Guide to the Human Genome
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Name: LOC100131960 Sequence: fasta or formatted (201aa) NCBI GI: 239751251
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         23           2
 C cysteine            4.0          8           1
 D aspartate           1.5          3           1
 E glutamate           4.0          8           1
 F phenylalanine       2.5          5           1
 G glycine            10.9         22           2
 H histidine           3.0          6           1
 I isoleucine          1.0          2           1
 K lysine              3.0          6           1
 L leucine            10.0         20           2
 M methionine          1.5          3           1
 N asparagine          0.5          1           1
 P proline            10.0         20           2
 Q glutamine           5.5         11           1
 R arginine            9.5         19           2
 S serine             10.0         20           2
 T threonine           3.0          6           1
 V valine              5.0         10           2
 W tryptophan          4.0          8           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131509          0.400   PREDICTED: similar to inward rectifying K+ channel ...
FAM71E2               0.025   hypothetical protein LOC284418 
SOX9                  0.022   transcription factor SOX9 
AMOT                  0.017   angiomotin isoform 1 
LOC100293578          0.017   PREDICTED: hypothetical protein 
LOC100290886          0.017   PREDICTED: hypothetical protein XP_002346949 
LOC100287742          0.017   PREDICTED: hypothetical protein XP_002343595 
LOC100286960          0.017   PREDICTED: hypothetical protein XP_002342813 
LOC100286960          0.017   PREDICTED: hypothetical protein 
ANKRD43               0.017   ankyrin repeat domain 43 
C9orf86               0.015   Rab-like GTP-binding protein 1 isoform 2 
C9orf86               0.015   Rab-like GTP-binding protein 1 isoform 1 
CABIN1                0.015   calcineurin binding protein 1 
TBKBP1                0.015   TBK1 binding protein 1 
MLL2                  0.012   myeloid/lymphoid or mixed-lineage leukemia 2 
SBF1                  0.012   SET binding factor 1 
LOC643153             0.012   PREDICTED: hypothetical protein 
LOC100292898          0.012   PREDICTED: hypothetical protein 
LOC643153             0.012   PREDICTED: hypothetical protein 
LOC100290742          0.012   PREDICTED: hypothetical protein XP_002346598 
LOC643153             0.012   PREDICTED: hypothetical protein 
LOC100289132          0.012   PREDICTED: hypothetical protein XP_002342440 
ADAM23                0.012   ADAM metallopeptidase domain 23 preproprotein 
PCLO                  0.012   piccolo isoform 2 
PCLO                  0.012   piccolo isoform 1 
LOC100292854          0.012   PREDICTED: hypothetical protein 
LOC100291403          0.012   PREDICTED: hypothetical protein XP_002347170 
LOC100290265          0.012   PREDICTED: hypothetical protein XP_002346787 
LOC100288087          0.012   PREDICTED: hypothetical protein XP_002343063 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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