Search of human proteins with 167004110

Search of human proteins with 167004110

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|167004110 methyltransferase-like protein 1 isoform c [Homo
sapiens]
         (155 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|167004110 methyltransferase-like protein 1 isoform c [Homo sa...   328   1e-90
gi|167004078 methyltransferase-like protein 1 isoform a [Homo sa...   196   7e-51
gi|169168282 PREDICTED: hypothetical protein [Homo sapiens]            31   0.37 
gi|169168103 PREDICTED: hypothetical protein [Homo sapiens]            31   0.37 
gi|169167521 PREDICTED: hypothetical protein [Homo sapiens]            31   0.37 
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora...    28   3.2  
gi|118498345 AT-binding transcription factor 1 [Homo sapiens]          28   3.2  
gi|208022678 hypothetical protein LOC374877 [Homo sapiens]             28   3.2  
gi|76496472 ribosomal protein L3 isoform b [Homo sapiens]              28   3.2  
gi|239751251 PREDICTED: hypothetical protein [Homo sapiens]            28   4.1  
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    28   4.1  
gi|32880208 diaphanous homolog 3 isoform b [Homo sapiens]              27   7.0  
gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens]             27   7.0  
gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens]             27   7.0  
gi|108773808 hypothetical protein LOC51244 [Homo sapiens]              27   7.0  

>gi|167004110 methyltransferase-like protein 1 isoform c [Homo
           sapiens]
          Length = 155

 Score =  328 bits (841), Expect = 1e-90
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLTQN 60
           MAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLTQN
Sbjct: 1   MAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLTQN 60

Query: 61  QSHDDPKDKKEKRAQAQVEFADIGCGYGGLLADKDVLPLPRPTFQADKAQVANHQSHPAS 120
           QSHDDPKDKKEKRAQAQVEFADIGCGYGGLLADKDVLPLPRPTFQADKAQVANHQSHPAS
Sbjct: 61  QSHDDPKDKKEKRAQAQVEFADIGCGYGGLLADKDVLPLPRPTFQADKAQVANHQSHPAS 120

Query: 121 RICLRAKSWGAGVYHNRCAGATRLDVHSFRRAPTV 155
           RICLRAKSWGAGVYHNRCAGATRLDVHSFRRAPTV
Sbjct: 121 RICLRAKSWGAGVYHNRCAGATRLDVHSFRRAPTV 155


>gi|167004078 methyltransferase-like protein 1 isoform a [Homo
          sapiens]
          Length = 276

 Score =  196 bits (498), Expect = 7e-51
 Identities = 91/93 (97%), Positives = 92/93 (98%)

Query: 1  MAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLTQN 60
          MAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLTQN
Sbjct: 1  MAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLTQN 60

Query: 61 QSHDDPKDKKEKRAQAQVEFADIGCGYGGLLAD 93
          QSHDDPKDKKEKRAQAQVEFADIGCGYGGLL +
Sbjct: 61 QSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVE 93


>gi|169168282 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 328

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 56  PLTQNQSHDDPKDKK-------EKRAQAQVEFADIGCGYGGLLADKDVLPLPRPTFQAD 107
           PL+  Q     +DKK         RAQ  +E+    C YG LL ++ ++  P+   Q D
Sbjct: 177 PLSSQQQATSSRDKKPLSSLHLSHRAQVALEYLPFFCTYGCLLEEEGLVLQPKTPLQED 235


>gi|169168103 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 370

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 56  PLTQNQSHDDPKDKK-------EKRAQAQVEFADIGCGYGGLLADKDVLPLPRPTFQAD 107
           PL+  Q     +DKK         RAQ  +E+    C YG LL ++ ++  P+   Q D
Sbjct: 219 PLSSQQQATSSRDKKPLSSLHLSHRAQVALEYLPFFCTYGCLLEEEGLVLQPKTPLQED 277


>gi|169167521 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 290

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 56  PLTQNQSHDDPKDKK-------EKRAQAQVEFADIGCGYGGLLADKDVLPLPRPTFQAD 107
           PL+  Q     +DKK         RAQ  +E+    C YG LL ++ ++  P+   Q D
Sbjct: 139 PLSSQQQATSSRDKKPLSSLHLSHRAQVALEYLPFFCTYGCLLEEEGLVLQPKTPLQED 197


>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
            homolog, Drosophila); translocated to, 4 isoform 1 [Homo
            sapiens]
          Length = 1834

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 10   GAEAPPPQKRY-YRQRAHSNPMADHTLR---YPVKPEEMDWSELYPEFFAPLTQNQ--SH 63
            GA  PPPQ+   Y +    +P +  T +   Y  + EE D S   P  +   T     +H
Sbjct: 1712 GAPPPPPQRNASYLKTQVLSPDSLFTAKFVAYNEEEEEEDCSLAGPNSYPGSTGAAVGAH 1771

Query: 64   DDPKDKKEKRAQAQ 77
            D  +D KEKR+++Q
Sbjct: 1772 DACRDAKEKRSKSQ 1785


>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
          Length = 3703

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 69   KKEKRAQAQVEFADIGCGYGGLLADKDVLPLPRPTFQADKAQVANHQSHPAS 120
            K  + +  ++  ADI   YGGLLA+ D+L +  PT   D   +        S
Sbjct: 1446 KHLETSHLELSEADIQQLYGGLLANGDLLAMGDPTLAEDHTIIVEEDKEEES 1497


>gi|208022678 hypothetical protein LOC374877 [Homo sapiens]
          Length = 505

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 13/115 (11%)

Query: 41  PEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLADKDVLPLP 100
           P  + W     +  +   Q Q+   P   + KRA + VE  D    YG   +++     P
Sbjct: 195 PNTLKWDYTRQDGTSYQRQFQALPGPPALRCKRASSGVELGDCKISYGSTCSEQKQAYRP 254

Query: 101 R--PTFQADKAQVANHQSHPASRICLRAKSWGAGVYHNRCAGATRLDVHSFRRAP 153
           +  P  + DKAQ   H        C+  +  G G++ +R   A     H + R P
Sbjct: 255 QDLPEDRYDKAQATAHIH------CVNIRP-GDGLFRDRTTKAE----HFYAREP 298


>gi|76496472 ribosomal protein L3 isoform b [Homo sapiens]
          Length = 354

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 14/124 (11%)

Query: 18  KRYYRQRAHSNPMADHTLRYPVK----PEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKR 73
           KR + +  H +    H +   V      E++DW+    E   P+ Q    D+  D     
Sbjct: 115 KRRFYKNWHKSKKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMID----- 169

Query: 74  AQAQVEFADIGCGYGGLLADKDVLPLPRPTFQADKAQVANHQSHPASRICLRAKSWGAGV 133
               V     G GY G+ +      LPR T +  +        HPA R+       G   
Sbjct: 170 ----VIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPA-RVAFSVARAGQKG 224

Query: 134 YHNR 137
           YH+R
Sbjct: 225 YHHR 228


>gi|239751251 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 201

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 15/78 (19%)

Query: 80  FADIGCGYGGLLADKDVLPLPRPTFQADKAQVANHQSHP----ASRICLRAKSWGAGVYH 135
           F  +G G G  +     L  P P           H+S P    ASR CL A +  A  + 
Sbjct: 66  FELLGAGAGAAMTRWKSLKAPGP-----------HKSSPCQLVASRQCLSAPALAASFWR 114

Query: 136 NRCAGATRLDVHSFRRAP 153
            + +GA     HS R AP
Sbjct: 115 VQESGAEPPSQHSLRGAP 132


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 120 SRICLRAKSWGAGVYHNRCAGATRLDVHSFRRAP 153
           SR   R++  G G +H R  G  R  +H FR  P
Sbjct: 2   SRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPP 35


>gi|32880208 diaphanous homolog 3 isoform b [Homo sapiens]
          Length = 849

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 47  SELYPEFFAPLTQNQSHDDPKDKKE-KRAQAQVEFADIGCGYGGLLADKDVLPLP 100
           SELY +F    T +Q       KKE K  + Q E       +G L AD ++ PLP
Sbjct: 247 SELYKKFEKEFTDHQETQAELQKKEAKINELQAELQAFKSQFGALPADCNI-PLP 300


>gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens]
          Length = 1193

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 47  SELYPEFFAPLTQNQSHDDPKDKKE-KRAQAQVEFADIGCGYGGLLADKDVLPLP 100
           SELY +F    T +Q       KKE K  + Q E       +G L AD ++ PLP
Sbjct: 510 SELYKKFEKEFTDHQETQAELQKKEAKINELQAELQAFKSQFGALPADCNI-PLP 563


>gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens]
          Length = 2156

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 41   PEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLADKDVLPLP 100
            P   DWS+  P+  +      S DDP D  E   + +     +      L    D++   
Sbjct: 1586 PVTSDWSDYRPDSDSEQPYKTSSDDPNDSGELTQEKEYNIGFVKRAIEKLYGKADII--- 1642

Query: 101  RPTF---QADKAQVANHQS 116
            +P+F      K+QV  + S
Sbjct: 1643 KPSFFPGSTRKSQVCPYNS 1661


>gi|108773808 hypothetical protein LOC51244 [Homo sapiens]
          Length = 467

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 67  KDKKEKRAQAQVEFADIGCGYGGLLADKDVLPLPRPTFQADKAQVANHQSHPASRICLRA 126
           K KK K    + E  D G   G L  + + +P PRP  Q+ K +V   +           
Sbjct: 303 KMKKSKEGGTEEENRD-GDVIGPLPPEPEAVPTPRPAAQSSKVEVIVQERKDTKPGVPHI 361

Query: 127 KSWGAG 132
           + W  G
Sbjct: 362 REWDRG 367


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,988,983
Number of Sequences: 37866
Number of extensions: 314911
Number of successful extensions: 742
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 16
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.