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Search of human proteins with 157502207
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157502207 hypothetical protein LOC54823 [Homo sapiens]
(900 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157502209 hypothetical protein LOC54823 [Homo sapiens] 1786 0.0
gi|157502207 hypothetical protein LOC54823 [Homo sapiens] 1786 0.0
gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor ... 58 3e-08
gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens] 48 4e-05
gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens] 48 4e-05
gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens] 46 2e-04
gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens] 46 2e-04
gi|58530840 desmoplakin isoform I [Homo sapiens] 44 5e-04
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof... 43 0.001
gi|120953243 leucine-rich repeats and IQ motif containing 1 isof... 43 0.001
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 43 0.002
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 40 0.007
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 40 0.007
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens] 39 0.022
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens] 39 0.022
gi|104526627 triadin [Homo sapiens] 39 0.022
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 38 0.048
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 38 0.048
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 37 0.11
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 37 0.11
gi|91754185 hypothetical protein LOC254268 [Homo sapiens] 37 0.11
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 36 0.14
gi|89886470 hypothetical protein LOC84960 [Homo sapiens] 36 0.14
gi|122937227 U2-associated SR140 protein [Homo sapiens] 36 0.14
gi|4885373 histone cluster 1, H1a [Homo sapiens] 35 0.24
gi|222537714 taxilin beta [Homo sapiens] 35 0.31
gi|33356172 nibrin [Homo sapiens] 35 0.31
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens] 35 0.31
gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens] 35 0.31
gi|154354990 ankyrin repeat domain 26 [Homo sapiens] 35 0.31
>gi|157502209 hypothetical protein LOC54823 [Homo sapiens]
Length = 900
Score = 1786 bits (4627), Expect = 0.0
Identities = 900/900 (100%), Positives = 900/900 (100%)
Query: 1 MSSKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHT 60
MSSKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHT
Sbjct: 1 MSSKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHT 60
Query: 61 DVLYYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGT 120
DVLYYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGT
Sbjct: 61 DVLYYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGT 120
Query: 121 KKDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQR 180
KKDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQR
Sbjct: 121 KKDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQR 180
Query: 181 EKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPIKS 240
EKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPIKS
Sbjct: 181 EKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPIKS 240
Query: 241 RDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVTRQKTEHLLSDFTYKRTVHEW 300
RDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVTRQKTEHLLSDFTYKRTVHEW
Sbjct: 241 RDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVTRQKTEHLLSDFTYKRTVHEW 300
Query: 301 KRKHHYDHQESNDSHSRENLTQSFEAPCCSVSSESIQDADQEMQIVEELHAARVGKSVDL 360
KRKHHYDHQESNDSHSRENLTQSFEAPCCSVSSESIQDADQEMQIVEELHAARVGKSVDL
Sbjct: 301 KRKHHYDHQESNDSHSRENLTQSFEAPCCSVSSESIQDADQEMQIVEELHAARVGKSVDL 360
Query: 361 PGELMSMEIDLEDDVHSSSANNTSDRKLLIVIDTNILMNHLKFVRILKTTEVPGFDKLVL 420
PGELMSMEIDLEDDVHSSSANNTSDRKLLIVIDTNILMNHLKFVRILKTTEVPGFDKLVL
Sbjct: 361 PGELMSMEIDLEDDVHSSSANNTSDRKLLIVIDTNILMNHLKFVRILKTTEVPGFDKLVL 420
Query: 421 IIPWVVMQELDRMKEGKLLKRAQHKAIPAVHFINDSLKNQDRKLWGQSIQLASQKHYGLS 480
IIPWVVMQELDRMKEGKLLKRAQHKAIPAVHFINDSLKNQDRKLWGQSIQLASQKHYGLS
Sbjct: 421 IIPWVVMQELDRMKEGKLLKRAQHKAIPAVHFINDSLKNQDRKLWGQSIQLASQKHYGLS 480
Query: 481 DENNDDRVLKCCLQHQELFPCSFVILCTDDRNLRNKGLISGVKSLSKEELSAELLHLSLN 540
DENNDDRVLKCCLQHQELFPCSFVILCTDDRNLRNKGLISGVKSLSKEELSAELLHLSLN
Sbjct: 481 DENNDDRVLKCCLQHQELFPCSFVILCTDDRNLRNKGLISGVKSLSKEELSAELLHLSLN 540
Query: 541 TDVCHQPCIPKQQLKAETTPLKESYKEESTNSGLSILLESIVSDLEKSLGTGLSSILETE 600
TDVCHQPCIPKQQLKAETTPLKESYKEESTNSGLSILLESIVSDLEKSLGTGLSSILETE
Sbjct: 541 TDVCHQPCIPKQQLKAETTPLKESYKEESTNSGLSILLESIVSDLEKSLGTGLSSILETE 600
Query: 601 MKIAFGNLWMEILYLKPPWTLLHLLQCFKKHWLAVFGLVMEKNLLLTIESLYKNLRKANK 660
MKIAFGNLWMEILYLKPPWTLLHLLQCFKKHWLAVFGLVMEKNLLLTIESLYKNLRKANK
Sbjct: 601 MKIAFGNLWMEILYLKPPWTLLHLLQCFKKHWLAVFGLVMEKNLLLTIESLYKNLRKANK 660
Query: 661 AVDFTTVKFLLQDSRSLLHAFSTRSNYDGILPQTFAQVNNLLQTFAEVKTKLKPNSSENT 720
AVDFTTVKFLLQDSRSLLHAFSTRSNYDGILPQTFAQVNNLLQTFAEVKTKLKPNSSENT
Sbjct: 661 AVDFTTVKFLLQDSRSLLHAFSTRSNYDGILPQTFAQVNNLLQTFAEVKTKLKPNSSENT 720
Query: 721 VTKKQEGTSLKNSHNQEITVFSSSHLPQPSRHQEIWSILESVWITIYQNSTDVFQRLGSN 780
VTKKQEGTSLKNSHNQEITVFSSSHLPQPSRHQEIWSILESVWITIYQNSTDVFQRLGSN
Sbjct: 721 VTKKQEGTSLKNSHNQEITVFSSSHLPQPSRHQEIWSILESVWITIYQNSTDVFQRLGSN 780
Query: 781 SALTTSNIASFEEAFICLQKLMAAVRDILEGIQRILAPNSNYQDVETLYNFLIKYEVNKN 840
SALTTSNIASFEEAFICLQKLMAAVRDILEGIQRILAPNSNYQDVETLYNFLIKYEVNKN
Sbjct: 781 SALTTSNIASFEEAFICLQKLMAAVRDILEGIQRILAPNSNYQDVETLYNFLIKYEVNKN 840
Query: 841 VKFTAQEIYDCVSQTEYREKLTIGCRQLVEMEYTMQQCNASVYMEAKNRGWCEDMLNYRI 900
VKFTAQEIYDCVSQTEYREKLTIGCRQLVEMEYTMQQCNASVYMEAKNRGWCEDMLNYRI
Sbjct: 841 VKFTAQEIYDCVSQTEYREKLTIGCRQLVEMEYTMQQCNASVYMEAKNRGWCEDMLNYRI 900
>gi|157502207 hypothetical protein LOC54823 [Homo sapiens]
Length = 900
Score = 1786 bits (4627), Expect = 0.0
Identities = 900/900 (100%), Positives = 900/900 (100%)
Query: 1 MSSKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHT 60
MSSKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHT
Sbjct: 1 MSSKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHT 60
Query: 61 DVLYYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGT 120
DVLYYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGT
Sbjct: 61 DVLYYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGT 120
Query: 121 KKDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQR 180
KKDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQR
Sbjct: 121 KKDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQR 180
Query: 181 EKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPIKS 240
EKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPIKS
Sbjct: 181 EKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPIKS 240
Query: 241 RDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVTRQKTEHLLSDFTYKRTVHEW 300
RDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVTRQKTEHLLSDFTYKRTVHEW
Sbjct: 241 RDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVTRQKTEHLLSDFTYKRTVHEW 300
Query: 301 KRKHHYDHQESNDSHSRENLTQSFEAPCCSVSSESIQDADQEMQIVEELHAARVGKSVDL 360
KRKHHYDHQESNDSHSRENLTQSFEAPCCSVSSESIQDADQEMQIVEELHAARVGKSVDL
Sbjct: 301 KRKHHYDHQESNDSHSRENLTQSFEAPCCSVSSESIQDADQEMQIVEELHAARVGKSVDL 360
Query: 361 PGELMSMEIDLEDDVHSSSANNTSDRKLLIVIDTNILMNHLKFVRILKTTEVPGFDKLVL 420
PGELMSMEIDLEDDVHSSSANNTSDRKLLIVIDTNILMNHLKFVRILKTTEVPGFDKLVL
Sbjct: 361 PGELMSMEIDLEDDVHSSSANNTSDRKLLIVIDTNILMNHLKFVRILKTTEVPGFDKLVL 420
Query: 421 IIPWVVMQELDRMKEGKLLKRAQHKAIPAVHFINDSLKNQDRKLWGQSIQLASQKHYGLS 480
IIPWVVMQELDRMKEGKLLKRAQHKAIPAVHFINDSLKNQDRKLWGQSIQLASQKHYGLS
Sbjct: 421 IIPWVVMQELDRMKEGKLLKRAQHKAIPAVHFINDSLKNQDRKLWGQSIQLASQKHYGLS 480
Query: 481 DENNDDRVLKCCLQHQELFPCSFVILCTDDRNLRNKGLISGVKSLSKEELSAELLHLSLN 540
DENNDDRVLKCCLQHQELFPCSFVILCTDDRNLRNKGLISGVKSLSKEELSAELLHLSLN
Sbjct: 481 DENNDDRVLKCCLQHQELFPCSFVILCTDDRNLRNKGLISGVKSLSKEELSAELLHLSLN 540
Query: 541 TDVCHQPCIPKQQLKAETTPLKESYKEESTNSGLSILLESIVSDLEKSLGTGLSSILETE 600
TDVCHQPCIPKQQLKAETTPLKESYKEESTNSGLSILLESIVSDLEKSLGTGLSSILETE
Sbjct: 541 TDVCHQPCIPKQQLKAETTPLKESYKEESTNSGLSILLESIVSDLEKSLGTGLSSILETE 600
Query: 601 MKIAFGNLWMEILYLKPPWTLLHLLQCFKKHWLAVFGLVMEKNLLLTIESLYKNLRKANK 660
MKIAFGNLWMEILYLKPPWTLLHLLQCFKKHWLAVFGLVMEKNLLLTIESLYKNLRKANK
Sbjct: 601 MKIAFGNLWMEILYLKPPWTLLHLLQCFKKHWLAVFGLVMEKNLLLTIESLYKNLRKANK 660
Query: 661 AVDFTTVKFLLQDSRSLLHAFSTRSNYDGILPQTFAQVNNLLQTFAEVKTKLKPNSSENT 720
AVDFTTVKFLLQDSRSLLHAFSTRSNYDGILPQTFAQVNNLLQTFAEVKTKLKPNSSENT
Sbjct: 661 AVDFTTVKFLLQDSRSLLHAFSTRSNYDGILPQTFAQVNNLLQTFAEVKTKLKPNSSENT 720
Query: 721 VTKKQEGTSLKNSHNQEITVFSSSHLPQPSRHQEIWSILESVWITIYQNSTDVFQRLGSN 780
VTKKQEGTSLKNSHNQEITVFSSSHLPQPSRHQEIWSILESVWITIYQNSTDVFQRLGSN
Sbjct: 721 VTKKQEGTSLKNSHNQEITVFSSSHLPQPSRHQEIWSILESVWITIYQNSTDVFQRLGSN 780
Query: 781 SALTTSNIASFEEAFICLQKLMAAVRDILEGIQRILAPNSNYQDVETLYNFLIKYEVNKN 840
SALTTSNIASFEEAFICLQKLMAAVRDILEGIQRILAPNSNYQDVETLYNFLIKYEVNKN
Sbjct: 781 SALTTSNIASFEEAFICLQKLMAAVRDILEGIQRILAPNSNYQDVETLYNFLIKYEVNKN 840
Query: 841 VKFTAQEIYDCVSQTEYREKLTIGCRQLVEMEYTMQQCNASVYMEAKNRGWCEDMLNYRI 900
VKFTAQEIYDCVSQTEYREKLTIGCRQLVEMEYTMQQCNASVYMEAKNRGWCEDMLNYRI
Sbjct: 841 VKFTAQEIYDCVSQTEYREKLTIGCRQLVEMEYTMQQCNASVYMEAKNRGWCEDMLNYRI 900
>gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor [Homo
sapiens]
Length = 1419
Score = 58.2 bits (139), Expect = 3e-08
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 38/168 (22%)
Query: 386 RKLLIVIDTNILMNHL-KFVRILKTTEVPGFDKLVLIIPWVVMQELDRMKEGK------- 437
R L +V DTN ++HL R+L++ K +L++P +V+ ELD + +G+
Sbjct: 1244 RPLFLVPDTNGFIDHLASLARLLESR------KYILVVPLIVINELDGLAKGQETDHRAG 1297
Query: 438 -LLKRAQHKAIPAVHFINDSLKNQDRKLWG--------QSIQLASQKHYGLSDENNDDRV 488
+ Q KA ++ F+ +++D L +SI S+ G NNDD +
Sbjct: 1298 GYARVVQEKARKSIEFLEQRFESRDSCLRALTSRGNELESIAFRSEDITGQLG-NNDDLI 1356
Query: 489 LKCCLQH-----QELFPCSF---------VILCTDDRNLRNKGLISGV 522
L CCL + ++ P S V+L TDDRNLR K L V
Sbjct: 1357 LSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTRNV 1404
>gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens]
Length = 971
Score = 48.1 bits (113), Expect = 4e-05
Identities = 75/381 (19%), Positives = 158/381 (41%), Gaps = 41/381 (10%)
Query: 10 KETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVLYYNIKR 69
+E + + ++S N G++ +E + + + + E++KL D Y K
Sbjct: 79 QELLKSQQDHSASVNKGQEKAEELHRMEVESLNKMLEELRLERKKLIED------YEGKL 132
Query: 70 RQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGTKKDIHKCVD 129
+ E+DTL+R + S + K KEA + Q G + + K +
Sbjct: 133 NKAQSFYERELDTLKRSQLFTAESLQASKEKEADLRKEFQ---------GQEAILRKTIG 183
Query: 130 FKPKDIKLT--NAGSKLDHGIKSLSSPKIASD---VKPKAEGQASENKWSHLLVQREKMK 184
++++ AGS LD K ++ IA + V K A E + + L +E
Sbjct: 184 KLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVES 243
Query: 185 ELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPIKSRDTL 244
EL R + + + VL+ + ++ + L S + +++ + L
Sbjct: 244 ELAAAR-ERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRVN--------ERL 294
Query: 245 QKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVTRQKTEHLLSDFTYKRTVHEWKRKH 304
+L EE F S ++++++ LE + R + E+ Y+R + + +
Sbjct: 295 SQLEEERAFLRSKTQSLDEEQKQQILELEKKVNEAKRTQQEY------YERELKNLQSRL 348
Query: 305 HYDHQESNDSHSR--ENLTQSFEAPCCSVSSESIQDADQ-EMQIVEELHAARVGKSVD-- 359
+ + N++HS+ E L +V S +I+D + +M + E+ + ++ D
Sbjct: 349 EEEVTQLNEAHSKTLEELAWKHHMAIEAVHSNAIRDKKKLQMDLEEQHNKDKLNLEEDKN 408
Query: 360 -LPGELMSMEIDLEDDVHSSS 379
L EL +++ LED +++++
Sbjct: 409 QLQQELENLKEVLEDKLNTAN 429
>gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]
Length = 1140
Score = 48.1 bits (113), Expect = 4e-05
Identities = 75/381 (19%), Positives = 158/381 (41%), Gaps = 41/381 (10%)
Query: 10 KETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVLYYNIKR 69
+E + + ++S N G++ +E + + + + E++KL D Y K
Sbjct: 199 QELLKSQQDHSASVNKGQEKAEELHRMEVESLNKMLEELRLERKKLIED------YEGKL 252
Query: 70 RQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGTKKDIHKCVD 129
+ E+DTL+R + S + K KEA + Q G + + K +
Sbjct: 253 NKAQSFYERELDTLKRSQLFTAESLQASKEKEADLRKEFQ---------GQEAILRKTIG 303
Query: 130 FKPKDIKLT--NAGSKLDHGIKSLSSPKIASD---VKPKAEGQASENKWSHLLVQREKMK 184
++++ AGS LD K ++ IA + V K A E + + L +E
Sbjct: 304 KLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVES 363
Query: 185 ELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPIKSRDTL 244
EL R + + + VL+ + ++ + L S + +++ + L
Sbjct: 364 ELAAAR-ERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRVN--------ERL 414
Query: 245 QKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVTRQKTEHLLSDFTYKRTVHEWKRKH 304
+L EE F S ++++++ LE + R + E+ Y+R + + +
Sbjct: 415 SQLEEERAFLRSKTQSLDEEQKQQILELEKKVNEAKRTQQEY------YERELKNLQSRL 468
Query: 305 HYDHQESNDSHSR--ENLTQSFEAPCCSVSSESIQDADQ-EMQIVEELHAARVGKSVD-- 359
+ + N++HS+ E L +V S +I+D + +M + E+ + ++ D
Sbjct: 469 EEEVTQLNEAHSKTLEELAWKHHMAIEAVHSNAIRDKKKLQMDLEEQHNKDKLNLEEDKN 528
Query: 360 -LPGELMSMEIDLEDDVHSSS 379
L EL +++ LED +++++
Sbjct: 529 QLQQELENLKEVLEDKLNTAN 549
>gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens]
Length = 2039
Score = 45.8 bits (107), Expect = 2e-04
Identities = 77/370 (20%), Positives = 141/370 (38%), Gaps = 76/370 (20%)
Query: 9 KKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDH----TDVLY 64
K + S ++ + NF E+ K +K S I+ + E+ + +D T +
Sbjct: 708 KDDKSTKEKHVSKERNFKEERDKIKKESEKSFREEKIKDLKEERENIPTDKDSEFTSLGM 767
Query: 65 YNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQI----------ILQS 114
I+ GL + EID ++ I S ++P K + + ++ I
Sbjct: 768 SAIEESIGLHLVEKEIDIEKQEKHIKESKEKPEKRSQIKEKDIEKMERKTFEKEKKIKHE 827
Query: 115 PSSNGTKKDIHKCVD-FKPKD----------------IKLTNAGSKLDHGIKSLSSPKIA 157
S K D+ +CVD K KD K T A K D KS
Sbjct: 828 HKSEKDKLDLSECVDKIKEKDKLYSHHTEKCHKEGEKSKNTAAIKKTDDREKSREKMDRK 887
Query: 158 SDV-KPKAEGQASENKWSHLLVQREKM---KELKKGRNSKFRDNSEKCVLEKWKRNQFSQ 213
D KP+ E +E+K HL+ ++ K E K K ++ + ++ R++ S
Sbjct: 888 HDKEKPEKERHLAESKEKHLMEKKNKQSDNSEYSKSEKGKNKEKDRELDKKEKSRDKESI 947
Query: 214 DYNSNKIIKEPLGS---------RRQKISFK-----IPIKSRDTLQKLVEENVFNIDSNN 259
+ ++K I+E S + +S K P+K+ D +K ++ +ID
Sbjct: 948 NITNSKHIQEEKKSSIVDGNKAQHEKPLSLKEKTKDEPLKTPDGKEK--DKKDKDIDRYK 1005
Query: 260 SKTKQEEREYLES--------------SQVSLNVTRQKTEHLLSD----FTYKR------ 295
+ K +++ + S S + TR K + L++D +++R
Sbjct: 1006 ERDKHKDKIQINSLLKLKSEADKPKPKSSPASKDTRPKEKRLVNDDLMQTSFERMLSLKD 1065
Query: 296 -TVHEWKRKH 304
+ +W +KH
Sbjct: 1066 LEIEQWHKKH 1075
>gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens]
Length = 2062
Score = 45.8 bits (107), Expect = 2e-04
Identities = 77/370 (20%), Positives = 141/370 (38%), Gaps = 76/370 (20%)
Query: 9 KKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDH----TDVLY 64
K + S ++ + NF E+ K +K S I+ + E+ + +D T +
Sbjct: 731 KDDKSTKEKHVSKERNFKEERDKIKKESEKSFREEKIKDLKEERENIPTDKDSEFTSLGM 790
Query: 65 YNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQI----------ILQS 114
I+ GL + EID ++ I S ++P K + + ++ I
Sbjct: 791 SAIEESIGLHLVEKEIDIEKQEKHIKESKEKPEKRSQIKEKDIEKMERKTFEKEKKIKHE 850
Query: 115 PSSNGTKKDIHKCVD-FKPKD----------------IKLTNAGSKLDHGIKSLSSPKIA 157
S K D+ +CVD K KD K T A K D KS
Sbjct: 851 HKSEKDKLDLSECVDKIKEKDKLYSHHTEKCHKEGEKSKNTAAIKKTDDREKSREKMDRK 910
Query: 158 SDV-KPKAEGQASENKWSHLLVQREKM---KELKKGRNSKFRDNSEKCVLEKWKRNQFSQ 213
D KP+ E +E+K HL+ ++ K E K K ++ + ++ R++ S
Sbjct: 911 HDKEKPEKERHLAESKEKHLMEKKNKQSDNSEYSKSEKGKNKEKDRELDKKEKSRDKESI 970
Query: 214 DYNSNKIIKEPLGS---------RRQKISFK-----IPIKSRDTLQKLVEENVFNIDSNN 259
+ ++K I+E S + +S K P+K+ D +K ++ +ID
Sbjct: 971 NITNSKHIQEEKKSSIVDGNKAQHEKPLSLKEKTKDEPLKTPDGKEK--DKKDKDIDRYK 1028
Query: 260 SKTKQEEREYLES--------------SQVSLNVTRQKTEHLLSD----FTYKR------ 295
+ K +++ + S S + TR K + L++D +++R
Sbjct: 1029 ERDKHKDKIQINSLLKLKSEADKPKPKSSPASKDTRPKEKRLVNDDLMQTSFERMLSLKD 1088
Query: 296 -TVHEWKRKH 304
+ +W +KH
Sbjct: 1089 LEIEQWHKKH 1098
>gi|58530840 desmoplakin isoform I [Homo sapiens]
Length = 2871
Score = 44.3 bits (103), Expect = 5e-04
Identities = 73/382 (19%), Positives = 169/382 (44%), Gaps = 49/382 (12%)
Query: 2 SSKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSD--- 58
+S++SC +K+ + + G + + + + + + S K++ + D
Sbjct: 1584 ASEDSCKRKKLEEELE--------GMRRSLKEQAIKITNLTQQLEQASIVKKRSEDDLRQ 1635
Query: 59 HTDVLYYNIKRRQG----LKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYS--------- 105
DVL +++ +Q L+RLS E++ LRR+ S + L+ +
Sbjct: 1636 QRDVLDGHLREKQRTQEELRRLSSEVEALRRQLLQEQESVKQAHLRNEHFQKAIEDKSRS 1695
Query: 106 -NDNQI---ILQSPSSNGTKKDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVK 161
N+++I LQS + N TK+ H ++ + ++++L L G S K A+ ++
Sbjct: 1696 LNESKIEIERLQSLTENLTKE--HLMLEEELRNLRLEY--DDLRRGRSEADSDKNATILE 1751
Query: 162 PKAEGQASENKWSHLLVQREKMKELKKGRNSKFR--DNSEKCVLEKWKRNQFSQDYNSNK 219
+++ Q S N+ L + + +L++ R + + + +K LE R Q S++ +
Sbjct: 1752 LRSQLQISNNRTLEL---QGLINDLQRERENLRQEIEKFQKQALEASNRIQESKN-QCTQ 1807
Query: 220 IIKEPLGSRRQKISFKIPIKSRD--TLQKLVEENVFNIDSNNSKTKQEEREYLESSQVSL 277
+++E R+ + KI + +D LQ+L +E + ++T+ ++R E Q+
Sbjct: 1808 VVQE-----RESLLVKIKVLEQDKARLQRLEDELNRAKSTLEAETRVKQRLECEKQQIQN 1862
Query: 278 NVTRQKTEHLLSDFTYKRTVHEWKRKHHYDHQESNDSHSRENLTQSFEAPCCSVSSESIQ 337
++ + KT++ + ++ E ++ + ++ + + E C ++
Sbjct: 1863 DLNQWKTQYSRKEEAIRKIESEREKSEREKNSLRSEIERLQAEIKRIEERC----RRKLE 1918
Query: 338 DADQEMQIVEELHAARVGKSVD 359
D+ +E Q E +R + +D
Sbjct: 1919 DSTRETQSQLETERSRYQREID 1940
>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform
1 [Homo sapiens]
Length = 1722
Score = 43.1 bits (100), Expect = 0.001
Identities = 84/435 (19%), Positives = 182/435 (41%), Gaps = 68/435 (15%)
Query: 175 HLLVQREKMK---ELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQK 231
HL ++ E+ + + +K +NS + + V + K F IIKE + S+++K
Sbjct: 258 HLQMEEERTRFKDQQEKEKNSLLKQQNNAAVKIQAKYKAFVAYQKYGPIIKEQIESKKRK 317
Query: 232 I------SFKIPIKSRDTLQKLVEENVFNIDSNNSKTKQEEREYLESS-QVSLNVTRQKT 284
KI K + ++L EE I K K+EER+ E + N+ +Q+
Sbjct: 318 AQEWKEKEAKIRQKEEENRKRLEEEQ--RIKEERKKQKEEERKRREKEYEEKKNIVKQER 375
Query: 285 EHLLS--------DFTYKRTVHEWKRKHHYDHQE---SNDSHSRENLTQSFEAPCCSVSS 333
E L+S D + + + +K Y+++ + S+ + ++ ++ V
Sbjct: 376 EQLISKEKIILREDASQQLIISSALKKSGYNNKHLSLEDISNDKGDIAKNL------VDE 429
Query: 334 ESIQDADQEMQIVEELHAARVGKSVDLPGELM-SMEIDLEDDVHSSS------ANNTSDR 386
S + D + +VEE + + ++VD L S+++ L++ + S + ++
Sbjct: 430 NSKKQEDVLLWLVEE---SNMKENVDRQTILKESIQVKLKESISSQTILADFKMEEKNEN 486
Query: 387 KLLIVIDTNILMNHLKFVRILKTTEVPGFDKLVLIIPWVVMQEL--DRMKEGKLLKRAQH 444
++ K+ TE+ D + +QEL D KE K++K
Sbjct: 487 LAKKRCSEELVKQERKYENTDNKTELGNSDLKGNLKEQFPLQELKSDAQKEEKIMK---- 542
Query: 445 KAIPAVHFINDSLKNQDRKLWGQSIQLASQK---HYGLSDENNDDRVLKCCLQHQELFPC 501
H IN++ + + + G + +++ K + +N ++ K ++ +E+
Sbjct: 543 ------HVINENTGQKTQIILGHNQEISEVKTNEEQKIIKDNQQKKIQK--VEKEEI--- 591
Query: 502 SFVILCTDDRNLRNKGLISGVKSLSKEELSAELLHLSLNTDVCHQPCIPKQQLKAETTPL 561
+ L K + V S+ + LS L + DV + ++++ +++ +
Sbjct: 592 ------QEQNGLLYKDKDTLVISVKQRSLS---LTSENSKDVRENVILQEKEIYSKSKEI 642
Query: 562 KESYKEESTNSGLSI 576
+E+ K+ + NSG+ I
Sbjct: 643 EENPKDNAWNSGIVI 657
>gi|120953243 leucine-rich repeats and IQ motif containing 1 isoform
2 [Homo sapiens]
Length = 1336
Score = 43.1 bits (100), Expect = 0.001
Identities = 84/435 (19%), Positives = 182/435 (41%), Gaps = 68/435 (15%)
Query: 175 HLLVQREKMK---ELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQK 231
HL ++ E+ + + +K +NS + + V + K F IIKE + S+++K
Sbjct: 258 HLQMEEERTRFKDQQEKEKNSLLKQQNNAAVKIQAKYKAFVAYQKYGPIIKEQIESKKRK 317
Query: 232 I------SFKIPIKSRDTLQKLVEENVFNIDSNNSKTKQEEREYLESS-QVSLNVTRQKT 284
KI K + ++L EE I K K+EER+ E + N+ +Q+
Sbjct: 318 AQEWKEKEAKIRQKEEENRKRLEEEQ--RIKEERKKQKEEERKRREKEYEEKKNIVKQER 375
Query: 285 EHLLS--------DFTYKRTVHEWKRKHHYDHQE---SNDSHSRENLTQSFEAPCCSVSS 333
E L+S D + + + +K Y+++ + S+ + ++ ++ V
Sbjct: 376 EQLISKEKIILREDASQQLIISSALKKSGYNNKHLSLEDISNDKGDIAKNL------VDE 429
Query: 334 ESIQDADQEMQIVEELHAARVGKSVDLPGELM-SMEIDLEDDVHSSS------ANNTSDR 386
S + D + +VEE + + ++VD L S+++ L++ + S + ++
Sbjct: 430 NSKKQEDVLLWLVEE---SNMKENVDRQTILKESIQVKLKESISSQTILADFKMEEKNEN 486
Query: 387 KLLIVIDTNILMNHLKFVRILKTTEVPGFDKLVLIIPWVVMQEL--DRMKEGKLLKRAQH 444
++ K+ TE+ D + +QEL D KE K++K
Sbjct: 487 LAKKRCSEELVKQERKYENTDNKTELGNSDLKGNLKEQFPLQELKSDAQKEEKIMK---- 542
Query: 445 KAIPAVHFINDSLKNQDRKLWGQSIQLASQK---HYGLSDENNDDRVLKCCLQHQELFPC 501
H IN++ + + + G + +++ K + +N ++ K ++ +E+
Sbjct: 543 ------HVINENTGQKTQIILGHNQEISEVKTNEEQKIIKDNQQKKIQK--VEKEEI--- 591
Query: 502 SFVILCTDDRNLRNKGLISGVKSLSKEELSAELLHLSLNTDVCHQPCIPKQQLKAETTPL 561
+ L K + V S+ + LS L + DV + ++++ +++ +
Sbjct: 592 ------QEQNGLLYKDKDTLVISVKQRSLS---LTSENSKDVRENVILQEKEIYSKSKEI 642
Query: 562 KESYKEESTNSGLSI 576
+E+ K+ + NSG+ I
Sbjct: 643 EENPKDNAWNSGIVI 657
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 42.7 bits (99), Expect = 0.002
Identities = 80/391 (20%), Positives = 153/391 (39%), Gaps = 32/391 (8%)
Query: 3 SKESCGKKETS-QRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTD 61
SK+S ET+ + +++ T S N +KDKK+ K + T++ + + ++ K+ LK T
Sbjct: 172 SKKSKSSSETNPESQNSKTVSKNCSQKDKKDSKN-SKKTNTEFLHTKNNPKKDLKRSKTS 230
Query: 62 VLYYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIK----LKEASYSNDNQIILQ--SP 115
N + S+ +D L +G S I L+ S +N L+
Sbjct: 231 ----NDPISEICSENSLNVDFLM---LVGQSDDESINFDAWLRNYSQNNSKNYSLKYTKY 283
Query: 116 SSNGTKKDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSH 175
+ TKK+ K D + +D K SK K++ DVK E +E+ S
Sbjct: 284 TKKDTKKNAKKSSDAESEDSKDAKKDSKKVK--KNVKKDDKKKDVKKDTESTDAESGDS- 340
Query: 176 LLVQREKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFK 235
+++ K+ KK + +D+ +K K+ S D S SR K + K
Sbjct: 341 ----KDERKDTKKDKKKLKKDDKKK----DTKKYPESTDTESGDAKDARNDSRNLKKASK 392
Query: 236 IPIKSRDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVTRQKTEHLLSDFTYKR 295
K +D + + + + K E+++ +S + + E +D K
Sbjct: 393 NDDKKKDAKKITFSTDSESELESKESQKDEKKDKKDSKTDNKKSVKNDEESTDADSEPKG 452
Query: 296 TVHEWKRKHHYDHQESNDSHSRENLTQSFEAPCCSVSSESIQDADQEMQIVEELHAARVG 355
+ K+ ++S +++ ++ E S ES + ++ + +E ++
Sbjct: 453 DSKKGKKDEKKGKKDSKKDDKKKDAKKNAE----STEMESDLELKKDKKHSKEKKGSK-- 506
Query: 356 KSVDLPGELMSMEIDLEDDVHSSSANNTSDR 386
K + + D E D S + TS +
Sbjct: 507 KDIKKDARKDTESTDAEFDESSKTGFKTSTK 537
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 40.4 bits (93), Expect = 0.007
Identities = 93/454 (20%), Positives = 170/454 (37%), Gaps = 78/454 (17%)
Query: 12 TSQRKDTTTSSPNFGEKDKKERKTP----ASSTSSSSIRSV-----SSEKRKLKSDHTDV 62
+ +++ T + S N+ + +KE K+ A+ T+ I + S +++ K +
Sbjct: 766 SKKKRQTQSESSNYDSELEKEIKSMSKIGAARTTKKRIPNTKDFDSSEDEKHSKKGMDNQ 825
Query: 63 LYYNIK-----------RRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQII 111
+ N+K R+Q + S T+ + I R K ++AS S D
Sbjct: 826 GHKNLKTSQEGSSDDAERKQERETFSSAEGTVDKDTTIMELRDRLPKKQQASASTDGVDK 885
Query: 112 LQSPSSNGTKKDIHKCVDFKPKDIKL-TNAGSKLDHGIKSLS--------SPKIASDVKP 162
L + T ++ K + K K L T K+ G+ ++ S + + D K
Sbjct: 886 LSGKEQSFTSLEVRKVAETKEKSKHLKTKTCKKVQDGLSDIAEKFLKKDQSDETSEDDKK 945
Query: 163 KAEGQASENK----WSHLLVQREKMKELKKGRNSKFRDNSEKCVLEKW----KRNQFSQD 214
+++ E K + +++ E+ E K + E C K K +
Sbjct: 946 QSKKGTEEKKKPSDFKKKVIKMEQQYESSSDGTEKLPEREEICHFPKGIKQIKNGTTDGE 1005
Query: 215 YNSNKIIKEPLGSRRQKISFKIPIKSRDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQ 274
S KI R K S K +D L E++ DS +S ++ + +
Sbjct: 1006 KKSKKI--------RDKTS-----KKKDELSDYAEKSTGKGDSCDSSEDKKSKNGAYGRE 1052
Query: 275 VS----LNVTRQKTEHLLSDFTYKRTVHEW------KRKHHYDHQESNDSHSRENLTQSF 324
L + +K + S T K ++ E KR + +E + S+ N +
Sbjct: 1053 KKRCKLLGKSSRKRQDCSSSDTEKYSMKEDGCNSSDKRLKRIELRERRNLSSKRNTKEIQ 1112
Query: 325 EAPCCSVSSESIQDADQEMQ---------IVEE-----LHAARVGKSVDLPGELMSMEID 370
S + ES +D ++ Q IV+E L + K D+ S D
Sbjct: 1113 SGSSSSDAEESSEDNKKKKQRTSSKKKAVIVKEKKRNSLRTSTKRKQADITSSSSS---D 1169
Query: 371 LEDDVHSSSANNTSD-RKLLIVIDTNILMNHLKF 403
+EDD +S +SD +K+ V + +L +H F
Sbjct: 1170 IEDDDQNSIGEGSSDEQKIKPVTENLVLSSHTGF 1203
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 40.4 bits (93), Expect = 0.007
Identities = 93/454 (20%), Positives = 170/454 (37%), Gaps = 78/454 (17%)
Query: 12 TSQRKDTTTSSPNFGEKDKKERKTP----ASSTSSSSIRSV-----SSEKRKLKSDHTDV 62
+ +++ T + S N+ + +KE K+ A+ T+ I + S +++ K +
Sbjct: 804 SKKKRQTQSESSNYDSELEKEIKSMSKIGAARTTKKRIPNTKDFDSSEDEKHSKKGMDNQ 863
Query: 63 LYYNIK-----------RRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQII 111
+ N+K R+Q + S T+ + I R K ++AS S D
Sbjct: 864 GHKNLKTSQEGSSDDAERKQERETFSSAEGTVDKDTTIMELRDRLPKKQQASASTDGVDK 923
Query: 112 LQSPSSNGTKKDIHKCVDFKPKDIKL-TNAGSKLDHGIKSLS--------SPKIASDVKP 162
L + T ++ K + K K L T K+ G+ ++ S + + D K
Sbjct: 924 LSGKEQSFTSLEVRKVAETKEKSKHLKTKTCKKVQDGLSDIAEKFLKKDQSDETSEDDKK 983
Query: 163 KAEGQASENK----WSHLLVQREKMKELKKGRNSKFRDNSEKCVLEKW----KRNQFSQD 214
+++ E K + +++ E+ E K + E C K K +
Sbjct: 984 QSKKGTEEKKKPSDFKKKVIKMEQQYESSSDGTEKLPEREEICHFPKGIKQIKNGTTDGE 1043
Query: 215 YNSNKIIKEPLGSRRQKISFKIPIKSRDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQ 274
S KI R K S K +D L E++ DS +S ++ + +
Sbjct: 1044 KKSKKI--------RDKTS-----KKKDELSDYAEKSTGKGDSCDSSEDKKSKNGAYGRE 1090
Query: 275 VS----LNVTRQKTEHLLSDFTYKRTVHEW------KRKHHYDHQESNDSHSRENLTQSF 324
L + +K + S T K ++ E KR + +E + S+ N +
Sbjct: 1091 KKRCKLLGKSSRKRQDCSSSDTEKYSMKEDGCNSSDKRLKRIELRERRNLSSKRNTKEIQ 1150
Query: 325 EAPCCSVSSESIQDADQEMQ---------IVEE-----LHAARVGKSVDLPGELMSMEID 370
S + ES +D ++ Q IV+E L + K D+ S D
Sbjct: 1151 SGSSSSDAEESSEDNKKKKQRTSSKKKAVIVKEKKRNSLRTSTKRKQADITSSSSS---D 1207
Query: 371 LEDDVHSSSANNTSD-RKLLIVIDTNILMNHLKF 403
+EDD +S +SD +K+ V + +L +H F
Sbjct: 1208 IEDDDQNSIGEGSSDEQKIKPVTENLVLSSHTGF 1241
>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
Length = 1173
Score = 38.9 bits (89), Expect = 0.022
Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 27/271 (9%)
Query: 9 KKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVLYYNIK 68
K+E + DT +S K ++++ I+ + S +LKS+ + N++
Sbjct: 693 KQEKQHKLDTVSSKIELNRKLIQDQQ--------EQIQHLKSTTNELKSEKLQIST-NLQ 743
Query: 69 RRQGLK----RLSVEIDTLRRRPKIGSSSQRPIKLKEASYSND-NQIILQSPSSNGTKKD 123
RRQ L+ LS E+ +L R K P++ + + ++I + +SN +D
Sbjct: 744 RRQQLEEQTVELSTEVQSLYREIKDAKEQVSPLETTLEKFQQEKEELINKKNTSNKIAQD 803
Query: 124 IHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQREKM 183
K D K K + +++ I+ D K + E + NK L + EK
Sbjct: 804 --KLNDIKEKVKNIHGYMKDIENYIQDGK-----DDYKKQKETEL--NKVIAQLSECEKH 854
Query: 184 KE-LKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQ--KISFKIPIKS 240
KE + + +D + + E+W ++ + N+ +KE R+Q K ++ +
Sbjct: 855 KEKINEDMRLMRQDIDTQKIQERWLQDNLTL-RKRNEELKEVEEERKQHLKEMGQMQVLQ 913
Query: 241 RDTLQKLVEENVFNIDSNNSKTKQEEREYLE 271
+ + +EEN+ NI N++ ++ Y E
Sbjct: 914 MKSEHQKLEENIDNIKRNHNLALGRQKGYEE 944
>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
Length = 1312
Score = 38.9 bits (89), Expect = 0.022
Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 27/271 (9%)
Query: 9 KKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVLYYNIK 68
K+E + DT +S K ++++ I+ + S +LKS+ + N++
Sbjct: 832 KQEKQHKLDTVSSKIELNRKLIQDQQ--------EQIQHLKSTTNELKSEKLQIST-NLQ 882
Query: 69 RRQGLK----RLSVEIDTLRRRPKIGSSSQRPIKLKEASYSND-NQIILQSPSSNGTKKD 123
RRQ L+ LS E+ +L R K P++ + + ++I + +SN +D
Sbjct: 883 RRQQLEEQTVELSTEVQSLYREIKDAKEQVSPLETTLEKFQQEKEELINKKNTSNKIAQD 942
Query: 124 IHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQREKM 183
K D K K + +++ I+ D K + E + NK L + EK
Sbjct: 943 --KLNDIKEKVKNIHGYMKDIENYIQDGK-----DDYKKQKETEL--NKVIAQLSECEKH 993
Query: 184 KE-LKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQ--KISFKIPIKS 240
KE + + +D + + E+W ++ + N+ +KE R+Q K ++ +
Sbjct: 994 KEKINEDMRLMRQDIDTQKIQERWLQDNLTL-RKRNEELKEVEEERKQHLKEMGQMQVLQ 1052
Query: 241 RDTLQKLVEENVFNIDSNNSKTKQEEREYLE 271
+ + +EEN+ NI N++ ++ Y E
Sbjct: 1053 MKSEHQKLEENIDNIKRNHNLALGRQKGYEE 1083
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 38.9 bits (89), Expect = 0.022
Identities = 64/297 (21%), Positives = 114/297 (38%), Gaps = 32/297 (10%)
Query: 9 KKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVLYYNIK 68
K +T+++ + T G K +K ++T A ++ S K K + V + K
Sbjct: 207 KAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKEVQ--KTPSKPKEKEDKEKAAVSKHEQK 264
Query: 69 RRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGTKKDIHKCV 128
+ R ++I + K G S P L S G KK K V
Sbjct: 265 DQYAFCRYMIDI-FVHGDLKPGQSPAIPPPLPTEQASRPTPASPALEEKEGEKKKAEKKV 323
Query: 129 DFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLV-------QRE 181
+ K K IK S + A DV+ K G+ASE K + + + E
Sbjct: 324 TSETK--------KKEKEDIKKKSEKETAIDVEKKEPGKASETKQGTVKIAAQAAAKKDE 375
Query: 182 KMKELKKGR--------NSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKI- 232
K ++ KK + K ++ EK V E K + S+K +K +++I
Sbjct: 376 KKEDSKKTKKPAEVEQPKGKKQEKKEKHV-EPAKSPKKEHSVPSDKQVKAKTERAKEEIG 434
Query: 233 --SFK--IPIKSRDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVTRQKTE 285
S K +P K + K VE+ + S + + +++E ++ + + + ++ E
Sbjct: 435 AVSIKKAVPGKKEEKTTKTVEQEIRKEKSGKTSSILKDKEPIKGKEEKVPASLKEKE 491
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 37.7 bits (86), Expect = 0.048
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 4 KESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVL 63
KE KE + KD + +KDKK R P S +S RS S E+R+ +S +
Sbjct: 449 KEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSS-- 506
Query: 64 YYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGTKKD 123
+ + + +KR S + R R K + KE + ++ + +S S + D
Sbjct: 507 -RSPRTSKTIKRKSSRSPSPRSRNKKDKKRE-----KERDHISERRERERSTSMRKSSND 560
Query: 124 IHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSH 175
D K K K + + + +H + SS ++ +V K + ENK H
Sbjct: 561 ----RDGKEKLEKNSTSLKEKEHNKEPDSS--VSKEVDDKDAPRTEENKIQH 606
Score = 34.3 bits (77), Expect = 0.54
Identities = 55/262 (20%), Positives = 93/262 (35%), Gaps = 30/262 (11%)
Query: 4 KESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVL 63
KE +KE + K+ KD+ + + R EK K +
Sbjct: 391 KEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKE 450
Query: 64 YYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGTKKD 123
K ++ K S EID R++ K + R S S SS ++
Sbjct: 451 KEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRS----------SSRERRRR 500
Query: 124 IHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQREKM 183
+ P+ K KS SP S K + + E + H+ +RE+
Sbjct: 501 RSRSSSRSPRTSKTIKR--------KSSRSPSPRSRNK---KDKKREKERDHISERRERE 549
Query: 184 KELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPIKSRDT 243
+ ++S RD EK LEK + +++N KEP S +++ K ++ +
Sbjct: 550 RSTSMRKSSNDRDGKEK--LEKNSTSLKEKEHN-----KEPDSSVSKEVDDKDAPRTEE- 601
Query: 244 LQKLVEENVFNIDSNNSKTKQE 265
K+ ++ N TK E
Sbjct: 602 -NKIQHNGNCQLNEENLSTKTE 622
Score = 30.8 bits (68), Expect = 5.9
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 2 SSKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTD 61
SS S +T +RK + + SP K K+R+ S R S+ RK +D
Sbjct: 504 SSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDG 563
Query: 62 VLYYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQI 110
++ L++ S + + SS + + K+A + +N+I
Sbjct: 564 --------KEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKI 604
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 37.7 bits (86), Expect = 0.048
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 4 KESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVL 63
KE KE + KD + +KDKK R P S +S RS S E+R+ +S +
Sbjct: 333 KEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSS-- 390
Query: 64 YYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGTKKD 123
+ + + +KR S + R R K + KE + ++ + +S S + D
Sbjct: 391 -RSPRTSKTIKRKSSRSPSPRSRNKKDKKRE-----KERDHISERRERERSTSMRKSSND 444
Query: 124 IHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSH 175
D K K K + + + +H + SS ++ +V K + ENK H
Sbjct: 445 ----RDGKEKLEKNSTSLKEKEHNKEPDSS--VSKEVDDKDAPRTEENKIQH 490
Score = 34.3 bits (77), Expect = 0.54
Identities = 55/262 (20%), Positives = 93/262 (35%), Gaps = 30/262 (11%)
Query: 4 KESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVL 63
KE +KE + K+ KD+ + + R EK K +
Sbjct: 275 KEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKE 334
Query: 64 YYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGTKKD 123
K ++ K S EID R++ K + R S S SS ++
Sbjct: 335 KEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRS----------SSRERRRR 384
Query: 124 IHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQREKM 183
+ P+ K KS SP S K + + E + H+ +RE+
Sbjct: 385 RSRSSSRSPRTSKTIKR--------KSSRSPSPRSRNK---KDKKREKERDHISERRERE 433
Query: 184 KELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPIKSRDT 243
+ ++S RD EK LEK + +++N KEP S +++ K ++ +
Sbjct: 434 RSTSMRKSSNDRDGKEK--LEKNSTSLKEKEHN-----KEPDSSVSKEVDDKDAPRTEE- 485
Query: 244 LQKLVEENVFNIDSNNSKTKQE 265
K+ ++ N TK E
Sbjct: 486 -NKIQHNGNCQLNEENLSTKTE 506
Score = 30.8 bits (68), Expect = 5.9
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 2 SSKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTD 61
SS S +T +RK + + SP K K+R+ S R S+ RK +D
Sbjct: 388 SSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDG 447
Query: 62 VLYYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQI 110
++ L++ S + + SS + + K+A + +N+I
Sbjct: 448 --------KEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKI 488
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 36.6 bits (83), Expect = 0.11
Identities = 56/270 (20%), Positives = 105/270 (38%), Gaps = 31/270 (11%)
Query: 10 KETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVS---------SEKRKLKSDHT 60
KE ++ + + S + G R + SST SSS S S S K K H+
Sbjct: 500 KEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHS 559
Query: 61 DVLYYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGT 120
IK R+ R + RR KI S+ R +K+++ SN N I + +
Sbjct: 560 RSRSPTIKARRSRSR------SYSRRIKIESNRAR-VKIRDRRRSNRNSIERERRRNRSP 612
Query: 121 KKDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPK---IASDVKPKAEGQASENKWSHLL 177
++ + + +D + A + + + + K K E + E K
Sbjct: 613 SRERRRSRS-RSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERK----- 666
Query: 178 VQREKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIP 237
+E+ + + K R K ++ + K K+ + +D+ K + +R++ S +
Sbjct: 667 --KERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDF---KFSSQDDRLKRKRESERTF 721
Query: 238 IKSRDTLQKLVEENVFNIDSNNSKTKQEER 267
+S K++ + DS S TK ++
Sbjct: 722 SRSGSISVKIIRHD-SRQDSKKSTTKDSKK 750
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 36.6 bits (83), Expect = 0.11
Identities = 56/270 (20%), Positives = 105/270 (38%), Gaps = 31/270 (11%)
Query: 10 KETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVS---------SEKRKLKSDHT 60
KE ++ + + S + G R + SST SSS S S S K K H+
Sbjct: 500 KEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHS 559
Query: 61 DVLYYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGT 120
IK R+ R + RR KI S+ R +K+++ SN N I + +
Sbjct: 560 RSRSPTIKARRSRSR------SYSRRIKIESNRAR-VKIRDRRRSNRNSIERERRRNRSP 612
Query: 121 KKDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPK---IASDVKPKAEGQASENKWSHLL 177
++ + + +D + A + + + + K K E + E K
Sbjct: 613 SRERRRSRS-RSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERK----- 666
Query: 178 VQREKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIP 237
+E+ + + K R K ++ + K K+ + +D+ K + +R++ S +
Sbjct: 667 --KERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDF---KFSSQDDRLKRKRESERTF 721
Query: 238 IKSRDTLQKLVEENVFNIDSNNSKTKQEER 267
+S K++ + DS S TK ++
Sbjct: 722 SRSGSISVKIIRHD-SRQDSKKSTTKDSKK 750
>gi|91754185 hypothetical protein LOC254268 [Homo sapiens]
Length = 836
Score = 36.6 bits (83), Expect = 0.11
Identities = 55/297 (18%), Positives = 110/297 (37%), Gaps = 34/297 (11%)
Query: 5 ESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVLY 64
E+CG + T + +KD+KE++ A+ + ++E KS +D+L
Sbjct: 62 ETCGNTAVTIPLGKITENAA-NKKDEKEKQCTAA------LHIPANEGDASKSSISDILL 114
Query: 65 YNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDN------------QIIL 112
+++ + L+ ++ +TL S + I S N N Q+
Sbjct: 115 HHLSKEPFLRGQGIDCETLPEISNADSFEEEAIIKSIISCYNKNSWPKEQTPELTDQLNP 174
Query: 113 QSPSSNGTKKDIHKCVDFKPKDIKLTNAGSKLDH--GIKSLSSPKIASDVKPKAEGQASE 170
+ N K + D++ A H + L+ K D + +GQ+
Sbjct: 175 KRDGENSNKPGSATTTEENTSDLEGPVAAGDSSHQENVNVLTKTKGPGDKQKSYQGQSP- 233
Query: 171 NKWSHLLVQREKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQ 230
Q+++ ++ G K+ L + + NKII +PL +Q
Sbjct: 234 --------QKQQTEKANSGNTFKYGQGQVHYQLPDFSKIAPKVKIPKNKIINKPLAIAKQ 285
Query: 231 KISFKIPIKSRDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVTRQKTEHL 287
KSRD LV++++ +N KQ + + + ++ S + + H+
Sbjct: 286 A---SFSSKSRDK-PTLVQDSLETTPESNCVEKQHQEQKGKITEPSQQIQMEPIVHI 338
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 36.2 bits (82), Expect = 0.14
Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 46/273 (16%)
Query: 88 KIGSSSQRPIKLKEASYSNDNQIILQSPSSNGTK----KDIHKCVDFKPKDIKLTNA-GS 142
+I + + P+++KE + D++ + +SP+ K KD HK + K +DI+ +
Sbjct: 390 EIKENQRSPVRVKERKIT-DHRNVSESPNRKNEKEKKVKD-HKS-NSKERDIRRNSEKDD 446
Query: 143 KLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQR----------EKMKELKKGRNS 192
K + +K + K S K K++ + ++K + +R E +KE +K +S
Sbjct: 447 KYKNKVKKRAKSKSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDS 506
Query: 193 KFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPI-------------- 238
K +D EK K+ + + + + KE R Q S + I
Sbjct: 507 KGKDQERSRSKEKSKQLESKSNEHDHSKSKEK-DRRAQSRSRECDITKGKHSYNSRTRER 565
Query: 239 -KSRDTLQKLVEENVFNIDSNNSKT--KQEEREYLESSQVSLNVTR---------QKTEH 286
+SRD ++ V + D + SK + E+EY + R +
Sbjct: 566 SRSRDRSRR-VRSRTHDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKDRRRR 624
Query: 287 LLSDFTYKRTVHEWKRKHHYDHQESNDSHSREN 319
+ +R + + K Y +QES SH +EN
Sbjct: 625 RRDSRSSEREESQSRNKDKYRNQESKSSHRKEN 657
Score = 36.2 bits (82), Expect = 0.14
Identities = 60/281 (21%), Positives = 114/281 (40%), Gaps = 30/281 (10%)
Query: 3 SKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRK---LKSDH 59
SKE K ++ K + S ++ KE++ + S RS S EK K KS+
Sbjct: 470 SKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKGKDQERSRSKEKSKQLESKSNE 529
Query: 60 TDVLYYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPS--- 116
D K R+ R S E D + + S + +E S S D ++S +
Sbjct: 530 HDHSKSKEKDRRAQSR-SRECDITKGKHSYNS------RTRERSRSRDRSRRVRSRTHDR 582
Query: 117 SNGTKKDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHL 176
K+ H+ + + + + + + +S S + + + + ++SE + S
Sbjct: 583 DRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKDR----RRRRRDSRSSEREESQS 638
Query: 177 LVQREKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKI 236
+ + + K + K SEK + K S+D+NS+ +E R Q KI
Sbjct: 639 RNKDKYRNQESKSSHRKENSESEKRMYSK------SRDHNSSNNSREKKADRDQSPFSKI 692
Query: 237 PIKSRDT------LQKLVEENV-FNIDSNNSKTKQEEREYL 270
S+D L+ +E + +++ N K+K +E +++
Sbjct: 693 KQSSQDNELKSSMLKNKEDEKIRSSVEKENQKSKGQENDHV 733
>gi|89886470 hypothetical protein LOC84960 [Homo sapiens]
Length = 534
Score = 36.2 bits (82), Expect = 0.14
Identities = 43/203 (21%), Positives = 85/203 (41%), Gaps = 12/203 (5%)
Query: 43 SSIRSVSSEKRKLKSDHTDV---LYYNIKRR-QGLKRLSVEIDTLRRRPKIGSSSQRPIK 98
S++ V + RK D ++ L + ++RR Q L+ + +E+D+LR +P R ++
Sbjct: 87 STMEVVREKLRKYVFDRVNMHNLLIHLVRRRGQKLESMQLELDSLRSQPDASKEELRLLQ 146
Query: 99 LKEASYSNDNQIILQSPSSNGTKKDIHKCVDFKPK-----DIKLTNAGSKLDHGIKSLSS 153
+ +N + +++ +S +D+ I+L + + + LS
Sbjct: 147 IIRQLENNIEKTMIKIITSQNIHLLYLDLLDYLKTVLAGYPIELDKLQNLVVNYCSELSD 206
Query: 154 PKIASDVKPKAEGQASENKWSH--LLVQREKMKELKKGRNSKFRDNSE-KCVLEKWKRNQ 210
KI S + N ++ + +E + + K D K EK++R Q
Sbjct: 207 MKIMSQDAMMITDEVKRNMRQREASFIEERRARENRLNQQKKLIDKIHTKETSEKYRRGQ 266
Query: 211 FSQDYNSNKIIKEPLGSRRQKIS 233
D+ SN + E L RR++ S
Sbjct: 267 MDLDFPSNLMSTETLKLRRKETS 289
>gi|122937227 U2-associated SR140 protein [Homo sapiens]
Length = 1029
Score = 36.2 bits (82), Expect = 0.14
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 155 KIASDVKPKAEGQASENKWSHL---LVQREKMKELKKGRNSKFRDNSEKCVLEKWKRNQF 211
++ S +PK GQ+ + + H L+QREK KEL++ R RD +K LE +++
Sbjct: 857 ELESGKRPKKPGQSFQEQVEHYRDKLLQREKEKELERERE---RDKKDKEKLESRSKDKK 913
Query: 212 SQDYNSNKIIKEPLGSRRQKISFKIPIKSRDTLQKLVEENVFNIDSNNSKTKQEEREYLE 271
+D + P R++ P SR + + V+ + + ++++ ER + E
Sbjct: 914 EKDECT------PTRKERKRRHSTSPSPSRSSSGRRVK----SPSPKSERSERSERSHKE 963
Query: 272 SSQ 274
SS+
Sbjct: 964 SSR 966
>gi|4885373 histone cluster 1, H1a [Homo sapiens]
Length = 215
Score = 35.4 bits (80), Expect = 0.24
Identities = 50/198 (25%), Positives = 75/198 (37%), Gaps = 28/198 (14%)
Query: 23 PNFGEKDKKERKTPASS----------------TSSSSIR---SVSSEKRKLKSDHTDVL 63
P G+K KK K A+S SSS R S+++ K+ L + DV
Sbjct: 18 PLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGVSLAALKKALAAAGYDVE 77
Query: 64 YYNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQI--ILQSPSSNGTK 121
N + + G+K L V TL + G+S + K +S + + G
Sbjct: 78 KNNSRIKLGIKSL-VSKGTLVQTKGTGASGSFKLNKKASSVETKPGASKVATKTKATGAS 136
Query: 122 KDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPK------AEGQASENKWSH 175
K + K K +K K KS +PK VKPK A+ +A + K +
Sbjct: 137 KKLKKATGASKKSVKTPKKAKKPAATRKSSKNPKKPKTVKPKKVAKSPAKAKAVKPKAAK 196
Query: 176 LLVQREKMKELKKGRNSK 193
V + K + KK K
Sbjct: 197 ARVTKPKTAKPKKAAPKK 214
>gi|222537714 taxilin beta [Homo sapiens]
Length = 684
Score = 35.0 bits (79), Expect = 0.31
Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 13/176 (7%)
Query: 221 IKEPLGSRRQKISFKIPIKSRDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVT 280
+KEP+ ++ QK+ KI +K L+ +N+ N +T +E+ ++L L +
Sbjct: 122 VKEPVSNKEQKLEKKI-LKGLGKEANLLMQNL-----NKLQTPEEKFDFLFKKYAEL-LD 174
Query: 281 RQKTEHLLSDFTYKRTVHEWKRKHHYDHQESNDSHSR---ENLTQSFEAPCCSVSSESIQ 337
+TE K+ V K K + S +R E+L + + ++ E++Q
Sbjct: 175 EHRTEQKKLKLLQKKQVQIQKEKDQLQGEHSRAILARSKLESLCRELQRHNKTLKEEALQ 234
Query: 338 DADQEMQIVEELHAARVGKSVDLPGELMSMEIDLEDDVHSSSANNTSDRKLLIVID 393
A +E + +E+ + D+ G++ E E ++ N KL +ID
Sbjct: 235 RAREEEEKRKEITSHFQSTLTDIQGQI---EQQSERNMKLCQENTELAEKLKSIID 287
>gi|33356172 nibrin [Homo sapiens]
Length = 754
Score = 35.0 bits (79), Expect = 0.31
Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 12/218 (5%)
Query: 135 IKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQREKMKELKKGR-NSK 193
+K T G L G+ ++ V +E++ + E+ KE+K + K
Sbjct: 333 LKTTTPGPSLSQGVSVDEKLMPSAPVNTTTYVADTESEQADTWDLSERPKEIKVSKMEQK 392
Query: 194 FRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRR----QKISFKIPI--KSRDTLQKL 247
FR S+ K S N+N ++ L R Q K+P KS+D +
Sbjct: 393 FRMLSQDAPTVKESCKTSS---NNNSMVSNTLAKMRIPNYQLSPTKLPSINKSKDRASQQ 449
Query: 248 VEENVFNIDSNNSKTKQEEREYLESSQVSLNVTRQKTEHLLSDFTYKRTVHEWKRK-HHY 306
+ N + TK+ ER+ S R +T L + T T WK K H
Sbjct: 450 QQTNSIR-NYFQPSTKKRERDEENQEMSSCKSARIETSCSLLEQTQPATPSLWKNKEQHL 508
Query: 307 DHQESNDSHSRENLTQSFEAPCCSVSSESIQDADQEMQ 344
E D++S NL + +S S A ++++
Sbjct: 509 SENEPVDTNSDNNLFTDTDLKSIVKNSASKSHAAEKLR 546
>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
Length = 237
Score = 35.0 bits (79), Expect = 0.31
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 35/196 (17%)
Query: 9 KKETSQRKDT----TTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVLY 64
KKE + ++ + SS ++ KKE+K +SSSS S SS D
Sbjct: 60 KKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSSSSSDSSSSSSDSEDE----- 114
Query: 65 YNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGTKKDI 124
++QG + R++ K S + E + + + + S +GT+K+
Sbjct: 115 ---DKKQGKR---------RKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKE- 161
Query: 125 HKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQREKMK 184
KDIK + K+ K LSS + S+ + E +A + K S +REK
Sbjct: 162 --------KDIKGLSKKRKMYSEDKPLSSESL-SESEYIEEVRAKKKKSSE---EREKAT 209
Query: 185 ELKKGRNSKFRDNSEK 200
E K + K + +S+K
Sbjct: 210 E-KTKKKKKHKKHSKK 224
>gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens]
Length = 247
Score = 35.0 bits (79), Expect = 0.31
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 35/196 (17%)
Query: 9 KKETSQRKDT----TTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVLY 64
KKE + ++ + SS ++ KKE+K +SSSS S SS D
Sbjct: 70 KKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSSSSSDSSSSSSDSEDE----- 124
Query: 65 YNIKRRQGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGTKKDI 124
++QG + R++ K S + E + + + + S +GT+K+
Sbjct: 125 ---DKKQGKR---------RKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKE- 171
Query: 125 HKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQREKMK 184
KDIK + K+ K LSS + S+ + E +A + K S +REK
Sbjct: 172 --------KDIKGLSKKRKMYSEDKPLSSESL-SESEYIEEVRAKKKKSSE---EREKAT 219
Query: 185 ELKKGRNSKFRDNSEK 200
E K + K + +S+K
Sbjct: 220 E-KTKKKKKHKKHSKK 234
>gi|154354990 ankyrin repeat domain 26 [Homo sapiens]
Length = 1710
Score = 35.0 bits (79), Expect = 0.31
Identities = 75/397 (18%), Positives = 144/397 (36%), Gaps = 44/397 (11%)
Query: 14 QRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVLYYNIKRRQGL 73
+RK T F K+ KE + + ++S EKR K ++ G
Sbjct: 584 KRKSGETDHQQFPRKENKEYASSGPALQMKEVKSTEKEKRTSKESVNSPVFGKASLLTG- 642
Query: 74 KRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGTKKDIHKCVDFKPK 133
+++D +I RP K SN+ + S D+ + + +
Sbjct: 643 --GLLQVDDDSSLSEIDEDEGRPTK----KTSNEKNKVKNQIQSMDDVDDLTQSSETASE 696
Query: 134 DIKLTNAGSK--------LDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQREKMKE 185
D +L ++ K L K S D E + E K +H + K+K+
Sbjct: 697 DCELPHSSYKNFMLLIEQLGMECKDSVSLLKIQDAALSCE-RLLELKKNHCELLTVKIKK 755
Query: 186 LKKGRNSKFRDNSE----KCVLE----KWKRNQFSQDYNSN-------------KIIKEP 224
++ N R+ SE K LE +W+R S ++ N + I+E
Sbjct: 756 MEDKVNVLQRELSETKEIKSQLEHQKVEWERELCSLRFSLNQEEEKRRNADTLYEKIREQ 815
Query: 225 LGSRRQKISFKIPIKSRDTLQ-KLVEENVFNIDSNNSKTKQE----EREYLESSQVSLNV 279
L + ++ ++ +K + L + +E + + SN ++ QE +R+ +
Sbjct: 816 LRRKEEQYRKEVEVKQQLELSLQTLEMELRTVKSNLNQVVQERNDAQRQLSREQNARMLQ 875
Query: 280 TRQKTEHLLSDFTYKRTVHEWKRKHHYDHQESND-SHSRENLTQSFEAPCCSVSSESIQD 338
T HL + + ++ + H+E D SH L + + + Q+
Sbjct: 876 DGILTNHLSKQKEIEMAQKKMNSENSHSHEEEKDLSHKNSMLQEEIAMLRLEIDTIKNQN 935
Query: 339 ADQEMQIVEELHAARVGKSVDLPGELMSMEIDLEDDV 375
++E + E+L + K+ DL + E L +
Sbjct: 936 QEKEKKCFEDLKIVK-EKNEDLQKTIKQNEETLTQTI 971
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.128 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,530,557
Number of Sequences: 37866
Number of extensions: 1370938
Number of successful extensions: 4577
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 4343
Number of HSP's gapped (non-prelim): 326
length of query: 900
length of database: 18,247,518
effective HSP length: 111
effective length of query: 789
effective length of database: 14,044,392
effective search space: 11081025288
effective search space used: 11081025288
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.