Guide to the Human Genome
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Name: PPP1R15A Sequence: fasta or formatted (674aa) NCBI GI: 157674363
Description:

protein phosphatase 1, regulatory subunit 15A

Referenced in:

Serine / Threonine Protein Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         78           6
 C cysteine            1.2          8           2
 D aspartate           5.9         40           4
 E glutamate          14.7         99           4
 F phenylalanine       1.8         12           2
 G glycine             7.4         50           2
 H histidine           1.6         11           1
 I isoleucine          0.9          6           1
 K lysine              4.2         28           2
 L leucine             6.4         43           2
 M methionine          0.4          3           1
 N asparagine          0.6          4           1
 P proline            10.8         73           4
 Q glutamine           3.3         22           1
 R arginine            7.0         47           2
 S serine              9.3         63           3
 T threonine           5.0         34           2
 V valine              3.9         26           1
 W tryptophan          2.8         19           2
 Y tyrosine            1.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 1, regulatory subunit 15A [Homo... 
RPGR                  0.043   retinitis pigmentosa GTPase regulator isoform C [Hom...
NCL                   0.038   nucleolin 
RP1L1                 0.034   retinitis pigmentosa 1-like 1 
SRCAP                 0.033   Snf2-related CBP activator protein 
CENPB                 0.033   centromere protein B 
NEFH                  0.026   neurofilament, heavy polypeptide 200kDa 
ANP32E                0.026   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.026   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.026   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
PAF1                  0.024   Paf1, RNA polymerase II associated factor, homolog [...
PPP1R15B              0.024   protein phosphatase 1, regulatory subunit 15B [Homo...
MDN1                  0.023   MDN1, midasin homolog 
SMTNL1                0.023   smoothelin-like 1 
ACIN1                 0.023   apoptotic chromatin condensation inducer 1 
MYST4                 0.023   MYST histone acetyltransferase (monocytic leukemia)...
HTATSF1               0.022   HIV-1 Tat specific factor 1 
HTATSF1               0.022   HIV-1 Tat specific factor 1 
MYST3                 0.022   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.022   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.022   MYST histone acetyltransferase (monocytic leukemia)...
NEFM                  0.021   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.021   neurofilament, medium polypeptide 150kDa isoform 2 ...
SETD1A                0.021   SET domain containing 1A 
ARL6IP4               0.021   SRp25 nuclear protein isoform 3 
APOB48R               0.021   apolipoprotein B48 receptor 
EIF3CL                0.021   eukaryotic translation initiation factor 3, subunit...
MICAL3                0.021   microtubule associated monoxygenase, calponin and L...
EIF3C                 0.021   eukaryotic translation initiation factor 3, subunit ...
EIF3C                 0.021   eukaryotic translation initiation factor 3, subunit C...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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