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Search of human proteins with 157151755
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo
sapiens]
(322 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo sa... 635 0.0
gi|5454024 ribonuclease P/MRP 30kDa subunit isoform b [Homo sapi... 518 e-147
gi|193794843 BEN domain containing 2 [Homo sapiens] 52 9e-07
gi|238908517 colony stimulating factor 2 receptor alpha chain is... 49 6e-06
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi... 48 1e-05
gi|59933284 RUN domain containing 2B [Homo sapiens] 48 1e-05
gi|205830426 solute carrier family 39 (zinc transporter), member... 47 2e-05
gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo... 45 9e-05
gi|239757977 PREDICTED: similar to CYorf16 protein [Homo sapiens] 42 6e-04
gi|239752473 PREDICTED: hypothetical protein XP_002348288 [Homo ... 42 6e-04
gi|239747029 PREDICTED: hypothetical protein XP_002343910 [Homo ... 42 6e-04
gi|121583542 mitogen-activated protein kinase kinase kinase 15 [... 41 0.001
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 39 0.005
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens] 38 0.011
gi|47578099 selenoprotein N, 1 isoform 1 precursor [Homo sapiens] 38 0.011
gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4 pr... 38 0.014
gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4 p... 38 0.014
gi|150378454 sarcoglycan, epsilon isoform 1 [Homo sapiens] 37 0.018
gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo s... 37 0.018
gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo s... 37 0.018
gi|223029500 EF-hand calcium binding domain 5 isoform b [Homo sa... 36 0.040
gi|168693643 decay accelerating factor for complement isoform 2 ... 36 0.053
gi|239757956 PREDICTED: similar to CYorf16 protein [Homo sapiens] 36 0.053
gi|239752467 PREDICTED: hypothetical protein [Homo sapiens] 36 0.053
gi|239747010 PREDICTED: hypothetical protein XP_002344242 [Homo ... 36 0.053
gi|149588643 zinc finger protein 283 [Homo sapiens] 36 0.053
gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ... 35 0.069
gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ... 35 0.069
gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ... 35 0.069
gi|154240722 hypothetical protein LOC399949 isoform 1 [Homo sapi... 35 0.069
>gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo
sapiens]
Length = 322
Score = 635 bits (1639), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MAVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTT 60
MAVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTT
Sbjct: 1 MAVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTT 60
Query: 61 LPIVQGKSRPIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHL 120
LPIVQGKSRPIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHL
Sbjct: 61 LPIVQGKSRPIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHL 120
Query: 121 DVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQIC 180
DVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQIC
Sbjct: 121 DVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQIC 180
Query: 181 KGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFG 240
KGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFG
Sbjct: 181 KGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFG 240
Query: 241 IISTVKKPRPSEGDEDCLPASKKAKWSHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLPR 300
IISTVKKPRPSEGDEDCLPASKKAKWSHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLPR
Sbjct: 241 IISTVKKPRPSEGDEDCLPASKKAKWSHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLPR 300
Query: 301 TRIQQRQLLISHQRDHTPKNRL 322
TRIQQRQLLISHQRDHTPKNRL
Sbjct: 301 TRIQQRQLLISHQRDHTPKNRL 322
>gi|5454024 ribonuclease P/MRP 30kDa subunit isoform b [Homo
sapiens]
Length = 268
Score = 518 bits (1333), Expect = e-147
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MAVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTT 60
MAVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTT
Sbjct: 1 MAVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTT 60
Query: 61 LPIVQGKSRPIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHL 120
LPIVQGKSRPIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHL
Sbjct: 61 LPIVQGKSRPIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHL 120
Query: 121 DVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQIC 180
DVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQIC
Sbjct: 121 DVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQIC 180
Query: 181 KGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFG 240
KGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFG
Sbjct: 181 KGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFG 240
Query: 241 IISTVKKPRPSEGDEDCLPASKKAK 265
IISTVKKPRPSEGDEDCLPASKKAK
Sbjct: 241 IISTVKKPRPSEGDEDCLPASKKAK 265
>gi|193794843 BEN domain containing 2 [Homo sapiens]
Length = 799
Score = 51.6 bits (122), Expect = 9e-07
Identities = 25/33 (75%), Positives = 26/33 (78%)
Query: 267 SHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLP 299
S SVTQAGVQWH+ SLQP PLGLK HLSLP
Sbjct: 81 SGSVTQAGVQWHDHSSLQPQPLGLKQFFHLSLP 113
>gi|238908517 colony stimulating factor 2 receptor alpha chain
isoform f precursor [Homo sapiens]
Length = 434
Score = 48.9 bits (115), Expect = 6e-06
Identities = 25/33 (75%), Positives = 25/33 (75%)
Query: 267 SHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLP 299
SHSVTQAGVQWHNLGSLQP LK S L LP
Sbjct: 317 SHSVTQAGVQWHNLGSLQPPSPRLKRFSCLRLP 349
>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
sapiens]
Length = 440
Score = 48.1 bits (113), Expect = 1e-05
Identities = 24/33 (72%), Positives = 24/33 (72%)
Query: 267 SHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLP 299
S SV QAGVQW NLGSLQPLP G K S L LP
Sbjct: 358 SRSVAQAGVQWRNLGSLQPLPPGFKQFSCLILP 390
>gi|59933284 RUN domain containing 2B [Homo sapiens]
Length = 249
Score = 48.1 bits (113), Expect = 1e-05
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 261 SKKAKWSHSVTQAGVQWHNLGSLQPLPLGLK 291
S + +HSVTQAGVQWH+LGSLQPLP G +
Sbjct: 219 SPEKNGAHSVTQAGVQWHDLGSLQPLPPGFR 249
>gi|205830426 solute carrier family 39 (zinc transporter), member 14
isoform c [Homo sapiens]
Length = 481
Score = 47.4 bits (111), Expect = 2e-05
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 269 SVTQAGVQWHNLGSLQPLPLGLKPSSHLSLP 299
SV QAGVQW +L SLQPLPLGLK S LSLP
Sbjct: 449 SVAQAGVQWCHLSSLQPLPLGLKRLSCLSLP 479
>gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo
sapiens]
Length = 165
Score = 45.1 bits (105), Expect = 9e-05
Identities = 23/35 (65%), Positives = 24/35 (68%)
Query: 267 SHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLPRT 301
S V QAGVQW +LGSLQP P G K LSLPRT
Sbjct: 29 SRCVPQAGVQWRDLGSLQPPPPGFKQVFCLSLPRT 63
>gi|239757977 PREDICTED: similar to CYorf16 protein [Homo sapiens]
Length = 140
Score = 42.4 bits (98), Expect = 6e-04
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 254 DEDCLPASKKAKW-SHSVTQAGVQWHNLGSLQPLPLGLKPS 293
+ DCL ++ SH VTQAGV+WH+LGSLQ LP K S
Sbjct: 95 EHDCLGFGGISEMESHYVTQAGVKWHDLGSLQTLPPSFKDS 135
>gi|239752473 PREDICTED: hypothetical protein XP_002348288 [Homo
sapiens]
Length = 140
Score = 42.4 bits (98), Expect = 6e-04
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 254 DEDCLPASKKAKW-SHSVTQAGVQWHNLGSLQPLPLGLKPS 293
+ DCL ++ SH VTQAGV+WH+LGSLQ LP K S
Sbjct: 95 EHDCLGFGGISEMESHYVTQAGVKWHDLGSLQTLPPSFKDS 135
>gi|239747029 PREDICTED: hypothetical protein XP_002343910 [Homo
sapiens]
Length = 228
Score = 42.4 bits (98), Expect = 6e-04
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 254 DEDCLPASKKAKW-SHSVTQAGVQWHNLGSLQPLPLGLKPS 293
+ DCL ++ SH VTQAGV+WH+LGSLQ LP K S
Sbjct: 183 EHDCLGFGGISEMESHYVTQAGVKWHDLGSLQTLPPSFKDS 223
>gi|121583542 mitogen-activated protein kinase kinase kinase 15
[Homo sapiens]
Length = 788
Score = 41.2 bits (95), Expect = 0.001
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 268 HSVTQAGVQWHNLGSLQPLPLGLKPSSHLSL 298
H +AGVQWH+LGSLQPLP K S LSL
Sbjct: 21 HKGNKAGVQWHDLGSLQPLPPRFKRFSCLSL 51
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
Length = 1079
Score = 39.3 bits (90), Expect = 0.005
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 272 QAGVQWHNLGSLQPLPLGLKPSSHLSLPRT 301
+AG+QW +L SLQP P G K SHLSLP +
Sbjct: 995 RAGMQWCDLSSLQPPPPGFKRFSHLSLPNS 1024
>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
Length = 825
Score = 38.1 bits (87), Expect = 0.011
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 264 AKW--SHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLPRT 301
AKW S SV Q GVQW ++ SLQPL + S LSLP T
Sbjct: 773 AKWDTSLSVAQPGVQWCDISSLQPLTSRFQQFSCLSLPST 812
>gi|47578099 selenoprotein N, 1 isoform 1 precursor [Homo sapiens]
Length = 590
Score = 38.1 bits (87), Expect = 0.011
Identities = 38/107 (35%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 205 NLGLLFGLSESDAKAAVSTNCRAALLHGETRKT-AFGIIST----VKKPRPSEGD----- 254
+L LL L + A AAV R A R+ A + T + ++GD
Sbjct: 30 SLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGLFLFSSLDTDGDMYISP 89
Query: 255 EDCLPASKKAKWSHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLPRT 301
E+ P ++K S SVTQ GVQW + SLQP L SS LSL R+
Sbjct: 90 EEFKPIAEKLTGSCSVTQTGVQWCSHSSLQPQLPWLNUSSCLSLLRS 136
>gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4
precursor [Homo sapiens]
Length = 171
Score = 37.7 bits (86), Expect = 0.014
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 263 KAKWSHSVTQAGVQWHNLGSLQPLPLGLK 291
K + SHSVTQ +QWH+ GSLQP P LK
Sbjct: 143 KVEVSHSVTQDWLQWHDHGSLQPPPPRLK 171
>gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4
precursor [Homo sapiens]
Length = 171
Score = 37.7 bits (86), Expect = 0.014
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 263 KAKWSHSVTQAGVQWHNLGSLQPLPLGLK 291
K + SHSVTQ +QWH+ GSLQP P LK
Sbjct: 143 KVEVSHSVTQDWLQWHDHGSLQPPPPRLK 171
>gi|150378454 sarcoglycan, epsilon isoform 1 [Homo sapiens]
Length = 462
Score = 37.4 bits (85), Expect = 0.018
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 254 DEDCLPASKKAKWSHS-VTQAGVQWHNLGSLQPLP 287
D +P + +WS + V QAGVQW +LGSLQP P
Sbjct: 407 DSTNMPLMQTQQWSFAPVAQAGVQWSDLGSLQPPP 441
>gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo
sapiens]
Length = 714
Score = 37.4 bits (85), Expect = 0.018
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 267 SHSVTQAGVQWHNLGSLQPLPLGL 290
S S TQAGVQW N GSLQP P GL
Sbjct: 467 SRSYTQAGVQWCNHGSLQPRPPGL 490
>gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo
sapiens]
Length = 741
Score = 37.4 bits (85), Expect = 0.018
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 267 SHSVTQAGVQWHNLGSLQPLPLGL 290
S S TQAGVQW N GSLQP P GL
Sbjct: 467 SRSYTQAGVQWCNHGSLQPRPPGL 490
>gi|223029500 EF-hand calcium binding domain 5 isoform b [Homo
sapiens]
Length = 856
Score = 36.2 bits (82), Expect = 0.040
Identities = 17/24 (70%), Positives = 17/24 (70%)
Query: 272 QAGVQWHNLGSLQPLPLGLKPSSH 295
QAGVQW N SLQP GLK SSH
Sbjct: 810 QAGVQWRNCSSLQPPTPGLKRSSH 833
>gi|168693643 decay accelerating factor for complement isoform 2
precursor [Homo sapiens]
Length = 440
Score = 35.8 bits (81), Expect = 0.053
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 250 PSEGDEDCLPASKKAKWSHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLP 299
P++G ++ S VTQAG++W + SLQ G K S H SLP
Sbjct: 345 PNKGSGTTSGTTRLLSGSRPVTQAGMRWCDRSSLQSRTPGFKRSFHFSLP 394
>gi|239757956 PREDICTED: similar to CYorf16 protein [Homo sapiens]
Length = 223
Score = 35.8 bits (81), Expect = 0.053
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 254 DEDCLPASKKAKW-SHSVTQAGVQWHNLGSLQPLP 287
+ DCL + A+ SH V QAGV+ +LGSLQPLP
Sbjct: 137 EHDCLGFGRIAEMESHCVIQAGVKGKSLGSLQPLP 171
>gi|239752467 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 35.8 bits (81), Expect = 0.053
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 254 DEDCLPASKKAKW-SHSVTQAGVQWHNLGSLQPLP 287
+ DCL + A+ SH V QAGV+ +LGSLQPLP
Sbjct: 271 EHDCLGFGRIAEMESHCVIQAGVKGKSLGSLQPLP 305
>gi|239747010 PREDICTED: hypothetical protein XP_002344242 [Homo
sapiens]
Length = 357
Score = 35.8 bits (81), Expect = 0.053
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 254 DEDCLPASKKAKW-SHSVTQAGVQWHNLGSLQPLP 287
+ DCL + A+ SH V QAGV+ +LGSLQPLP
Sbjct: 271 EHDCLGFGRIAEMESHCVIQAGVKGKSLGSLQPLP 305
>gi|149588643 zinc finger protein 283 [Homo sapiens]
Length = 679
Score = 35.8 bits (81), Expect = 0.053
Identities = 20/32 (62%), Positives = 21/32 (65%)
Query: 267 SHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSL 298
S SV QAGVQW +LGSLQ P G S LSL
Sbjct: 3 SRSVAQAGVQWCDLGSLQAPPPGFTLFSCLSL 34
>gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 35.4 bits (80), Expect = 0.069
Identities = 23/34 (67%), Positives = 24/34 (70%), Gaps = 4/34 (11%)
Query: 267 SHSVTQAGVQW-HNLGSLQPLPLGLKPSSHLSLP 299
S SVTQAGVQW +LGSLQP P G S LSLP
Sbjct: 129 SCSVTQAGVQWCDDLGSLQPPPPGF---SCLSLP 159
>gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 35.4 bits (80), Expect = 0.069
Identities = 23/34 (67%), Positives = 24/34 (70%), Gaps = 4/34 (11%)
Query: 267 SHSVTQAGVQW-HNLGSLQPLPLGLKPSSHLSLP 299
S SVTQAGVQW +LGSLQP P G S LSLP
Sbjct: 129 SCSVTQAGVQWCDDLGSLQPPPPGF---SCLSLP 159
>gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 35.4 bits (80), Expect = 0.069
Identities = 23/34 (67%), Positives = 24/34 (70%), Gaps = 4/34 (11%)
Query: 267 SHSVTQAGVQW-HNLGSLQPLPLGLKPSSHLSLP 299
S SVTQAGVQW +LGSLQP P G S LSLP
Sbjct: 129 SCSVTQAGVQWCDDLGSLQPPPPGF---SCLSLP 159
>gi|154240722 hypothetical protein LOC399949 isoform 1 [Homo
sapiens]
Length = 196
Score = 35.4 bits (80), Expect = 0.069
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 267 SHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLPRTRIQQRQLLISHQ 313
SHSVTQ VQWH+ GSLQP ++ + + + +QR+ IS +
Sbjct: 116 SHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKE 162
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,787,668
Number of Sequences: 37866
Number of extensions: 512132
Number of successful extensions: 1243
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 55
length of query: 322
length of database: 18,247,518
effective HSP length: 102
effective length of query: 220
effective length of database: 14,385,186
effective search space: 3164740920
effective search space used: 3164740920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.