Guide to the Human Genome
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Name: NTNG1 Sequence: fasta or formatted (539aa) NCBI GI: 164414431
Description:

netrin G1 isoform 1

Referenced in:

Netrins and Laminins

Other entries for this name:
alt prot [480aa] netrin G1 isoform 2
alt prot [438aa] netrin G1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         24           2
 C cysteine            7.4         40           1
 D aspartate           5.6         30           2
 E glutamate           5.6         30           2
 F phenylalanine       3.5         19           2
 G glycine             6.9         37           2
 H histidine           3.3         18           1
 I isoleucine          4.8         26           2
 K lysine              4.8         26           2
 L leucine             8.9         48           4
 M methionine          1.9         10           1
 N asparagine          4.8         26           2
 P proline             6.3         34           2
 Q glutamine           3.0         16           1
 R arginine            4.1         22           1
 S serine              6.7         36           2
 T threonine           7.6         41           2
 V valine              4.1         22           1
 W tryptophan          1.7          9           1
 Y tyrosine            4.6         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   netrin G1 isoform 1 
NTNG1                 0.700   netrin G1 isoform 2 
NTNG1                 0.656   netrin G1 isoform 3 
NTNG2                 0.580   netrin G2 
NTN1                  0.188   netrin 1 
LAMC1                 0.173   laminin, gamma 1 precursor 
LAMC3                 0.163   laminin, gamma 3 precursor 
NTN3                  0.151   netrin 3 
NTN4                  0.141   netrin 4 
LAMA5                 0.141   laminin alpha 5 
LAMB4                 0.135   laminin, beta 4 
LAMA3                 0.131   laminin alpha 3 subunit isoform 1 
LAMA3                 0.131   laminin alpha 3 subunit isoform 3 
LAMA1                 0.127   laminin, alpha 1 precursor 
LAMA2                 0.125   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.125   laminin alpha 2 subunit isoform a precursor 
LAMB3                 0.119   laminin, beta 3 precursor 
LAMB3                 0.119   laminin, beta 3 precursor 
LAMB3                 0.119   laminin, beta 3 precursor 
LAMB2                 0.117   laminin, beta 2 precursor 
LAMB1                 0.117   laminin, beta 1 precursor 
USH2A                 0.089   usherin isoform B 
USH2A                 0.089   usherin isoform A 
NTN5                  0.084   netrin 5 
LAMC2                 0.062   laminin, gamma 2 isoform b precursor 
LAMC2                 0.062   laminin, gamma 2 isoform a precursor 
LAMA3                 0.055   laminin alpha 3 subunit isoform 4 
LAMA3                 0.055   laminin alpha 3 subunit isoform 2 
HSPG2                 0.054   heparan sulfate proteoglycan 2 
MEGF9                 0.051   multiple EGF-like-domains 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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