Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CYP7A1 Sequence: fasta or formatted (504aa) NCBI GI: 166295200
Description:

cytochrome P450, family 7, subfamily A, polypeptide 1

Referenced in:

Bile Acids and Other Cholesterol Derivatives
Cytochrome P450 Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         35           2
 C cysteine            2.2         11           3
 D aspartate           4.6         23           2
 E glutamate           6.0         30           2
 F phenylalanine       5.8         29           1
 G glycine             5.4         27           1
 H histidine           3.4         17           1
 I isoleucine          6.5         33           2
 K lysine              6.5         33           2
 L leucine            12.5         63           1
 M methionine          3.2         16           2
 N asparagine          5.2         26           2
 P proline             4.8         24           2
 Q glutamine           3.2         16           1
 R arginine            5.0         25           3
 S serine              5.6         28           2
 T threonine           6.2         31           2
 V valine              2.6         13           2
 W tryptophan          1.2          6           1
 Y tyrosine            3.6         18           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytochrome P450, family 7, subfamily A, polypeptide... 
CYP7B1                0.322   cytochrome P450, family 7, subfamily B, polypeptide 1...
CYP8B1                0.275   cytochrome P450, family 8, subfamily B, polypeptide...
PTGIS                 0.231   prostaglandin I2 (prostacyclin) synthase 
CYP39A1               0.095   cytochrome P450, family 39, subfamily A, polypeptide...
CYP51A1               0.060   cytochrome P450, family 51, subfamily A, polypeptide ...
CYP4V2                0.056   cytochrome P450, family 4, subfamily v, polypeptide...
CYP27B1               0.042   cytochrome P450, family 27, subfamily B, polypeptide ...
CYP26B1               0.042   cytochrome P450, family 26, subfamily b, polypeptide ...
CYP51A1               0.041   cytochrome P450, family 51, subfamily A, polypeptid...
CYP11B1               0.039   cytochrome P450, family 11, subfamily B, polypeptide...
CYP3A7                0.038   cytochrome P450, family 3, subfamily A, polypeptide 7...
CYP4F11               0.038   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F11               0.038   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F12               0.037   cytochrome P450, family 4, subfamily F, polypeptide...
CYP3A5                0.037   cytochrome P450, family 3, subfamily A, polypeptide 5...
CYP3A4                0.035   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A43               0.034   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP4Z1                0.034   cytochrome P450 4Z1 
CYP3A43               0.032   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP4F8                0.032   cytochrome P450, family 4, subfamily F, polypeptide 8...
CYP2U1                0.032   cytochrome P450, family 2, subfamily U, polypeptide ...
CYP24A1               0.031   cytochrome P450 family 24 subfamily A polypeptide 1 ...
CYP11B2               0.031   cytochrome P450, family 11, subfamily B, polypeptid...
CYP2S1                0.030   cytochrome P450, family 2, subfamily S, polypeptide ...
CYP4X1                0.030   cytochrome P450, family 4, subfamily X, polypeptide ...
CYP2C9                0.029   cytochrome P450, family 2, subfamily C, polypeptide ...
CYP2C8                0.029   cytochrome P450, family 2, subfamily C, polypeptide ...
CYP27C1               0.028   cytochrome P450, family 27, subfamily C, polypeptid...
CYP2E1                0.028   cytochrome P450, family 2, subfamily E, polypeptide ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press