DEPDC1 6892

Name: DEPDC1	Sequence: fasta or formatted (811aa)		NCBI GI: 166295188
Description: DEP domain containing 1 isoform a		Referenced in: Additional Interaction Domain Families
Other entries for this name: alt prot [527aa] DEP domain containing 1 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.8 31 2 C cysteine 2.2 18 2 D aspartate 4.2 34 2 E glutamate 7.3 59 2 F phenylalanine 3.8 31 1 G glycine 4.2 34 2 H histidine 2.6 21 2 I isoleucine 5.4 44 2 K lysine 7.2 58 2 L leucine 12.1 98 3 M methionine 2.5 20 1 N asparagine 6.7 54 2 P proline 5.3 43 3 Q glutamine 5.4 44 2 R arginine 6.2 50 2 S serine 8.9 72 2 T threonine 4.4 36 2 V valine 4.7 38 2 W tryptophan 0.7 6 1 Y tyrosine 2.5 20 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 DEP domain containing 1 isoform a DEPDC1 0.375 DEP domain containing 1 isoform b DEPDC1B 0.182 DEP domain containing 1B isoform 1 DEPDC1B 0.182 DEP domain containing 1B isoform 2 DEPDC7 0.030 novel 58.3 KDA protein isoform 1 DEPDC7 0.029 novel 58.3 KDA protein isoform 2 DEPDC4 0.023 DEP domain containing 4 ARHGAP19 0.016 Rho GTPase activating protein 19 STARD13 0.007 StAR-related lipid transfer (START) domain containin... STARD13 0.007 StAR-related lipid transfer (START) domain containin... STARD13 0.007 StAR-related lipid transfer (START) domain containin... DEPDC6 0.007 DEP domain containing 6 MMS19 0.006 MMS19 nucleotide excision repair homolog LRRIQ1 0.006 leucine-rich repeats and IQ motif containing 1 isof... LRRIQ1 0.006 leucine-rich repeats and IQ motif containing 1 isof... PIKFYVE 0.006 phosphatidylinositol-3-phosphate 5-kinase type III ... PIKFYVE 0.006 phosphatidylinositol-3-phosphate 5-kinase type III i... TNFRSF21 0.005 tumor necrosis factor receptor superfamily, member 21... SETMAR 0.005 SET domain and mariner transposase fusion ARHGAP28 0.005 Rho GTPase activating protein 28 isoform a ARHGAP28 0.005 Rho GTPase activating protein 28 isoform b STARD8 0.005 StAR-related lipid transfer (START) domain containi... STARD8 0.005 StAR-related lipid transfer (START) domain containi... STARD8 0.005 StAR-related lipid transfer (START) domain containin... ARHGAP6 0.005 Rho GTPase activating protein 6 isoform 4 ARHGAP6 0.005 Rho GTPase activating protein 6 isoform 3 ARHGAP6 0.005 Rho GTPase activating protein 6 isoform 1 PLCH1 0.004 phospholipase C eta 1 isoform a PLCH1 0.004 phospholipase C eta 1 isoform b NASP 0.004 nuclear autoantigenic sperm protein isoform 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.