
+++ + P + S + S +P A + P L+ T +
Sbjct: 2630 KVLTTTATTPTVTSSKATPSSSPGTATAL----------PALRSTATTPTAT------SV 2673
Query: 449 DTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPS 508
+ + S L Q T++T P P L +T ++G GS ATPS
Sbjct: 2674 TPIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETAHTSTVLTATATTTGATGSVATPS 2733
Query: 509 ENTSPTAGTTE 519
+T TA TT+
Sbjct: 2734 -STPGTAHTTK 2743
Score = 31.6 bits (70), Expect = 2.1
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 472 TLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPSENTSPTAGTTEP 520
T +T P PG T L L +T ++ + GS ATPS T TEP
Sbjct: 4205 TSSTATPSSTPGTTWILTKLTTTATTTESTGSTATPSSTPGTTWILTEP 4253
Score = 31.2 bits (69), Expect = 2.8
Identities = 49/210 (23%), Positives = 74/210 (35%), Gaps = 30/210 (14%)
Query: 323 PWAPQTSQSSSASSG-----------TASTVGGTTGSTASGTSGQSTTAPNLVPGVGASM 371
P P TS ++ SS T +T +TGSTA+ +S TT P A++
Sbjct: 3053 PSTPATSSTAMPSSTPGTTWILTELTTTATTTESTGSTATPSSTPGTTWILTEPSTTATV 3112
Query: 372 FNTPGMQSLLQ--QITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQ 429
G + Q T + + P + S + +P A + P
Sbjct: 3113 TVPTGSTATASSTQATAGTPHVSTTATTPTVTSSKATPFSSPGTATAL----------PA 3162
Query: 430 LQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLG 489
L+ T + + S L Q T++T P P
Sbjct: 3163 LRSTATTPTATSF------TAIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETVHTST 3216
Query: 490 ALGSTGGSSGTNGSNATPSENTSPTAGTTE 519
L +T ++G GS ATPS +T TA TT+
Sbjct: 3217 VLTTTATTTGATGSVATPS-STPGTAHTTK 3245
Score = 31.2 bits (69), Expect = 2.8
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 472 TLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPSENTSPTAGTTEP 520
T +T P PG T L L +T ++ + GS ATPS T TEP
Sbjct: 3058 TSSTAMPSSTPGTTWILTELTTTATTTESTGSTATPSSTPGTTWILTEP 3106
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 40.8 bits (94), Expect = 0.004
Identities = 55/230 (23%), Positives = 80/230 (34%), Gaps = 37/230 (16%)
Query: 323 PWAPQTSQSSSASSG-----------TASTVGGTTGSTASGTSGQSTTAPNLVPGVGASM 371
P P TS ++ SS T +T +TGSTA+ +S T P P V S
Sbjct: 4232 PSTPATSSTAMPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTAPP---PKVLTSP 4288
Query: 372 FNTPGMQSLLQQITENPQLMQNM--LSAPYMRSMMQSLSQNPDLA--------------- 414
TP S + +P+ + L++ +S S++ P
Sbjct: 4289 ATTPTATSSKATSSSSPRTATTLPVLTSTATKSTATSVTPIPSSTLGTTGTLPEQTTTPV 4348
Query: 415 AQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLA 474
A M +P + P+ T + S P L ++ T A
Sbjct: 4349 ATMSTIHP--SSTPETTHTSTVLTTKATTTRATSSTSTPSSTPGTTWILTELTTAATTTA 4406
Query: 475 TEAPGLIPGFTPG----LGALGSTGGSSGTNGSNATPSENTSPTAGTTEP 520
P P TPG L L +T ++ + GS ATPS T TEP
Sbjct: 4407 ATGPTATPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTTWILTEP 4456
Score = 36.6 bits (83), Expect = 0.066
Identities = 52/215 (24%), Positives = 72/215 (33%), Gaps = 36/215 (16%)
Query: 323 PWAPQTSQSSSASSG-----------TASTVGGTTGSTASGTSGQSTTAPNLVPGVGASM 371
P P TS +++ SS TA+T TTGSTA +S T P P V S
Sbjct: 2975 PSTPATSSTATPSSTPGTTWILTEQTTAATTTATTGSTAIPSSTPGTAPP---PKVLTST 3031
Query: 372 FNTPGMQSLLQQITENPQLMQNM--LSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQ 429
TP S + +P+ + L++ +S S + P
Sbjct: 3032 ATTPTATSSKATSSSSPRTATTLPVLTSTATKSTATSFTPIPSFT---------LGTTGT 3082
Query: 430 LQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPG-- 487
L EQ + T T+ S P + T + P TPG
Sbjct: 3083 LPEQTTTPMATM-------STIHPSSTPETTHTSTVLTTKATTTRATSSMSTPSSTPGTT 3135
Query: 488 --LGALGSTGGSSGTNGSNATPSENTSPTAGTTEP 520
L L + ++ G ATPS T TEP
Sbjct: 3136 WILTELTTAATTTAATGPTATPSSTPGTTWILTEP 3170
Score = 34.7 bits (78), Expect = 0.25
Identities = 44/192 (22%), Positives = 72/192 (37%), Gaps = 25/192 (13%)
Query: 328 TSQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITEN 387
T+ +++AS+G+ +T T G+T T +T + G A+ +T Q T
Sbjct: 4429 TTATTTASTGSTATPSSTPGTTWILTEPSTTATVTVPTGSTATASST--------QATAG 4480
Query: 388 PQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQN 447
+ + P + S + S +P A + P L+ T
Sbjct: 4481 TPHVSTTATTPTVTSSKATPSSSPGTATAL----------PALRSTATTPTATSF----- 4525
Query: 448 PDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATP 507
+ + S L Q T++T P P L +T ++G GS ATP
Sbjct: 4526 -TAIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETVHTSTVLTATATTTGATGSVATP 4584
Query: 508 SENTSPTAGTTE 519
S +T TA TT+
Sbjct: 4585 S-STPGTAHTTK 4595
Score = 32.0 bits (71), Expect = 1.6
Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 27/191 (14%)
Query: 329 SQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITENP 388
S +++S+ T S+ GTT T+ +TTA S T P
Sbjct: 1890 STPATSSTATPSSTPGTTWILTKPTTTATTTASTGSTATPTSTLRT----------APPP 1939
Query: 389 QLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNP 448
+++ + P + S + S +P A + P L+ T +
Sbjct: 1940 KVLTTTATTPTVTSSKATPSSSPGTATAL----------PALRSTATTPTAT------SV 1983
Query: 449 DTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPS 508
+ + S L Q T++T P P L +T ++G GS ATPS
Sbjct: 1984 TPIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETAHTSTVLTATATTTGATGSVATPS 2043
Query: 509 ENTSPTAGTTE 519
+T TA TT+
Sbjct: 2044 -STPGTAHTTK 2053
Score = 31.6 bits (70), Expect = 2.1
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 472 TLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPSENTSPTAGTTEP 520
T +T P PG T L L +T ++ + GS ATPS T TEP
Sbjct: 3680 TSSTATPSSTPGTTWILTKLTTTATTTESTGSTATPSSTPGTTWILTEP 3728
Score = 31.2 bits (69), Expect = 2.8
Identities = 49/210 (23%), Positives = 74/210 (35%), Gaps = 30/210 (14%)
Query: 323 PWAPQTSQSSSASSG-----------TASTVGGTTGSTASGTSGQSTTAPNLVPGVGASM 371
P P TS ++ SS T +T +TGSTA+ +S TT P A++
Sbjct: 2418 PSTPATSSTAMPSSTPGTTWILTELTTTATTTESTGSTATPSSTPGTTWILTEPSTTATV 2477
Query: 372 FNTPGMQSLLQ--QITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQ 429
G + Q T + + P + S + +P A + P
Sbjct: 2478 TVPTGSTATASSTQATAGTPHVSTTATTPTVTSSKATPFSSPGTATAL----------PA 2527
Query: 430 LQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLG 489
L+ T + + S L Q T++T P P
Sbjct: 2528 LRSTATTPTATSF------TAIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETVHTST 2581
Query: 490 ALGSTGGSSGTNGSNATPSENTSPTAGTTE 519
L +T ++G GS ATPS +T TA TT+
Sbjct: 2582 VLTTTATTTGATGSVATPS-STPGTAHTTK 2610
Score = 31.2 bits (69), Expect = 2.8
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 472 TLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPSENTSPTAGTTEP 520
T +T P PG T L L +T ++ + GS ATPS T TEP
Sbjct: 2423 TSSTAMPSSTPGTTWILTELTTTATTTESTGSTATPSSTPGTTWILTEP 2471
Score = 30.4 bits (67), Expect = 4.8
Identities = 49/205 (23%), Positives = 70/205 (34%), Gaps = 31/205 (15%)
Query: 328 TSQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPG------VGASMFNTPGMQSLL 381
T SS+ +SGT ++ TT +T + T STT P+ PG V S TP S
Sbjct: 4669 TPSSSTQTSGTPPSLT-TTATTITATG--STTNPSSTPGTTPITPVLTSTATTPAATSSK 4725
Query: 382 QQITENPQLMQNM--LSAPYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLP 439
+ +P+ + L++ +S S + P P P
Sbjct: 4726 ATSSSSPRTATTLPVLTSTATKSTATSFTPIPSSTLWTTWTVPAQTTTP----------- 4774
Query: 440 TFLQQMQNPDTLSAMSNPRAMQALLQI----QQGLQTLATEAPGLIPGFTPGLGALGSTG 495
M T+ S P + T +T P G T L L +T
Sbjct: 4775 -----MSTMSTIHTSSTPETTHTSTVLTTTATMTRATNSTATPSSTLGTTRILTELTTTA 4829
Query: 496 GSSGTNGSNATPSENTSPTAGTTEP 520
++ GS AT S T TEP
Sbjct: 4830 TTTAATGSTATLSSTPGTTWILTEP 4854
Score = 30.0 bits (66), Expect = 6.2
Identities = 45/200 (22%), Positives = 68/200 (34%), Gaps = 11/200 (5%)
Query: 326 PQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQIT 385
P+T+ +S+ + TA+T G TGS A+ +S T VP + F S +T
Sbjct: 2017 PETAHTSTVLTATATTT-GATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSSSPGTALT 2075
Query: 386 ENPQLMQNMLSAPYMRSMMQSLSQNP---DLAAQMMLNNPLFA----GNPQLQEQMRQQL 438
P + + + P R + S P A + A P Q
Sbjct: 2076 --PPVWISTTTTPTTRGSTVTPSSIPGTTHTATVLTTTTTTVATGSMATPSSSTQTSGTP 2133
Query: 439 PTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLGALGSTGGSS 498
P+ + +NP + I L T AT TP ALG+T
Sbjct: 2134 PSLTTTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSNTVTPS-SALGTTHTPP 2192
Query: 499 GTNGSNATPSENTSPTAGTT 518
N T + P++ T
Sbjct: 2193 VPNTMATTHGRSLPPSSPHT 2212
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 40.8 bits (94), Expect = 0.004
Identities = 86/433 (19%), Positives = 146/433 (33%), Gaps = 52/433 (12%)
Query: 138 TSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQS 197
TSG A P + + + L L + Q Q Q Q + Q + Q
Sbjct: 133 TSGMA---PHSMAVVSTATPQTQLQLQQVALQQQQQQQQFQQQQQAALQQQQQQQQQQQF 189
Query: 198 MLSNPDLMRQLIMANPQMQQLIQRNPEISHML-----NNPDIMRQTLELARNPAMMQEMM 252
+ +Q Q QQL Q+ + H++ N I +Q +L R + +
Sbjct: 190 QAQQSAMQQQFQAVVQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQ 249
Query: 253 RNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLVSNTSSGEGSQPS 312
+ Q + + AL+ IQ+P + Q S + Q
Sbjct: 250 QQQQQQQQQQQQ-----QALQAQ-PPIQQPPMQQPQPP---------PSQALPQQLQQMH 294
Query: 313 RTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQST-TAPNLVPGVGASM 371
T++ P P P P +Q+ + S S A GQ T P L +
Sbjct: 295 HTQHHQPPPQPQQPPVAQNQPSQLPPQSQTQPLV-SQAQALPGQMLYTQPPLKFVRAPMV 353
Query: 372 FNTPGMQSLLQQITENPQLMQ-NMLSAPYMRSMMQSLSQN---------PDLAAQMMLNN 421
P +Q +QQ Q Q + AP ++ + ++L+Q P A + ++
Sbjct: 354 VQQPPVQPQVQQQQTAVQTAQAAQMVAPGVQMITEALAQGGMHIRARFPPTTAVSAIPSS 413
Query: 422 PLFAGNPQLQEQMRQQLPTFL-----QQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATE 476
+ G + + + LP QQ+Q P ++ P Q +
Sbjct: 414 SIPLGRQPMAQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGP 473
Query: 477 AP---GLIPGFTPGLGALGSTG--------GSSGTNGSNATPSENTSPTAGTTEPGHQQF 525
AP +P +P T S G + PS SP AG+++ QQ+
Sbjct: 474 APSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPLNTPVNPSSVMSP-AGSSQAEEQQY 532
Query: 526 IQQMLQALAGVNP 538
+ ++ Q + P
Sbjct: 533 LDKLKQLSKYIEP 545
Score = 35.0 bits (79), Expect = 0.19
Identities = 40/155 (25%), Positives = 51/155 (32%), Gaps = 12/155 (7%)
Query: 323 PWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQ 382
P P S S G +G GTSG AP+ + V + TP Q LQ
Sbjct: 103 PRGPGQSLGGMGSLGAMGQPMSLSGQPPPGTSGM---APHSMAVVSTA---TPQTQLQLQ 156
Query: 383 QITENPQLMQNMLSAPYMRSMMQSLSQNPD--LAAQMMLNNPLFAG----NPQLQEQMRQ 436
Q+ Q Q ++ Q Q AQ F QLQ+Q +Q
Sbjct: 157 QVALQQQQQQQQFQQQQQAALQQQQQQQQQQQFQAQQSAMQQQFQAVVQQQQQLQQQQQQ 216
Query: 437 QLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQ 471
Q QN + A LQ+QQ Q
Sbjct: 217 QQHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQ 251
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 40.8 bits (94), Expect = 0.004
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 23/220 (10%)
Query: 297 ASLVSNTSSGEGSQPSR-TENRDPLPN-PWAPQTSQSSSASSGTASTVGGTTGSTASGTS 354
AS T+ G Q S +E PL + P + SS A++ + + + T TAS +
Sbjct: 1551 ASSSPTTADGTSMQTSTYSEGSTPLTSLPVSTMLVVSSEANTLSTTPIDSKTQVTASTEA 1610
Query: 355 GQSTTAPNLVPGVGASM-FNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDL 413
STTA G+SM +TP S L +T P + + P +LS P
Sbjct: 1611 SSSTTAE------GSSMTISTPSEGSPL--LTSIP-----VSTTPVASPEASTLSTTPVD 1657
Query: 414 AAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTL 473
+ ++ + + +P E T+ + +++ + P A A+ TL
Sbjct: 1658 SNSPVITSTEVSSSPTPAEGTSMPTSTYTEGRTPLTSITVRTTPVASSAI-------STL 1710
Query: 474 ATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPSENTSP 513
+T T A S S GT+ N+TPSE T+P
Sbjct: 1711 STTPVDNSTPVTTSTEARSSPTTSEGTSMPNSTPSEGTTP 1750
Score = 34.3 bits (77), Expect = 0.33
Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 24/220 (10%)
Query: 303 TSSGEGSQPSRTENRD-PLPNPW---APQTSQSSSA---SSGTASTVGGTTGSTASG--T 353
TS+ S P+ E P+ P P TS S S +S AST+ T T++ T
Sbjct: 2961 TSAEASSSPTTAEGTSMPISTPGERRTPLTSMSVSTMPVASSEASTLSRTPADTSTPVTT 3020
Query: 354 SGQSTTAPNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDL 413
S +++++P G G + +TP S +T P + + P +LS P
Sbjct: 3021 STEASSSPTTAEGTGIPI-STPSEGST--PLTSIP-----VSTTPVAIPEASTLSTTPVD 3072
Query: 414 AAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTL 473
+ ++ + + +P E + T+ + + + P A+ TL
Sbjct: 3073 SNSPVVTSTEVSSSPTPAEGTSMPISTYSEGSTPLTGVPVSTTPVTSSAI-------STL 3125
Query: 474 ATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPSENTSP 513
+T T A S S GT+ +TPSE ++P
Sbjct: 3126 STTPVDTSTPVTTSTEAHSSPTTSEGTSMPTSTPSEGSTP 3165
Score = 32.3 bits (72), Expect = 1.3
Identities = 63/289 (21%), Positives = 104/289 (35%), Gaps = 56/289 (19%)
Query: 270 NALRRMYTDIQEPMLSAAQEQFGGNPFASLVSNTSSGEGSQ-PSRTENRDPLPN-PWAPQ 327
N L D + P+ + +Q AS T+ G P+ +E PL + P +
Sbjct: 1944 NTLSTTLADTRTPVTTYSQ--------ASSSPTTADGTSMPTPAYSEGSTPLTSMPLSTT 1995
Query: 328 TSQSSSASS-----------GTASTVGGTTGSTASGTSGQSTTAPN-------------- 362
SS AS+ T ST G ++ +TA GTS Q++T
Sbjct: 1996 LVVSSEASTLSTTPVDTSTPATTSTEGSSSPTTAGGTSIQTSTPSERTTPLAGMPVSTTL 2055
Query: 363 LVPGVGASMFNTPGMQSLLQQITENPQLMQNMLS-------------APYMRSMMQSLSQ 409
+V G ++ TP Q+T + + + + +P + S+ S +
Sbjct: 2056 VVSSEGNTLSTTPVDSKT--QVTNSTEASSSATAEGSSMTISAPSEGSPLLTSIPLSTTP 2113
Query: 410 NPDLAAQMMLNNPLFAGNPQLQ--EQMRQQLPTFLQQMQNPDTLSAMSNPRA---MQALL 464
A + P+ + +P + E +PT MQ T S P + +
Sbjct: 2114 VASPEASTLSTTPVDSNSPVITSTEVSSSPIPTEGTSMQT-STYSDRRTPLTSMPVSTTV 2172
Query: 465 QIQQGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPSENTSP 513
+ TL+T T A S S GT+ +TPSE ++P
Sbjct: 2173 VASSAISTLSTTPVDTSTPVTNSTEARSSPTTSEGTSMPTSTPSEGSTP 2221
Score = 32.0 bits (71), Expect = 1.6
Identities = 52/235 (22%), Positives = 80/235 (34%), Gaps = 13/235 (5%)
Query: 283 MLSAAQEQFGGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTV 342
++S+ P S +S E S P T +P + S ++ + V
Sbjct: 1172 VVSSEANTLSTTPVDSKTQVATSTEASSPPPTAEVTSMPTSTPGERSTPLTSMPVRHTPV 1231
Query: 343 GGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRS 402
+ ST S TS T+ P +S T SL T + + S P +
Sbjct: 1232 ASSEASTLS-TSPVDTSTPVTTSAETSSSPTTAEGTSLPTSTTSEGSTL--LTSIPVSTT 1288
Query: 403 MMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNP-DTLSAMSNPRA-- 459
++ S P+ A +L P+ P + PT + P T S P
Sbjct: 1289 LVTS----PE--ASTLLTTPVDTKGPVVTSNEVSSSPTPAEGTSMPTSTYSEGRTPLTSI 1342
Query: 460 -MQALLQIQQGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPSENTSP 513
+ L + L+T T A S S GT+ N+ PSE T+P
Sbjct: 1343 PVNTTLVASSAISILSTTPVDNSTPVTTSTEACSSPTTSEGTSMPNSNPSEGTTP 1397
Score = 30.8 bits (68), Expect = 3.6
Identities = 51/241 (21%), Positives = 87/241 (36%), Gaps = 20/241 (8%)
Query: 292 GGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTAS 351
G P S+ NT+ S+ S T + P+ TS +S+S TA T + +
Sbjct: 686 GSTPLTSMPVNTTLVASSEAS-TLSTTPVDTSTPVTTSTEASSSPTTADGASMPTSTPSE 744
Query: 352 GTSGQST--TAPNLVPGVGASMFNTPGMQ-----------SLLQQITENPQLMQNMLS-- 396
G++ ++ + L+ AS +T + S TE + + S
Sbjct: 745 GSTPLTSMPVSKTLLTSSEASTLSTTPLDTSTHITTSTEASCSPTTTEGTSMPISTPSEG 804
Query: 397 APYMRSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNP-DTLSAMS 455
+P + S+ S++ A + P+ + +P PT + P T S
Sbjct: 805 SPLLTSIPVSITPVTSPEASTLSTTPVDSNSPVTTSTEVSSSPTPAEGTSMPTSTYSEGR 864
Query: 456 NPRA---MQALLQIQQGLQTLATEAPGLIPGFTPGLGALGSTGGSSGTNGSNATPSENTS 512
P + L + TL+T T A S S GT+ +TP E ++
Sbjct: 865 TPLTSMPVSTTLVATSAISTLSTTPVDTSTPVTNSTEARSSPTTSEGTSMPTSTPGEGST 924
Query: 513 P 513
P
Sbjct: 925 P 925
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 40.4 bits (93), Expect = 0.005
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + DQ LIFAGK L+D TLS +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 96 IHDGLTVHLVIKTQNRPQ 113
I T+HLV++ + Q
Sbjct: 61 IQKESTLHLVLRLRGGMQ 78
Score = 40.4 bits (93), Expect = 0.005
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + DQ LIFAGK L+D TLS +
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 96 IHDGLTVHLVIKTQNRPQ 113
I T+HLV++ + Q
Sbjct: 137 IQKESTLHLVLRLRGGMQ 154
Score = 40.0 bits (92), Expect = 0.006
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
M++ VKT K V + +++ K +I + DQ LIFAGK L+D TLS +
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 96 IHDGLTVHLVIK 107
I T+HLV++
Sbjct: 213 IQKESTLHLVLR 224
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 40.4 bits (93), Expect = 0.005
Identities = 66/248 (26%), Positives = 97/248 (39%), Gaps = 45/248 (18%)
Query: 307 EGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPG 366
E + R E+ +P P+ P S S S A++ GG G G + P +
Sbjct: 1060 EVAPKGRQESEEPQPSSSKPSAKSSLSQISSAATSHGGPPGGKGPG-QDRPPLGPTVPYT 1118
Query: 367 VGASMFNTPGMQSLLQQITENP-------------------------QLMQNMLSAPY-M 400
+F+ P Q+ L + P Q M ++LS+PY M
Sbjct: 1119 EALQVFHHPVAQTPLHEKPYLPPPVSLFSFQHLVQHEPGQSPEFFSTQAMSSLLSSPYSM 1178
Query: 401 RSMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMR----QQLPTFLQQMQNPDTLSAMSN 456
+ SL Q P L Q + +P PQL +Q P+FL M P T SA+S+
Sbjct: 1179 PPLPPSLFQAPPLPLQPTVLHPGQLHLPQLMPHPANIPFRQPPSFL-PMPYP-TSSALSS 1236
Query: 457 PRAMQALLQIQQGLQTLATEAPGLIPGFTPGLG--ALGSTGGSSGTNGSN-------ATP 507
+ LQ Q LQ L + +P L A GS G S T S+ A P
Sbjct: 1237 GFFLP--LQSQFALQ-LPGDVESHLPQIKTSLAPLATGSAGLSPSTEYSSDIRLPPVAPP 1293
Query: 508 SENTSPTA 515
+ +++PT+
Sbjct: 1294 ASSSAPTS 1301
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.124 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,655,603
Number of Sequences: 37866
Number of extensions: 1078696
Number of successful extensions: 9689
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 7417
Number of HSP's gapped (non-prelim): 2239
length of query: 589
length of database: 18,247,518
effective HSP length: 108
effective length of query: 481
effective length of database: 14,157,990
effective search space: 6809993190
effective search space used: 6809993190
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.