Search of human proteins with 11056026

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11056026 protocadherin gamma subfamily A, 4 isoform 1
precursor [Homo sapiens]
         (931 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs...  1840   0.0  
gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precurs...  1586   0.0  
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs...  1420   0.0  
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs...  1414   0.0  
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs...  1394   0.0  
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs...  1382   0.0  
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs...  1380   0.0  
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs...  1372   0.0  
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur...  1370   0.0  
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs...  1367   0.0  
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur...  1362   0.0  
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs...  1357   0.0  
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs...  1349   0.0  
gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precurs...  1170   0.0  
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs...  1162   0.0  
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs...  1140   0.0  
gi|7662056 protocadherin gamma subfamily A, 8 isoform 2 precurso...  1132   0.0  
gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precurs...  1128   0.0  
gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precurs...  1122   0.0  
gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precur...  1121   0.0  
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur...  1116   0.0  
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur...  1114   0.0  
gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precurs...  1102   0.0  
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs...  1100   0.0  
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs...   908   0.0  
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs...   907   0.0  
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs...   902   0.0  
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs...   902   0.0  
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs...   900   0.0  
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs...   900   0.0  

>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score = 1840 bits (4766), Expect = 0.0
 Identities = 931/931 (100%), Positives = 931/931 (100%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA
Sbjct: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE
Sbjct: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL
Sbjct: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
           DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP
Sbjct: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD
Sbjct: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS
Sbjct: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
           SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI
Sbjct: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD
Sbjct: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
           SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP
Sbjct: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL
Sbjct: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH
Sbjct: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
           KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI
Sbjct: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780

Query: 781 SRESCEKSEPLLITQDLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 840
           SRESCEKSEPLLITQDLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
Sbjct: 781 SRESCEKSEPLLITQDLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 840

Query: 841 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 900
           QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
Sbjct: 841 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 900

Query: 901 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
           ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931


>gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precursor
           [Homo sapiens]
          Length = 820

 Score = 1586 bits (4106), Expect = 0.0
 Identities = 807/807 (100%), Positives = 807/807 (100%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA
Sbjct: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE
Sbjct: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL
Sbjct: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
           DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP
Sbjct: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD
Sbjct: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS
Sbjct: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
           SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI
Sbjct: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD
Sbjct: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
           SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP
Sbjct: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL
Sbjct: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH
Sbjct: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
           KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI
Sbjct: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780

Query: 781 SRESCEKSEPLLITQDLLETKGDPNLQ 807
           SRESCEKSEPLLITQDLLETKGDPNLQ
Sbjct: 781 SRESCEKSEPLLITQDLLETKGDPNLQ 807


>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1420 bits (3676), Expect = 0.0
 Identities = 716/920 (77%), Positives = 795/920 (86%), Gaps = 1/920 (0%)

Query: 13  LLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRT 72
           L  +C LLG L E  + QI YSV EE ++GS VGNIA DLGL PRELAERGVRIVSRGRT
Sbjct: 13  LALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRT 72

Query: 73  QLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPS 132
           QLF+LNP+SG+LVTA RIDREELC + P C+  + IL+ED +KI  VE+EI D+NDN P+
Sbjct: 73  QLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPN 132

Query: 133 FGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYP 192
           F TE+ EIK+ E   PG RFP+  AFDPDVG+NSLQ Y+L+ N YFSL V S ++G KYP
Sbjct: 133 FPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYP 192

Query: 193 ELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVR 252
           ELVLERALDRE++ +H LVL A DGGDPV SG   I +I++D NDN P+FTQPEY VSV 
Sbjct: 193 ELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVW 252

Query: 253 ENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDS 312
           ENVPVGTRLLTV ATDPDEG N  V+Y   K+  KI+++F LNS+SG+++IL  LDYED+
Sbjct: 253 ENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDA 312

Query: 313 GFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVH 372
            FY+I +EA DGPGL +R+K+LVTVLD NDNAPE+T+TSLTSSV E  + G  IAL +VH
Sbjct: 313 MFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVH 372

Query: 373 DSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPL 432
           D DSG NG V   +  NLPF LEK+   YYRL+T  +LDRE++SEYNI++ A+D G+PPL
Sbjct: 373 DRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPL 432

Query: 433 STETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLA 492
           STETHI+L V+DINDNPPTFPH SYSAYIPENNPRGASI S+TAQDPDS +NARITY+L 
Sbjct: 433 STETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALT 492

Query: 493 EDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFV 552
           EDT QGAPLSS+VSINSNTG+LYAL SFDYEQFRDL+LL+TASDSG+PPLSSNVSL+LFV
Sbjct: 493 EDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFV 552

Query: 553 LDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSS 612
           LDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQNAWLSY LLK+S
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612

Query: 613 EPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVL 672
           EPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTVAVAD IPD+L
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDIL 672

Query: 673 ADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRL 732
           ADLGSL+PSA P+DS LTLYLVVAVAAVSCVFLAFV VLLAL+LRRWHKSRLL A G  L
Sbjct: 673 ADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGL 732

Query: 733 AGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEPLL 792
           A  P SHFVG DGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLIS+ESCEKSEPLL
Sbjct: 733 ASTPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLL 792

Query: 793 ITQDLLETKGDPN-LQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI 851
           ITQDLLE KGD N LQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI
Sbjct: 793 ITQDLLEMKGDSNLLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI 852

Query: 852 LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD 911
           LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD
Sbjct: 853 LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD 912

Query: 912 GKAPAGGNGNKKKSGKKEKK 931
           GKAPAGGNGNKKKSGKKEKK
Sbjct: 913 GKAPAGGNGNKKKSGKKEKK 932


>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1414 bits (3661), Expect = 0.0
 Identities = 717/932 (76%), Positives = 797/932 (85%), Gaps = 1/932 (0%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MA P   P  +  + +  LLG L    A QI YS+ EE E+GS VGNI KDLGL P+ELA
Sbjct: 1   MAPPQRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           E GVRIVSRGR QLF+LNPR+G+LVTAGRIDREELC +SP C+ +  IL+ED + +  VE
Sbjct: 61  EHGVRIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVE 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           VEI+D+NDN P F  E+ E+K+ EN  P +RFPL E +DPDVG+NSLQG++L+ N +FS+
Sbjct: 121 VEIVDINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSV 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
           DVQS A G KYPELVLE  LDRE EAV+ LVLTA DGGDPVRS  A+IL+ ++D NDN P
Sbjct: 181 DVQSEAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           +FTQP Y VSV EN+PVGT +L V ATD DEG +G+VTYSF K+ +KISQ+F LN L+G+
Sbjct: 241 MFTQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGE 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           I+    LDYEDS FY++ VEA DGPGLR R+KVL+T+LD NDN PEV VTS + ++ ES+
Sbjct: 301 ISTSANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESA 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
            PGTVIALF V D DSG NGLVTCSIP +LPF LEK+ GNYYRL+T+  LDREEV  YNI
Sbjct: 361 PPGTVIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           TVTATD+GTPPLSTET ISL V D NDNPPTFPH+SYS Y+ ENNPRGASI S+ A DPD
Sbjct: 421 TVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
              NA+++YSLAEDT QGAPLSSYVSINS+TGILYAL SFDYEQ RDLQL +TASDSGDP
Sbjct: 481 VDQNAQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSNVSLSLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVAVAD IPD+LADLGSL+PSA P+DS LTLYLVVAVAAVSCVFLAFV VLLAL+L+RWH
Sbjct: 661 TVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
           KSRLL A G  LA +P SHFVGV+GVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLI
Sbjct: 721 KSRLLQASGGGLASMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLI 780

Query: 781 SRESCEKSEPLLITQDLLETKGDP-NLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 839
           ++ES EKSEPLLITQDLLETKG+P  LQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 781 NQESYEKSEPLLITQDLLETKGEPRQLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 840

Query: 840 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 899
           NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 841 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 900

Query: 900 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
           NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932


>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score = 1394 bits (3609), Expect = 0.0
 Identities = 714/931 (76%), Positives = 786/931 (84%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MA+PP       LL   +LLG L E  + QI YS+ EE ++GS VGNIAKDLGL P+ELA
Sbjct: 1   MASPPRGWGCGELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           ERGVRIVSRGRTQLFALNPRSG+LVTAGRIDREELC +SP CV N  IL+E+ +KI  VE
Sbjct: 61  ERGVRIVSRGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVE 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           VEIID+NDN P F  E+ ++KV EN   G R  LP A D DVGVNSL+ YQL+SN +FSL
Sbjct: 121 VEIIDINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSL 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
           DV SG DG KYPELVLE+ LDRE+E VH L+LTA DGGDPV SGT  I + ++D NDNAP
Sbjct: 181 DVVSGTDGQKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           +FT  EY VSV EN+PVGTRLL + ATDPDEG NG +TYSFR   +KIS+ FQL+S  G+
Sbjct: 241 LFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGE 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           I+ L  LDYE+S FY ++V A DG  L A +KV+VTV D NDNAPEV +TSLTSS+ E  
Sbjct: 301 ISTLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDC 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
            PGTVIALF+VHD DSG NG + CSIP NLPF LEK+  NYY LLT R LDREE S+YNI
Sbjct: 361 LPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           T+T  D GTPPLSTE+HI L+V D+NDNPP FP ASYS  + ENNPRG SI S+TA DPD
Sbjct: 421 TLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
           SGDNAR+TYSLAEDTFQGAPLSSYVSINS+TG+LYAL SFDYEQ RDLQL +TASDSG+P
Sbjct: 481 SGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSNVSLSLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVD+DSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSY LLK+SEPGLFAVGLHTGEVRTARALLDRDALKQ LVV V+DHGQPPLSAT T+
Sbjct: 601 NAWLSYRLLKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTV 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVAVAD IPD+LADLGS+K   DP+D  LTLYLVVAVAAVSCVFLAFV VLL L+LRRWH
Sbjct: 661 TVAVADRIPDILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
           KSRLL AEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTL+
Sbjct: 721 KSRLLQAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLL 780

Query: 781 SRESCEKSEPLLITQDLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 840
           S ESCEKSEPLL++  +   K +  +QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
Sbjct: 781 SEESCEKSEPLLMSDKVDANKEERRVQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 840

Query: 841 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 900
           QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
Sbjct: 841 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 900

Query: 901 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
           ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931


>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1382 bits (3577), Expect = 0.0
 Identities = 702/932 (75%), Positives = 782/932 (83%), Gaps = 1/932 (0%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MAAP +RP    L+ +C LLG L EI   QI YSV EE ++GS VGNI+KDLGL PR+LA
Sbjct: 1   MAAPQSRPRRGELILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           + GVRIVSRGRTQLFALNPRSG+L+TAGRIDREELC +SP C+ N+  L+ED  K+  VE
Sbjct: 61  KHGVRIVSRGRTQLFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVE 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           +EIID+NDN P F  E  E+K+ E   PGAR+PLPEA DPDVGVNSLQ YQL+ N +FSL
Sbjct: 121 IEIIDINDNNPKFQVEDLEVKINEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSL 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
           DVQ+G +G   PELVLERALDREEEA HHLVLTA DGG P RS T RI + ++DTNDNAP
Sbjct: 181 DVQTGDNGAINPELVLERALDREEEAAHHLVLTASDGGKPPRSSTVRIHVTVLDTNDNAP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           VF  P Y V V EN+P GTRLLTV A+DPDEG NG V Y FRK+ +K + LFQLN  +G+
Sbjct: 241 VFPHPIYRVKVLENMPPGTRLLTVTASDPDEGINGKVAYKFRKINEKQTPLFQLNENTGE 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           I+I   LDYE+  FY+++++A D   L  R+K+L++V D NDN PEV +TSL S V E+S
Sbjct: 301 ISIAKSLDYEECSFYEMEIQAEDVGALLGRTKLLISVEDVNDNRPEVIITSLFSPVLENS 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
            PGTVIA  +VHD DSG NG V C   DNLPF LEK+ GNYYRL+T + LDRE VS YNI
Sbjct: 361 LPGTVIAFLSVHDQDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           TV A+D GTPPLSTET I+L V DINDNPPTFPHASYSAYI ENN RGASI S+TA DPD
Sbjct: 421 TVMASDLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
           S +NA++TYS+ EDT QGAPLSSY+SINS+TG+LYAL SFDYEQ RDLQLL+TASDSGDP
Sbjct: 481 SQENAQVTYSVTEDTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSN+SLSLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVAVADSIP+VL +LGSLKPS DP+DS LTLYLVVAVAA+SCVFLAFV VLL L+LRRWH
Sbjct: 661 TVAVADSIPEVLTELGSLKPSVDPNDSSLTLYLVVAVAAISCVFLAFVAVLLGLRLRRWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
           KSRLL   G RL GVPASHFVGV+ V+AFLQTYS EVSLTADSRKSHLIF QP+YAD LI
Sbjct: 721 KSRLLQDSGGRLVGVPASHFVGVEEVQAFLQTYSQEVSLTADSRKSHLIFPQPNYADMLI 780

Query: 781 SRESCEKSEPLLITQDLLETKGDPNL-QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 839
           S+E CEK++ LL + D  E K + +  QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 781 SQEGCEKNDSLLTSVDFHEYKNEADHGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 840

Query: 840 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 899
           NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 841 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 900

Query: 900 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
           NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932


>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1380 bits (3571), Expect = 0.0
 Identities = 701/932 (75%), Positives = 788/932 (84%), Gaps = 1/932 (0%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MAA P   D+     + +LLG   E  A +ILYSV EE ++GS VG+IAKDLGL PRELA
Sbjct: 1   MAAQPRGGDYRGFFLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           ERGVRI+SRGRTQLFALN RSG+LVTAGRIDREE+C +S  C+ N  IL+ED + +  ++
Sbjct: 61  ERGVRIISRGRTQLFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPID 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           VEIID+NDN P F TE+  +K+ EN  PG RFPL EA DPDVG NSLQ YQL+ N +FSL
Sbjct: 121 VEIIDINDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSL 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
            VQSG D  KYPELVLER LDREEE VHHLVLTA DGGDP RS TA I + +VD ND+ P
Sbjct: 181 AVQSGDDETKYPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           VF+ P+Y V+V ENVPVGTRLLTV A D DEG NG+VTYSFRK+  K+ ++F LNSL+G+
Sbjct: 241 VFSLPQYQVTVPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGE 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           I+ L GLDYE++ FY+++V+A DGPG   ++KVL+TVLD NDNAPEVT+TSL+SS+ E +
Sbjct: 301 ISTLEGLDYEETAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDT 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
             GTVIALF + D DSG NG VTC+IP+NLPF LEK+  NYYRL+T + LDRE +S YNI
Sbjct: 361 PLGTVIALFYLQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           T+ ATD GTPPLS ETHI +QV D NDNPPTFPH+SYS YI ENNPRGASI  +TAQD D
Sbjct: 421 TLKATDGGTPPLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
           S DNA+ITYSLAEDT QGAP+SSYVSINS+TG+LYAL SFDYEQ R+LQL +TA DSGDP
Sbjct: 481 SEDNAQITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSN+SLSLFVLDQNDN PEILYP  PTDGSTG+ELAPRSA+ GYLVTKVVAVD+DSGQ
Sbjct: 541 PLSSNMSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSY LLK+SEPGLFAVGL+TGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVAVADSIP+VLADLGSL+PS  P +  LTLYLVVAVA VSCVFLAFV VLLAL+LRRWH
Sbjct: 661 TVAVADSIPEVLADLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
           KSRLL A    LA VP SHFVG+DGV+AFLQTYSHEVSLTADSRKSHLIF QP+Y D LI
Sbjct: 721 KSRLLQASEGGLANVPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLI 780

Query: 781 SRESCEKSEPLLITQDLLETKGD-PNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 839
           S+ESCEK++ LL + D  E K + P++QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 781 SQESCEKNDSLLTSVDFQECKENLPSIQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 840

Query: 840 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 899
           NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 841 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 900

Query: 900 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
           NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932


>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1372 bits (3550), Expect = 0.0
 Identities = 699/932 (75%), Positives = 772/932 (82%), Gaps = 1/932 (0%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MAA    P   +L+ +C LL  L E RA QI YSV EE + GS VGNIAKDLGL P  LA
Sbjct: 1   MAALQKLPHCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           E+GVRIVSRGR+QLFALNPRSG+LVTA RIDREELC +S  C+ N  ILLED + I  VE
Sbjct: 61  EQGVRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVE 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           VEI D+NDN P FG E+ E+K++E   PG R PL  A D DVG N+LQ Y LN N +FSL
Sbjct: 121 VEITDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSL 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
           DV+ GADG KYPELVLER+LDREEEAVHHLVL A DGGDPV SGT+RI + ++D NDNAP
Sbjct: 181 DVRRGADGNKYPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           VFTQPEY +S+ EN  VGTR+LTV ATD DEG    V Y   K   + S++F+L S SG+
Sbjct: 241 VFTQPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGE 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           +TI+  LDYED+ F++ID+EA DGPGL  R+KV+VTVLD NDNAPE  +TS TSSV E S
Sbjct: 301 LTIIKDLDYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDS 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
            PGT+I LFNVHD DSG N   TCS+P++LPF LEK+  NYYRL+T R LDRE+ S YNI
Sbjct: 361 LPGTIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           T+TA D G P LST+ HI LQV DINDN P F   SYS YIPENNPRGAS+ S+TA DPD
Sbjct: 421 TLTAKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
           S DNA +TYS AEDT QGAPLSSY+SINS+TG+LYAL SFDYEQ RDLQ+ + A DSG+P
Sbjct: 481 SNDNAHVTYSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSNVSLSLFVLDQNDN PEILYP FPTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV +QDHGQPPLSATVTL
Sbjct: 601 NAWLSYHLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTL 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVAVAD IPD+LADLGSL+PSA P+DS LTLYLVVAVAAVSCVFLAFV VLLA +LRRWH
Sbjct: 661 TVAVADRIPDILADLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
           KSRLL A G  L G+ +SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLI
Sbjct: 721 KSRLLQASGGSLTGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLI 780

Query: 781 SRESCEKSEPLLITQDLLETKGDPNL-QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 839
           S+ESCEK + L   Q LLE + +    QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 781 SQESCEKKDFLSAPQSLLEEEREETFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 840

Query: 840 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 899
           NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 841 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 900

Query: 900 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
           NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932


>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
           [Homo sapiens]
          Length = 936

 Score = 1370 bits (3546), Expect = 0.0
 Identities = 697/924 (75%), Positives = 773/924 (83%), Gaps = 1/924 (0%)

Query: 9   DHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVS 68
           D + L+ +CL  G+  E  A QI YS+ EE E+GS VGNI+KDLGLAPRELAERGVRIVS
Sbjct: 13  DCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVS 72

Query: 69  RGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVND 128
           RGRTQLF+LNPRSG+L+TAGRIDREELC +S  CV +  IL+ED VK+  +E+E+ D+ND
Sbjct: 73  RGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDIND 132

Query: 129 NPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADG 188
           N P F  E  ++K+ EN   G RFPLPEA DPDVGVNSLQ YQL+ N +FSL VQS A+G
Sbjct: 133 NAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANG 192

Query: 189 IKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYH 248
           +KYPELVLE +LDREEEA+HHLVLTA DGGDP+RSGT  + + + D NDNAPVFT PEY 
Sbjct: 193 VKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYR 252

Query: 249 VSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLD 308
           VSV EN+PVGT+LLTV ATD DEGANG+VTYSFRK+ D     FQLN  +G+I I   LD
Sbjct: 253 VSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISENLD 312

Query: 309 YEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIAL 368
           YE++GFY+I+++A DG    A +KVL+TV D NDN+PE+T+TSL S V E S  GTV+AL
Sbjct: 313 YEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVAL 372

Query: 369 FNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQG 428
            NVHD DS  NG VTCSI   LPF LEK+  +YYRL+ HR LDRE+VS YNITVTATD G
Sbjct: 373 LNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGG 432

Query: 429 TPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARIT 488
           +PPLSTE H  LQV DINDNPPTF   SY  YIPENN RGASI S+TA DPDS +NA+I 
Sbjct: 433 SPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQII 492

Query: 489 YSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSL 548
           YSLAEDT QG PLSSY+SINS+TG+LYAL SFDYEQF +LQ+ +TASDSGDPPLSSNVSL
Sbjct: 493 YSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSL 552

Query: 549 SLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSL 608
           SLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQNAWLSY L
Sbjct: 553 SLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRL 612

Query: 609 LKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSI 668
           LK+SEPGLFAVG HTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTVAVADSI
Sbjct: 613 LKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSI 672

Query: 669 PDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAE 728
           P VLADLGS +  A+ + S LTLYLVVAVAAVSCVFLAFV VLLA +LRRWHKSRLL A 
Sbjct: 673 PQVLADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQAS 732

Query: 729 GSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKS 788
           G  L GV  SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLIS+ESCEK+
Sbjct: 733 GGGLTGVSGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKN 792

Query: 789 EPL-LITQDLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML 847
           +PL L+       +  P + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML
Sbjct: 793 DPLSLLDDSKFPIEDTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML 852

Query: 848 QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA 907
           QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA
Sbjct: 853 QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA 912

Query: 908 GKRDGKAPAGGNGNKKKSGKKEKK 931
           GKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 913 GKRDGKAPAGGNGNKKKSGKKEKK 936


>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1367 bits (3537), Expect = 0.0
 Identities = 700/930 (75%), Positives = 784/930 (84%), Gaps = 3/930 (0%)

Query: 5   PAR--PDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAER 62
           PAR   D+  L+ + +LLG L E    QI YSV EE E+GS VG+I++DLGL PRELAER
Sbjct: 3   PARLHRDYKGLVLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAER 62

Query: 63  GVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVE 122
           GVRI+ RGRTQLFALNPRSG+LVTAGRIDREELC  +  C  NL+IL+ED VKI  VEVE
Sbjct: 63  GVRIIPRGRTQLFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVE 122

Query: 123 IIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDV 182
           + D+NDN P F   + EIK++EN     RFPLP A+DPD+G NSLQ Y+L+ N +FSL V
Sbjct: 123 VRDINDNAPYFRESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIV 182

Query: 183 QSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVF 242
           Q+GADG KYPELVL+RALDREE+A HHLVLTA DGGDPVR+GTARI ++++D NDNAP F
Sbjct: 183 QNGADGSKYPELVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAF 242

Query: 243 TQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDIT 302
            QPEY  SV EN+ +GT+LL V ATDPDEG N +V YSFR V DK +Q+F+L+  SG I+
Sbjct: 243 AQPEYRASVPENLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTIS 302

Query: 303 ILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSP 362
            +G LD+E+SGFY ++V+A D  G  AR+KVL+TVLD NDNAPEV +TSL SSV E+S  
Sbjct: 303 TIGELDHEESGFYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPR 362

Query: 363 GTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITV 422
           GT+IAL NV+D DS  NG V C I  NLPF LEK+YGNYY L+T   LDRE+V  YNITV
Sbjct: 363 GTLIALLNVNDQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITV 422

Query: 423 TATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSG 482
           TATD+GTPPLSTETHISL V D NDNPP FP ASYSAYIPENNPRG S++S+TA DPD  
Sbjct: 423 TATDRGTPPLSTETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCE 482

Query: 483 DNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPL 542
           +NA+ITYSLAE+T QGA LSSYVSINS+TG+LYAL SFDYEQFRDLQ+ + A D+G PPL
Sbjct: 483 ENAQITYSLAENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPL 542

Query: 543 SSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNA 602
           SSNVSLSLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQNA
Sbjct: 543 SSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNA 602

Query: 603 WLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTV 662
           WLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTV
Sbjct: 603 WLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTV 662

Query: 663 AVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKS 722
           AVADSIP VLADLGSL+  A+ + S LTLYLVVAVAAVSCVFLAFV +LLAL+LRRWHKS
Sbjct: 663 AVADSIPQVLADLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKS 722

Query: 723 RLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISR 782
           RLL A G  L G PASHFVGVDGV+AFLQTYSHEVSLT DSRKSHLIF QP+YAD L+S+
Sbjct: 723 RLLQASGGGLTGAPASHFVGVDGVQAFLQTYSHEVSLTTDSRKSHLIFPQPNYADMLVSQ 782

Query: 783 ESCEKSEPLLITQDLLETKGDPNL-QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 841
           ES EKSEPLL++ D + +K    L +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 783 ESFEKSEPLLLSGDSVFSKDSHGLIEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 842

Query: 842 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 901
           FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 843 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 902

Query: 902 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
           TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 903 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932


>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
           [Homo sapiens]
          Length = 935

 Score = 1362 bits (3526), Expect = 0.0
 Identities = 690/935 (73%), Positives = 784/935 (83%), Gaps = 4/935 (0%)

Query: 1   MAAPPARPDHTRLLQI-CLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPREL 59
           MA    R D +RLL + C+ LG L   RA QI YSV EE E+GS VGNI+KDLGL PREL
Sbjct: 1   MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60

Query: 60  AERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRV 119
           A+RGVRIVSRG+TQLFA+NPRSG+L+TAGRIDREELC+   +C  N+E+L+EDT+KI  V
Sbjct: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120

Query: 120 EVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFS 179
           EVEIID+NDN PSF  ++ EIKV+E+  PGARF LP A DPDVGVNSLQ YQL+ N YFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180

Query: 180 LDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNA 239
           L ++   DG K PELVLE +LDRE+EA H L+LTA DGGDP+R G   I ++++D ND+ 
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240

Query: 240 PVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSG 299
           P+FTQ  Y VSV EN+  GTR+L V ATDPDEG NG+V YSFR +  K S++FQL+S +G
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300

Query: 300 DITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQES 359
           ++ + G LD+E   FY+++++  DG GL   + +L+TV+D NDNAPE+T+TS  +S+ E+
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360

Query: 360 SSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYN 419
           S PGTVIAL NV D DSG NG V+C IP++LPF LEKTYGNYY+L+T R LDRE V  YN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420

Query: 420 ITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDP 479
           IT+TATDQG+PPLS ETH+ L V D NDNPP FPH+SYSAYIPENNPRGASI S+TA DP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480

Query: 480 DSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGD 539
           DS  NA +TYSL +DT QG PLSSYVSINSNTG+LYAL SFDYEQFRDL+L + A DSGD
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540

Query: 540 PPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSG 599
           PPLSSNVSLSLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVD+DSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600

Query: 600 QNAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVT 659
           QNAWLSY LLK+SEPGLFAVG HTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVT
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660

Query: 660 LTVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRW 719
           LTVAVADSIP+VLADLGSL+  A+ + S L+LYLVVAVAAVSC+FL FV VLLAL+L RW
Sbjct: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720

Query: 720 HKSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTL 779
           HKSRLL A    LAG+P SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIF QP+Y DTL
Sbjct: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780

Query: 780 ISRESCEKSEPLLITQD--LLETKGDP-NLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGT 836
           IS+ESCEKSEPLLI +D  ++  K DP + QQAPPNTDWRFSQAQRPGTSGSQNGDDTGT
Sbjct: 781 ISQESCEKSEPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGT 840

Query: 837 WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI 896
           WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI
Sbjct: 841 WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI 900

Query: 897 PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
           PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935


>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score = 1357 bits (3511), Expect = 0.0
 Identities = 690/921 (74%), Positives = 773/921 (83%)

Query: 11  TRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRG 70
           +RL+ +CL L +L+E  A  I YSV EE ++GS VGNIAKDLGL P+ELA+ GVRIVSRG
Sbjct: 11  SRLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRG 70

Query: 71  RTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNP 130
           R  LFALNPRSG+L+TA RIDREELC +S  C+ +  IL+ED +K+  VEVEIID+NDN 
Sbjct: 71  RMPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNT 130

Query: 131 PSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIK 190
           P F  E+ E K+ E   PG R  LP   D DVG+NSLQ YQL+SN +FSLDVQ GADG +
Sbjct: 131 PQFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQ 190

Query: 191 YPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVS 250
           +PE+VL+  LDREEEAVHHL+LTA DGG+PVRSGT RI I +VD NDN P FTQ +YH++
Sbjct: 191 HPEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHIN 250

Query: 251 VRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYE 310
           V ENVP+GT+LL V ATDPDEGANG+VTYSF  V  +++Q+F+L+S +G+I+    LD+E
Sbjct: 251 VPENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFE 310

Query: 311 DSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFN 370
           +   Y ++V+A DG GL A+ KVL+ VLD NDNAPEVT+TS+T++V E+  PGT+IAL +
Sbjct: 311 EYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALIS 370

Query: 371 VHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTP 430
           VHD DSG NG  TC IP NLPF LEK   NYYRL+T RTLDRE +S YNIT+TA DQGTP
Sbjct: 371 VHDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTP 430

Query: 431 PLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYS 490
            LSTETHISL V DINDN P F   SYSAYIPENNPRGASI S+ A D DS +NA+ITYS
Sbjct: 431 ALSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYS 490

Query: 491 LAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSL 550
           L EDT QGAPLS+Y+SINS+TG+LYAL SFDYEQFRD+QL + A DSGDPPLSSNVSLSL
Sbjct: 491 LIEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSL 550

Query: 551 FVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLK 610
           F+LDQNDN PEILYP  PTDGSTGVELAP SA+ GYLVTKVVAVDRDSGQNAWLSY LLK
Sbjct: 551 FLLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLK 610

Query: 611 SSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPD 670
           +SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTVAVAD I D
Sbjct: 611 ASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISD 670

Query: 671 VLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGS 730
           +LADLGSL+PSA P+DS LTLYLVVA AAVSCVFLAFV VLLA +LRRWHKSRLL A G 
Sbjct: 671 ILADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGG 730

Query: 731 RLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEP 790
            LA +P SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLIS+ESCEK   
Sbjct: 731 GLASMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKGF 790

Query: 791 LLITQDLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAM 850
           L   Q LLE K +P  QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAM
Sbjct: 791 LSAPQSLLEDKKEPFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAM 850

Query: 851 ILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKR 910
           ILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKR
Sbjct: 851 ILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKR 910

Query: 911 DGKAPAGGNGNKKKSGKKEKK 931
           DGKAPAGGNGNKKKSGKKEKK
Sbjct: 911 DGKAPAGGNGNKKKSGKKEKK 931


>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1349 bits (3491), Expect = 0.0
 Identities = 685/932 (73%), Positives = 768/932 (82%), Gaps = 1/932 (0%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MAAP       RL+ +C LLG+L E RA QI YSV EE E+G +VGNI+KDL L PRELA
Sbjct: 1   MAAPTKCQLRGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           ER VRIVSRGRTQLF+LNPRSGTLVTAGRIDREELC +SP C+ N ++L+ED VK+  +E
Sbjct: 61  ERRVRIVSRGRTQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIE 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           +E+ D+ND+ P F  E  E+K+ E   PGAR+PLPEA DPDVGVNSLQ YQL+ N +FSL
Sbjct: 121 IEVTDINDSAPKFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSL 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
           +VQ+G +G   PELVLERALDREE   HHLVLTA DGG+P RS T RI + ++DTNDNAP
Sbjct: 181 NVQTGDNGAINPELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           VF Q  Y V V ENVP GT LLT  A+D DEG NG V Y F K+ +K S LFQLN  +G+
Sbjct: 241 VFAQRIYRVKVLENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGE 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           I+    LDYE+  FY+++++A DG GL+  +KVL++V D NDN PEVT+TSL S V+E +
Sbjct: 301 ISTAKSLDYEECSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDA 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
             GTVI LFN HD DSG NG V CSI +NL FTLE +  +YYRLLT + LDRE+ SEYNI
Sbjct: 361 PQGTVILLFNAHDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           TVTATD+GTPPLSTE HI+LQV DINDNPP F  ASYS Y+PENN RG SI S+ A DPD
Sbjct: 421 TVTATDRGTPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
           S +N+R+ YSLAEDT QG+PLS+YVSINS+TG+LYALCSFDYEQFRDLQ+ +TASDSG P
Sbjct: 481 SNENSRVIYSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSNVSL LFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSY L K+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYRLFKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVA+ADSIPD+LADLGSL+  AD + S LTLYLVVAVA VSCVFL FV  LLAL+LR WH
Sbjct: 661 TVAIADSIPDILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
            S LL A    LAGVP SHFVGVDGVRAFLQTYS E SLTADSRKSHLIF QP+YADTLI
Sbjct: 721 SSHLLRATSDGLAGVPTSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTLI 780

Query: 781 SRESCEKSEPLLITQD-LLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 839
           S++SCEK+EPL ++ D     +  P + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 781 SQQSCEKNEPLCVSVDSKFPIEDTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 840

Query: 840 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 899
           NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 841 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 900

Query: 900 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
           NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932


>gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precursor
           [Homo sapiens]
          Length = 829

 Score = 1170 bits (3026), Expect = 0.0
 Identities = 592/796 (74%), Positives = 671/796 (84%)

Query: 13  LLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRT 72
           L  +C LLG L E  + QI YSV EE ++GS VGNIA DLGL PRELAERGVRIVSRGRT
Sbjct: 13  LALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRT 72

Query: 73  QLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPS 132
           QLF+LNP+SG+LVTA RIDREELC + P C+  + IL+ED +KI  VE+EI D+NDN P+
Sbjct: 73  QLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPN 132

Query: 133 FGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYP 192
           F TE+ EIK+ E   PG RFP+  AFDPDVG+NSLQ Y+L+ N YFSL V S ++G KYP
Sbjct: 133 FPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYP 192

Query: 193 ELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVR 252
           ELVLERALDRE++ +H LVL A DGGDPV SG   I +I++D NDN P+FTQPEY VSV 
Sbjct: 193 ELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVW 252

Query: 253 ENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDS 312
           ENVPVGTRLLTV ATDPDEG N  V+Y   K+  KI+++F LNS+SG+++IL  LDYED+
Sbjct: 253 ENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDA 312

Query: 313 GFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVH 372
            FY+I +EA DGPGL +R+K+LVTVLD NDNAPE+T+TSLTSSV E  + G  IAL +VH
Sbjct: 313 MFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVH 372

Query: 373 DSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPL 432
           D DSG NG V   +  NLPF LEK+   YYRL+T  +LDRE++SEYNI++ A+D G+PPL
Sbjct: 373 DRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPL 432

Query: 433 STETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLA 492
           STETHI+L V+DINDNPPTFPH SYSAYIPENNPRGASI S+TAQDPDS +NARITY+L 
Sbjct: 433 STETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALT 492

Query: 493 EDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFV 552
           EDT QGAPLSS+VSINSNTG+LYAL SFDYEQFRDL+LL+TASDSG+PPLSSNVSL+LFV
Sbjct: 493 EDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFV 552

Query: 553 LDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSS 612
           LDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQNAWLSY LLK+S
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612

Query: 613 EPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVL 672
           EPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTVAVAD IPD+L
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDIL 672

Query: 673 ADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRL 732
           ADLGSL+PSA P+DS LTLYLVVAVAAVSCVFLAFV VLLAL+LRRWHKSRLL A G  L
Sbjct: 673 ADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGL 732

Query: 733 AGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEPLL 792
           A  P SHFVG DGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLIS+ESCEKSEPLL
Sbjct: 733 ASTPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLL 792

Query: 793 ITQDLLETKGDPNLQQ 808
           ITQDLLE KGD NL Q
Sbjct: 793 ITQDLLEMKGDSNLLQ 808


>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
           [Homo sapiens]
          Length = 818

 Score = 1162 bits (3006), Expect = 0.0
 Identities = 594/817 (72%), Positives = 675/817 (82%), Gaps = 3/817 (0%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MA P   P  +  + +  LLG L    A QI YS+ EE E+GS VGNI KDLGL P+ELA
Sbjct: 1   MAPPQRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           E GVRIVSRGR QLF+LNPR+G+LVTAGRIDREELC +SP C+ +  IL+ED + +  VE
Sbjct: 61  EHGVRIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVE 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           VEI+D+NDN P F  E+ E+K+ EN  P +RFPL E +DPDVG+NSLQG++L+ N +FS+
Sbjct: 121 VEIVDINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSV 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
           DVQS A G KYPELVLE  LDRE EAV+ LVLTA DGGDPVRS  A+IL+ ++D NDN P
Sbjct: 181 DVQSEAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           +FTQP Y VSV EN+PVGT +L V ATD DEG +G+VTYSF K+ +KISQ+F LN L+G+
Sbjct: 241 MFTQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGE 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           I+    LDYEDS FY++ VEA DGPGLR R+KVL+T+LD NDN PEV VTS + ++ ES+
Sbjct: 301 ISTSANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESA 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
            PGTVIALF V D DSG NGLVTCSIP +LPF LEK+ GNYYRL+T+  LDREEV  YNI
Sbjct: 361 PPGTVIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           TVTATD+GTPPLSTET ISL V D NDNPPTFPH+SYS Y+ ENNPRGASI S+ A DPD
Sbjct: 421 TVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
              NA+++YSLAEDT QGAPLSSYVSINS+TGILYAL SFDYEQ RDLQL +TASDSGDP
Sbjct: 481 VDQNAQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSNVSLSLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVAVAD IPD+LADLGSL+PSA P+DS LTLYLVVAVAAVSCVFLAFV VLLAL+L+RWH
Sbjct: 661 TVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
           KSRLL A G  LA +P SHFVGV+GVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLI
Sbjct: 721 KSRLLQASGGGLASMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLI 780

Query: 781 SRESCEKSEPLLITQDLLETKGDPNLQQA---PPNTD 814
           ++ES EKSEPLLITQDLLETKG+P   Q    PP  +
Sbjct: 781 NQESYEKSEPLLITQDLLETKGEPRQLQVSFFPPKRE 817


>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
           [Homo sapiens]
          Length = 813

 Score = 1140 bits (2949), Expect = 0.0
 Identities = 590/807 (73%), Positives = 662/807 (82%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MA+PP       LL   +LLG L E  + QI YS+ EE ++GS VGNIAKDLGL P+ELA
Sbjct: 1   MASPPRGWGCGELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           ERGVRIVSRGRTQLFALNPRSG+LVTAGRIDREELC +SP CV N  IL+E+ +KI  VE
Sbjct: 61  ERGVRIVSRGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVE 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           VEIID+NDN P F  E+ ++KV EN   G R  LP A D DVGVNSL+ YQL+SN +FSL
Sbjct: 121 VEIIDINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSL 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
           DV SG DG KYPELVLE+ LDRE+E VH L+LTA DGGDPV SGT  I + ++D NDNAP
Sbjct: 181 DVVSGTDGQKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           +FT  EY VSV EN+PVGTRLL + ATDPDEG NG +TYSFR   +KIS+ FQL+S  G+
Sbjct: 241 LFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGE 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           I+ L  LDYE+S FY ++V A DG  L A +KV+VTV D NDNAPEV +TSLTSS+ E  
Sbjct: 301 ISTLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDC 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
            PGTVIALF+VHD DSG NG + CSIP NLPF LEK+  NYY LLT R LDREE S+YNI
Sbjct: 361 LPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           T+T  D GTPPLSTE+HI L+V D+NDNPP FP ASYS  + ENNPRG SI S+TA DPD
Sbjct: 421 TLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
           SGDNAR+TYSLAEDTFQGAPLSSYVSINS+TG+LYAL SFDYEQ RDLQL +TASDSG+P
Sbjct: 481 SGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSNVSLSLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVD+DSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSY LLK+SEPGLFAVGLHTGEVRTARALLDRDALKQ LVV V+DHGQPPLSAT T+
Sbjct: 601 NAWLSYRLLKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTV 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVAVAD IPD+LADLGS+K   DP+D  LTLYLVVAVAAVSCVFLAFV VLL L+LRRWH
Sbjct: 661 TVAVADRIPDILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
           KSRLL AEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTL+
Sbjct: 721 KSRLLQAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLL 780

Query: 781 SRESCEKSEPLLITQDLLETKGDPNLQ 807
           S ESCEKSEPLL++  +   K +  +Q
Sbjct: 781 SEESCEKSEPLLMSDKVDANKEERRVQ 807


>gi|7662056 protocadherin gamma subfamily A, 8 isoform 2 precursor
           [Homo sapiens]
          Length = 820

 Score = 1132 bits (2927), Expect = 0.0
 Identities = 577/803 (71%), Positives = 656/803 (81%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MAAP +RP    L+ +C LLG L EI   QI YSV EE ++GS VGNI+KDLGL PR+LA
Sbjct: 1   MAAPQSRPRRGELILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           + GVRIVSRGRTQLFALNPRSG+L+TAGRIDREELC +SP C+ N+  L+ED  K+  VE
Sbjct: 61  KHGVRIVSRGRTQLFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVE 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           +EIID+NDN P F  E  E+K+ E   PGAR+PLPEA DPDVGVNSLQ YQL+ N +FSL
Sbjct: 121 IEIIDINDNNPKFQVEDLEVKINEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSL 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
           DVQ+G +G   PELVLERALDREEEA HHLVLTA DGG P RS T RI + ++DTNDNAP
Sbjct: 181 DVQTGDNGAINPELVLERALDREEEAAHHLVLTASDGGKPPRSSTVRIHVTVLDTNDNAP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           VF  P Y V V EN+P GTRLLTV A+DPDEG NG V Y FRK+ +K + LFQLN  +G+
Sbjct: 241 VFPHPIYRVKVLENMPPGTRLLTVTASDPDEGINGKVAYKFRKINEKQTPLFQLNENTGE 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           I+I   LDYE+  FY+++++A D   L  R+K+L++V D NDN PEV +TSL S V E+S
Sbjct: 301 ISIAKSLDYEECSFYEMEIQAEDVGALLGRTKLLISVEDVNDNRPEVIITSLFSPVLENS 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
            PGTVIA  +VHD DSG NG V C   DNLPF LEK+ GNYYRL+T + LDRE VS YNI
Sbjct: 361 LPGTVIAFLSVHDQDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           TV A+D GTPPLSTET I+L V DINDNPPTFPHASYSAYI ENN RGASI S+TA DPD
Sbjct: 421 TVMASDLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
           S +NA++TYS+ EDT QGAPLSSY+SINS+TG+LYAL SFDYEQ RDLQLL+TASDSGDP
Sbjct: 481 SQENAQVTYSVTEDTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSN+SLSLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVAVADSIP+VL +LGSLKPS DP+DS LTLYLVVAVAA+SCVFLAFV VLL L+LRRWH
Sbjct: 661 TVAVADSIPEVLTELGSLKPSVDPNDSSLTLYLVVAVAAISCVFLAFVAVLLGLRLRRWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
           KSRLL   G RL GVPASHFVGV+ V+AFLQTYS EVSLTADSRKSHLIF QP+YAD LI
Sbjct: 721 KSRLLQDSGGRLVGVPASHFVGVEEVQAFLQTYSQEVSLTADSRKSHLIFPQPNYADMLI 780

Query: 781 SRESCEKSEPLLITQDLLETKGD 803
           S+E CEK++ LL + D  E K +
Sbjct: 781 SQEGCEKNDSLLTSVDFHEYKNE 803


>gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precursor
           [Homo sapiens]
          Length = 817

 Score = 1128 bits (2917), Expect = 0.0
 Identities = 578/811 (71%), Positives = 666/811 (82%), Gaps = 1/811 (0%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MAA P   D+     + +LLG   E  A +ILYSV EE ++GS VG+IAKDLGL PRELA
Sbjct: 1   MAAQPRGGDYRGFFLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           ERGVRI+SRGRTQLFALN RSG+LVTAGRIDREE+C +S  C+ N  IL+ED + +  ++
Sbjct: 61  ERGVRIISRGRTQLFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPID 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           VEIID+NDN P F TE+  +K+ EN  PG RFPL EA DPDVG NSLQ YQL+ N +FSL
Sbjct: 121 VEIIDINDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSL 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
            VQSG D  KYPELVLER LDREEE VHHLVLTA DGGDP RS TA I + +VD ND+ P
Sbjct: 181 AVQSGDDETKYPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           VF+ P+Y V+V ENVPVGTRLLTV A D DEG NG+VTYSFRK+  K+ ++F LNSL+G+
Sbjct: 241 VFSLPQYQVTVPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGE 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           I+ L GLDYE++ FY+++V+A DGPG   ++KVL+TVLD NDNAPEVT+TSL+SS+ E +
Sbjct: 301 ISTLEGLDYEETAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDT 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
             GTVIALF + D DSG NG VTC+IP+NLPF LEK+  NYYRL+T + LDRE +S YNI
Sbjct: 361 PLGTVIALFYLQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           T+ ATD GTPPLS ETHI +QV D NDNPPTFPH+SYS YI ENNPRGASI  +TAQD D
Sbjct: 421 TLKATDGGTPPLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
           S DNA+ITYSLAEDT QGAP+SSYVSINS+TG+LYAL SFDYEQ R+LQL +TA DSGDP
Sbjct: 481 SEDNAQITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSN+SLSLFVLDQNDN PEILYP  PTDGSTG+ELAPRSA+ GYLVTKVVAVD+DSGQ
Sbjct: 541 PLSSNMSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSY LLK+SEPGLFAVGL+TGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVAVADSIP+VLADLGSL+PS  P +  LTLYLVVAVA VSCVFLAFV VLLAL+LRRWH
Sbjct: 661 TVAVADSIPEVLADLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
           KSRLL A    LA VP SHFVG+DGV+AFLQTYSHEVSLTADSRKSHLIF QP+Y D LI
Sbjct: 721 KSRLLQASEGGLANVPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLI 780

Query: 781 SRESCEKSEPLLITQDLLETKGD-PNLQQAP 810
           S+ESCEK++ LL + D  E K + P++Q +P
Sbjct: 781 SQESCEKNDSLLTSVDFQECKENLPSIQVSP 811


>gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precursor
           [Homo sapiens]
          Length = 823

 Score = 1122 bits (2902), Expect = 0.0
 Identities = 575/808 (71%), Positives = 648/808 (80%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MAA    P   +L+ +C LL  L E RA QI YSV EE + GS VGNIAKDLGL P  LA
Sbjct: 1   MAALQKLPHCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           E+GVRIVSRGR+QLFALNPRSG+LVTA RIDREELC +S  C+ N  ILLED + I  VE
Sbjct: 61  EQGVRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVE 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           VEI D+NDN P FG E+ E+K++E   PG R PL  A D DVG N+LQ Y LN N +FSL
Sbjct: 121 VEITDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSL 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
           DV+ GADG KYPELVLER+LDREEEAVHHLVL A DGGDPV SGT+RI + ++D NDNAP
Sbjct: 181 DVRRGADGNKYPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           VFTQPEY +S+ EN  VGTR+LTV ATD DEG    V Y   K   + S++F+L S SG+
Sbjct: 241 VFTQPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGE 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           +TI+  LDYED+ F++ID+EA DGPGL  R+KV+VTVLD NDNAPE  +TS TSSV E S
Sbjct: 301 LTIIKDLDYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDS 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
            PGT+I LFNVHD DSG N   TCS+P++LPF LEK+  NYYRL+T R LDRE+ S YNI
Sbjct: 361 LPGTIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           T+TA D G P LST+ HI LQV DINDN P F   SYS YIPENNPRGAS+ S+TA DPD
Sbjct: 421 TLTAKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
           S DNA +TYS AEDT QGAPLSSY+SINS+TG+LYAL SFDYEQ RDLQ+ + A DSG+P
Sbjct: 481 SNDNAHVTYSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSNVSLSLFVLDQNDN PEILYP FPTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV +QDHGQPPLSATVTL
Sbjct: 601 NAWLSYHLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTL 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVAVAD IPD+LADLGSL+PSA P+DS LTLYLVVAVAAVSCVFLAFV VLLA +LRRWH
Sbjct: 661 TVAVADRIPDILADLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
           KSRLL A G  L G+ +SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLI
Sbjct: 721 KSRLLQASGGSLTGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLI 780

Query: 781 SRESCEKSEPLLITQDLLETKGDPNLQQ 808
           S+ESCEK + L   Q LLE + +    Q
Sbjct: 781 SQESCEKKDFLSAPQSLLEEEREETFSQ 808


>gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precursor
           [Homo sapiens]
          Length = 850

 Score = 1121 bits (2899), Expect = 0.0
 Identities = 572/788 (72%), Positives = 646/788 (81%)

Query: 9   DHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVS 68
           D + L+ +CL  G+  E  A QI YS+ EE E+GS VGNI+KDLGLAPRELAERGVRIVS
Sbjct: 13  DCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVS 72

Query: 69  RGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVND 128
           RGRTQLF+LNPRSG+L+TAGRIDREELC +S  CV +  IL+ED VK+  +E+E+ D+ND
Sbjct: 73  RGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDIND 132

Query: 129 NPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADG 188
           N P F  E  ++K+ EN   G RFPLPEA DPDVGVNSLQ YQL+ N +FSL VQS A+G
Sbjct: 133 NAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANG 192

Query: 189 IKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYH 248
           +KYPELVLE +LDREEEA+HHLVLTA DGGDP+RSGT  + + + D NDNAPVFT PEY 
Sbjct: 193 VKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYR 252

Query: 249 VSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLD 308
           VSV EN+PVGT+LLTV ATD DEGANG+VTYSFRK+ D     FQLN  +G+I I   LD
Sbjct: 253 VSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISENLD 312

Query: 309 YEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIAL 368
           YE++GFY+I+++A DG    A +KVL+TV D NDN+PE+T+TSL S V E S  GTV+AL
Sbjct: 313 YEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVAL 372

Query: 369 FNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQG 428
            NVHD DS  NG VTCSI   LPF LEK+  +YYRL+ HR LDRE+VS YNITVTATD G
Sbjct: 373 LNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGG 432

Query: 429 TPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARIT 488
           +PPLSTE H  LQV DINDNPPTF   SY  YIPENN RGASI S+TA DPDS +NA+I 
Sbjct: 433 SPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQII 492

Query: 489 YSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSL 548
           YSLAEDT QG PLSSY+SINS+TG+LYAL SFDYEQF +LQ+ +TASDSGDPPLSSNVSL
Sbjct: 493 YSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSL 552

Query: 549 SLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSL 608
           SLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQNAWLSY L
Sbjct: 553 SLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRL 612

Query: 609 LKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSI 668
           LK+SEPGLFAVG HTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTVAVADSI
Sbjct: 613 LKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSI 672

Query: 669 PDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAE 728
           P VLADLGS +  A+ + S LTLYLVVAVAAVSCVFLAFV VLLA +LRRWHKSRLL A 
Sbjct: 673 PQVLADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQAS 732

Query: 729 GSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKS 788
           G  L GV  SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLIS+ESCEK+
Sbjct: 733 GGGLTGVSGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKN 792

Query: 789 EPLLITQD 796
           +PL +  D
Sbjct: 793 DPLSLLDD 800


>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
           [Homo sapiens]
          Length = 820

 Score = 1116 bits (2887), Expect = 0.0
 Identities = 576/804 (71%), Positives = 659/804 (81%), Gaps = 2/804 (0%)

Query: 5   PAR--PDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAER 62
           PAR   D+  L+ + +LLG L E    QI YSV EE E+GS VG+I++DLGL PRELAER
Sbjct: 3   PARLHRDYKGLVLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAER 62

Query: 63  GVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVE 122
           GVRI+ RGRTQLFALNPRSG+LVTAGRIDREELC  +  C  NL+IL+ED VKI  VEVE
Sbjct: 63  GVRIIPRGRTQLFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVE 122

Query: 123 IIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDV 182
           + D+NDN P F   + EIK++EN     RFPLP A+DPD+G NSLQ Y+L+ N +FSL V
Sbjct: 123 VRDINDNAPYFRESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIV 182

Query: 183 QSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVF 242
           Q+GADG KYPELVL+RALDREE+A HHLVLTA DGGDPVR+GTARI ++++D NDNAP F
Sbjct: 183 QNGADGSKYPELVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAF 242

Query: 243 TQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDIT 302
            QPEY  SV EN+ +GT+LL V ATDPDEG N +V YSFR V DK +Q+F+L+  SG I+
Sbjct: 243 AQPEYRASVPENLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTIS 302

Query: 303 ILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSP 362
            +G LD+E+SGFY ++V+A D  G  AR+KVL+TVLD NDNAPEV +TSL SSV E+S  
Sbjct: 303 TIGELDHEESGFYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPR 362

Query: 363 GTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITV 422
           GT+IAL NV+D DS  NG V C I  NLPF LEK+YGNYY L+T   LDRE+V  YNITV
Sbjct: 363 GTLIALLNVNDQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITV 422

Query: 423 TATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSG 482
           TATD+GTPPLSTETHISL V D NDNPP FP ASYSAYIPENNPRG S++S+TA DPD  
Sbjct: 423 TATDRGTPPLSTETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCE 482

Query: 483 DNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPL 542
           +NA+ITYSLAE+T QGA LSSYVSINS+TG+LYAL SFDYEQFRDLQ+ + A D+G PPL
Sbjct: 483 ENAQITYSLAENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPL 542

Query: 543 SSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNA 602
           SSNVSLSLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQNA
Sbjct: 543 SSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNA 602

Query: 603 WLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTV 662
           WLSY LLK+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTV
Sbjct: 603 WLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTV 662

Query: 663 AVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKS 722
           AVADSIP VLADLGSL+  A+ + S LTLYLVVAVAAVSCVFLAFV +LLAL+LRRWHKS
Sbjct: 663 AVADSIPQVLADLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKS 722

Query: 723 RLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISR 782
           RLL A G  L G PASHFVGVDGV+AFLQTYSHEVSLT DSRKSHLIF QP+YAD L+S+
Sbjct: 723 RLLQASGGGLTGAPASHFVGVDGVQAFLQTYSHEVSLTTDSRKSHLIFPQPNYADMLVSQ 782

Query: 783 ESCEKSEPLLITQDLLETKGDPNL 806
           ES EKSEPLL++ D + +K    L
Sbjct: 783 ESFEKSEPLLLSGDSVFSKDSHGL 806


>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
           [Homo sapiens]
          Length = 837

 Score = 1114 bits (2882), Expect = 0.0
 Identities = 569/820 (69%), Positives = 662/820 (80%), Gaps = 8/820 (0%)

Query: 1   MAAPPARPDHTRLLQI-CLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPREL 59
           MA    R D +RLL + C+ LG L   RA QI YSV EE E+GS VGNI+KDLGL PREL
Sbjct: 1   MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60

Query: 60  AERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRV 119
           A+RGVRIVSRG+TQLFA+NPRSG+L+TAGRIDREELC+   +C  N+E+L+EDT+KI  V
Sbjct: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120

Query: 120 EVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFS 179
           EVEIID+NDN PSF  ++ EIKV+E+  PGARF LP A DPDVGVNSLQ YQL+ N YFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180

Query: 180 LDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNA 239
           L ++   DG K PELVLE +LDRE+EA H L+LTA DGGDP+R G   I ++++D ND+ 
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240

Query: 240 PVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSG 299
           P+FTQ  Y VSV EN+  GTR+L V ATDPDEG NG+V YSFR +  K S++FQL+S +G
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300

Query: 300 DITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQES 359
           ++ + G LD+E   FY+++++  DG GL   + +L+TV+D NDNAPE+T+TS  +S+ E+
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360

Query: 360 SSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYN 419
           S PGTVIAL NV D DSG NG V+C IP++LPF LEKTYGNYY+L+T R LDRE V  YN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420

Query: 420 ITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDP 479
           IT+TATDQG+PPLS ETH+ L V D NDNPP FPH+SYSAYIPENNPRGASI S+TA DP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480

Query: 480 DSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGD 539
           DS  NA +TYSL +DT QG PLSSYVSINSNTG+LYAL SFDYEQFRDL+L + A DSGD
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540

Query: 540 PPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSG 599
           PPLSSNVSLSLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVD+DSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600

Query: 600 QNAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVT 659
           QNAWLSY LLK+SEPGLFAVG HTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVT
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660

Query: 660 LTVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRW 719
           LTVAVADSIP+VLADLGSL+  A+ + S L+LYLVVAVAAVSC+FL FV VLLAL+L RW
Sbjct: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720

Query: 720 HKSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTL 779
           HKSRLL A    LAG+P SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIF QP+Y DTL
Sbjct: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780

Query: 780 ISRESCEKSEPLLITQD--LLETKGDPNLQQA-----PPN 812
           IS+ESCEKSEPLLI +D  ++  K DP   Q      PPN
Sbjct: 781 ISQESCEKSEPLLIAEDSAIILGKCDPTSNQVRFISLPPN 820


>gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precursor
           [Homo sapiens]
          Length = 823

 Score = 1102 bits (2851), Expect = 0.0
 Identities = 565/794 (71%), Positives = 648/794 (81%)

Query: 11  TRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRG 70
           +RL+ +CL L +L+E  A  I YSV EE ++GS VGNIAKDLGL P+ELA+ GVRIVSRG
Sbjct: 11  SRLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRG 70

Query: 71  RTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNP 130
           R  LFALNPRSG+L+TA RIDREELC +S  C+ +  IL+ED +K+  VEVEIID+NDN 
Sbjct: 71  RMPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNT 130

Query: 131 PSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIK 190
           P F  E+ E K+ E   PG R  LP   D DVG+NSLQ YQL+SN +FSLDVQ GADG +
Sbjct: 131 PQFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQ 190

Query: 191 YPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVS 250
           +PE+VL+  LDREEEAVHHL+LTA DGG+PVRSGT RI I +VD NDN P FTQ +YH++
Sbjct: 191 HPEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHIN 250

Query: 251 VRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYE 310
           V ENVP+GT+LL V ATDPDEGANG+VTYSF  V  +++Q+F+L+S +G+I+    LD+E
Sbjct: 251 VPENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFE 310

Query: 311 DSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFN 370
           +   Y ++V+A DG GL A+ KVL+ VLD NDNAPEVT+TS+T++V E+  PGT+IAL +
Sbjct: 311 EYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALIS 370

Query: 371 VHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTP 430
           VHD DSG NG  TC IP NLPF LEK   NYYRL+T RTLDRE +S YNIT+TA DQGTP
Sbjct: 371 VHDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTP 430

Query: 431 PLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYS 490
            LSTETHISL V DINDN P F   SYSAYIPENNPRGASI S+ A D DS +NA+ITYS
Sbjct: 431 ALSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYS 490

Query: 491 LAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSL 550
           L EDT QGAPLS+Y+SINS+TG+LYAL SFDYEQFRD+QL + A DSGDPPLSSNVSLSL
Sbjct: 491 LIEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSL 550

Query: 551 FVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLK 610
           F+LDQNDN PEILYP  PTDGSTGVELAP SA+ GYLVTKVVAVDRDSGQNAWLSY LLK
Sbjct: 551 FLLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLK 610

Query: 611 SSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPD 670
           +SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTLTVAVAD I D
Sbjct: 611 ASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISD 670

Query: 671 VLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGS 730
           +LADLGSL+PSA P+DS LTLYLVVA AAVSCVFLAFV VLLA +LRRWHKSRLL A G 
Sbjct: 671 ILADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGG 730

Query: 731 RLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEP 790
            LA +P SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF QP+YADTLIS+ESCEK   
Sbjct: 731 GLASMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKGF 790

Query: 791 LLITQDLLETKGDP 804
           L   Q LLE K +P
Sbjct: 791 LSAPQSLLEDKKEP 804


>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
           [Homo sapiens]
          Length = 828

 Score = 1100 bits (2844), Expect = 0.0
 Identities = 560/796 (70%), Positives = 641/796 (80%)

Query: 1   MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA 60
           MAAP       RL+ +C LLG+L E RA QI YSV EE E+G +VGNI+KDL L PRELA
Sbjct: 1   MAAPTKCQLRGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELA 60

Query: 61  ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE 120
           ER VRIVSRGRTQLF+LNPRSGTLVTAGRIDREELC +SP C+ N ++L+ED VK+  +E
Sbjct: 61  ERRVRIVSRGRTQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIE 120

Query: 121 VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL 180
           +E+ D+ND+ P F  E  E+K+ E   PGAR+PLPEA DPDVGVNSLQ YQL+ N +FSL
Sbjct: 121 IEVTDINDSAPKFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSL 180

Query: 181 DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP 240
           +VQ+G +G   PELVLERALDREE   HHLVLTA DGG+P RS T RI + ++DTNDNAP
Sbjct: 181 NVQTGDNGAINPELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAP 240

Query: 241 VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD 300
           VF Q  Y V V ENVP GT LLT  A+D DEG NG V Y F K+ +K S LFQLN  +G+
Sbjct: 241 VFAQRIYRVKVLENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGE 300

Query: 301 ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS 360
           I+    LDYE+  FY+++++A DG GL+  +KVL++V D NDN PEVT+TSL S V+E +
Sbjct: 301 ISTAKSLDYEECSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDA 360

Query: 361 SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI 420
             GTVI LFN HD DSG NG V CSI +NL FTLE +  +YYRLLT + LDRE+ SEYNI
Sbjct: 361 PQGTVILLFNAHDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNI 420

Query: 421 TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD 480
           TVTATD+GTPPLSTE HI+LQV DINDNPP F  ASYS Y+PENN RG SI S+ A DPD
Sbjct: 421 TVTATDRGTPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPD 480

Query: 481 SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP 540
           S +N+R+ YSLAEDT QG+PLS+YVSINS+TG+LYALCSFDYEQFRDLQ+ +TASDSG P
Sbjct: 481 SNENSRVIYSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSP 540

Query: 541 PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ 600
           PLSSNVSL LFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVDRDSGQ
Sbjct: 541 PLSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600

Query: 601 NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL 660
           NAWLSY L K+SEPGLF+VGLHTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVTL
Sbjct: 601 NAWLSYRLFKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660

Query: 661 TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH 720
           TVA+ADSIPD+LADLGSL+  AD + S LTLYLVVAVA VSCVFL FV  LLAL+LR WH
Sbjct: 661 TVAIADSIPDILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWH 720

Query: 721 KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI 780
            S LL A    LAGVP SHFVGVDGVRAFLQTYS E SLTADSRKSHLIF QP+YADTLI
Sbjct: 721 SSHLLRATSDGLAGVPTSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTLI 780

Query: 781 SRESCEKSEPLLITQD 796
           S++SCEK+EPL ++ D
Sbjct: 781 SQQSCEKNEPLCVSVD 796


>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score =  908 bits (2347), Expect = 0.0
 Identities = 484/938 (51%), Positives = 622/938 (66%), Gaps = 14/938 (1%)

Query: 1   MAAPPARPDHTRLLQICL--LLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRE 58
           M A   R    R LQ+ L  LL +       QI YS+ EE  + SVVGN+AKDLGL+ R+
Sbjct: 1   MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60

Query: 59  LAERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILR 118
           L  R +R+ +    + F +NP SG L+ + RIDRE++C + P CV + + + E+ + I  
Sbjct: 61  LPARKLRVSAE--KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFY 118

Query: 119 VEVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYF 178
           + V + D+NDN P F   +  +K+ E+  PG  FPL  A D DVG NSLQ Y LN N YF
Sbjct: 119 IAVIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYF 178

Query: 179 SLDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDN 238
            L  +   DG KYPEL+L+ +LDREE ++H LVLTA DGGDP +SGT +I I + D NDN
Sbjct: 179 DLAEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDN 238

Query: 239 APVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLS 298
            PVF+Q  Y V++RE+VP G  +L V ATD DEG N ++TYSF  V +++   F LN  +
Sbjct: 239 PPVFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKT 298

Query: 299 GDITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQE 358
           G+IT    LD+E +  Y + +EA D   L A   + V +LD+ND APEV VTS+++ + E
Sbjct: 299 GEITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPE 358

Query: 359 SSSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEY 418
            S PGTVIAL    D DSG NG V C +  N  F L+ +  NYY+L+T   LDREE+ EY
Sbjct: 359 DSPPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEY 418

Query: 419 NITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQD 478
           N+T+TATD G PPLS+   ++L + D+NDN P F   SY  ++ ENNP GASI  ++A D
Sbjct: 419 NLTITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASD 478

Query: 479 PDSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSG 538
           PD G + +++YS+     +   + SYVS+++ +G+++A  +FD+EQ R  +L + A D G
Sbjct: 479 PDLGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQG 538

Query: 539 DPPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDS 598
            P LS+NVSL + V D NDN P +LYP    DGS   ++ PR+A+ GYLVTKVVAVD DS
Sbjct: 539 SPALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADS 598

Query: 599 GQNAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATV 658
           G NAWLSY +L++SEPGLF++GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT 
Sbjct: 599 GHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATA 658

Query: 659 TLTVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRR 718
           TL +  ADS+ +VL DL   +  +DP  + L  YLVVA+A +S +F   V + ++L+LR 
Sbjct: 659 TLHLIFADSLQEVLPDLSDRREPSDP-QAKLQFYLVVALALISVLFFLAVILAISLRLRL 717

Query: 719 WHKSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPS---- 774
             +S         L+  P      +         YS+ + + + S K+   F   +    
Sbjct: 718 SSRSDAWDCFQPGLSSKPGPGV--LPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELV 775

Query: 775 -YADTLISRESCEKSEPLLITQDLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDD 833
              D +    S E++         +    D  L+QAPPNTDWRFSQAQRPGTSGSQNGDD
Sbjct: 776 PAQDLVCDNASWEQNTNHGAAG--VPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDD 833

Query: 834 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN 893
           TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN
Sbjct: 834 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN 893

Query: 894 VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
           VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 894 VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931


>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
           [Homo sapiens]
          Length = 929

 Score =  907 bits (2344), Expect = 0.0
 Identities = 479/916 (52%), Positives = 619/916 (67%), Gaps = 8/916 (0%)

Query: 18  LLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFAL 77
           LLL +      E I YS+ EE  +GSVVGN+AKDLGL+  +++ R +R+ +      F++
Sbjct: 20  LLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH--FSV 77

Query: 78  NPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQ 137
           + +SG L+   RIDRE++C     C   LE ++E+ + I  V V I DVND+ P F  ++
Sbjct: 78  DAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFRKDE 137

Query: 138 REIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLE 197
             ++++E+ + G    L  A DPD+ +NSL  YQL+ N YFSL  +   DG KYPELVL+
Sbjct: 138 INLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPELVLQ 197

Query: 198 RALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPV 257
           + LDRE ++ HHLVLTA DGGDP RSGTA+I I+++D NDN PVF+Q  Y VS+RE+VP 
Sbjct: 198 KTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLREDVPP 257

Query: 258 GTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDI 317
           GT +L VKATD DEG N ++TYSF  V DK   +F L+  +G+I     LD+E+   Y I
Sbjct: 258 GTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVERYTI 317

Query: 318 DVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSG 377
           ++EA D   L  R KV+V V+DENDN+PE+ +TSL+  + E S PG V+ALF   D DSG
Sbjct: 318 NIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQDSG 377

Query: 378 GNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETH 437
            NG V CS+   +PF +  +  NYY+L+T   LDRE+  EYN+T+ ATD+G PPLS+   
Sbjct: 378 ENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKT 437

Query: 438 ISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQ 497
           I+L + D+NDN P F  ++Y  ++PENN  GASI  ++A DPD G N R++YSL     +
Sbjct: 438 ITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIASDLE 497

Query: 498 GAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQND 557
              LSSYVS+++ +G+++A  +FD+EQ R  +L + A D G P LS+NVSL + V D+ND
Sbjct: 498 SRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRND 557

Query: 558 NVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLF 617
           N P +LYP    DGS   +  PR+A  GYLVTKVVAVD DSG NAWLSY ++++SEPGLF
Sbjct: 558 NAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLF 617

Query: 618 AVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGS 677
           ++GL TGEVR  RAL D+D+++QRL+V V+D GQPPLSAT TL +  ADS+ +VL D  S
Sbjct: 618 SLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDF-S 676

Query: 678 LKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRLAGVPA 737
             P+     + +  YLVVA+A +S +FL  V + +AL+LR+           S L     
Sbjct: 677 DHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCS--K 734

Query: 738 SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEPLLITQDL 797
           S  VG          Y++   +  D       F   S      ++++  K   LL +   
Sbjct: 735 SGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFF-TSVDHCPATQDNLNKDSMLLASILT 793

Query: 798 LETKGDPNL--QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASA 855
              + D  +  QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASA
Sbjct: 794 PSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASA 853

Query: 856 SEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAP 915
           SEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAP
Sbjct: 854 SEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAP 913

Query: 916 AGGNGNKKKSGKKEKK 931
           AGGNGNKKKSGKKEKK
Sbjct: 914 AGGNGNKKKSGKKEKK 929


>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
           [Homo sapiens]
          Length = 929

 Score =  902 bits (2331), Expect = 0.0
 Identities = 483/932 (51%), Positives = 625/932 (67%), Gaps = 20/932 (2%)

Query: 8   PDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIV 67
           P   R +    LL +L ++ +E I Y++ EE + GS+VGN+AKDLG    +L  R +R++
Sbjct: 10  PAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVI 69

Query: 68  SRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVN 127
           +  +   F ++P +G L+ + RIDREE+C +   CV   E++ E  +    V V I D+N
Sbjct: 70  AEKK--FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDIN 127

Query: 128 DNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGAD 187
           DNPP+F     E++++E    GA F L  A DPDVGVNSLQ Y L+ + +FSL  +   D
Sbjct: 128 DNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLD 187

Query: 188 GIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEY 247
           G +YPELVL+  LDREE+  HHLVLTA DGG+P RS T +I +I+ D NDN PVFTQ  Y
Sbjct: 188 GSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMY 247

Query: 248 HVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGL 307
            V+V EN+P G+ +L V A D DEG N ++ Y+F  +  ++ QLF+L+S +G++T +G L
Sbjct: 248 RVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGEL 307

Query: 308 DYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIA 367
           D+E+   Y I VEA DG    A  KV + + DENDNAPE+T+ S +  +QE +  GT +A
Sbjct: 308 DFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVA 367

Query: 368 LFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQ 427
           L   HD DSG NG + C +  N PF + +   N YRL+T   LDRE++ EYN+T+TATD+
Sbjct: 368 LIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDK 427

Query: 428 GTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARI 487
           G PPLS+   I+L ++D+NDN P F  ASY+ ++ ENNP GASI  + A DPD G N  +
Sbjct: 428 GNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLV 487

Query: 488 TYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVS 547
           +Y +     +   LSSYVS+++ +G+++A  +FD+EQ R  +L + A D G P LS+NVS
Sbjct: 488 SYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVS 547

Query: 548 LSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYS 607
           L + V D+NDN P +LYP    +GS   ++ PRSA+ GYLVTKVVAVD DSG NAWLSY 
Sbjct: 548 LRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYH 607

Query: 608 LLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADS 667
           ++++SEPGLF++GL TGEVRTAR L DR+A +QRL+V V+D GQ PLSATV L +  ADS
Sbjct: 608 IVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADS 667

Query: 668 IPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHA 727
           + ++  DL      +DP  + L  +LVVA+A +S +FL  + V+LA+ LR    SR    
Sbjct: 668 LQEIQPDLSDRPTPSDP-QAELQFHLVVALALISVLFL--LAVILAISLRLRCSSRPA-T 723

Query: 728 EGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEK 787
           EG    GV    F  V GV   L TYS      + +  +    S   +    I  E+   
Sbjct: 724 EGYFQPGV---CFKTVPGV---LPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAP 777

Query: 788 SEPLLITQDLLETKGDP-------NLQ-QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 839
            + L       E+  +P       NLQ QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 778 QDLLCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 837

Query: 840 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 899
           NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 838 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 897

Query: 900 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
           NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 898 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929


>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
           [Homo sapiens]
          Length = 927

 Score =  902 bits (2330), Expect = 0.0
 Identities = 489/927 (52%), Positives = 620/927 (66%), Gaps = 32/927 (3%)

Query: 19  LLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALN 78
           LL +     ++QI Y++ EE   GS VG +AKDLGL+ REL  R +R+ +      F ++
Sbjct: 19  LLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE---DYFNVS 75

Query: 79  PRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQR 138
             SG L+  GRIDRE++C R   C    E + E+ + +  V V I D+NDN P F  +  
Sbjct: 76  LESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKGI 135

Query: 139 EIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLER 198
           ++++ E+  PG +F L  A D DV  NSL+ Y +N N YFSL  +   DG KYP L+LE+
Sbjct: 136 DLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEK 195

Query: 199 ALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPVG 258
            LDRE ++ H L+LTA DGGDP  SGT  I I + D NDNAPVF+Q  Y VS++ENVP G
Sbjct: 196 PLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPWG 255

Query: 259 TRLLTVKATDPDEGANGDVTYSFRKVRDKIS-QLFQLNSLSGDITILGGLDYEDSGFYDI 317
           T +L V ATD DEG N ++TY+F  +   IS  LF LN  +GDIT  G LD+E++  Y +
Sbjct: 256 TSVLRVMATDQDEGINAEITYAF--LNSPISTSLFNLNPNTGDITTNGTLDFEETSRYVL 313

Query: 318 DVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSG 377
            VEA DG    A   V + ++DENDNAPEVT  S ++ + E S  GTVIAL  V D DSG
Sbjct: 314 SVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDSG 373

Query: 378 GNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETH 437
            NG+VTC   + +PF LE T  NYY+L+    L+RE+ ++YN+T+ ATD+G P LS+ T 
Sbjct: 374 QNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTS 433

Query: 438 ISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQ 497
           I+L + DINDN P F  ASY  ++ ENNP GASI  ++A DPD G N R++YS+     +
Sbjct: 434 ITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDLE 493

Query: 498 GAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQND 557
              L SYVS++  +G+++A  +FD+EQ R  +L + A D G P LS+NVSL + V D ND
Sbjct: 494 PRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLND 553

Query: 558 NVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLF 617
           N P +LYP    DGS   ++ PR+A+ GYLVTKVVAVD DSG NAWLSY +L++SEPGLF
Sbjct: 554 NAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLF 613

Query: 618 AVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGS 677
           ++GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT TL +  ADS+ +VL DL  
Sbjct: 614 SLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSD 673

Query: 678 LKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEG-------- 729
               +DP  + L  YLVVA+A +S +FL  V + +AL+LRR   S  L  EG        
Sbjct: 674 RPEPSDP-QTELQFYLVVALALISVLFLLAVILAIALRLRR---SSSLDTEGCFQTGLCS 729

Query: 730 SRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSE 789
               GVP +H  G          YS+ + + + S K+   F+  +    +   +     +
Sbjct: 730 KSGPGVPPNHSEGT-------LPYSYNLCIASHSAKTE--FNSLNLTPEMAPPQDLLCDD 780

Query: 790 PLLI---TQDLLETKGDPNL--QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 844
           P ++   + +  +   DP+L   QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT
Sbjct: 781 PSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 840

Query: 845 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 904
           EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT
Sbjct: 841 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 900

Query: 905 NAAGKRDGKAPAGGNGNKKKSGKKEKK 931
           NAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 NAAGKRDGKAPAGGNGNKKKSGKKEKK 927


>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
           [Homo sapiens]
          Length = 930

 Score =  900 bits (2326), Expect = 0.0
 Identities = 481/925 (52%), Positives = 622/925 (67%), Gaps = 25/925 (2%)

Query: 18  LLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFAL 77
           LLL +     +E I YS+ EE  +GSVVGN+AKDLGL+  +++ R +R+ +      F++
Sbjct: 20  LLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH--FSV 77

Query: 78  NPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQ 137
           +  SG L+   RIDRE++C     C   LE ++E+ + I  V V I DVND+ P F  ++
Sbjct: 78  DAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFDKKE 137

Query: 138 REIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLE 197
             +++ E+ + G R  L  A DPD+ +NS++ Y++NSN YFSL V+  +DG KYPEL LE
Sbjct: 138 IHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPELSLE 197

Query: 198 RALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPV 257
           + LDREE+  H L+LTA DGGDP RS TA I I + DTNDN PVF++ EY +S+ EN+P 
Sbjct: 198 KLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSENLPP 257

Query: 258 GTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDI 317
           G+ +L V ATD DEG N ++ Y FR        +F L+  +G I      D+ED   Y +
Sbjct: 258 GSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVERYTM 317

Query: 318 DVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSG 377
           +VEA DG GL  + KV++ +LDENDN+PE+ +TSL+  + E+S PG V+ALF   D D G
Sbjct: 318 EVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDLDFG 377

Query: 378 GNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETH 437
           GNG V C+I  ++PF +  +  NYY+L+T   LDRE+  EYN+T+ ATD+G PPLS+   
Sbjct: 378 GNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSSSRS 437

Query: 438 ISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQ 497
           I+L V DINDN P F   SY  ++ ENNP GASI  ++A DPD G N  I+YS+     +
Sbjct: 438 ITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVASDLE 497

Query: 498 GAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQND 557
              +SSYVS+++ +G+++A  +FD+EQ R   L + A D G P LS+NVSL + V D+ND
Sbjct: 498 PLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGDRND 557

Query: 558 NVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLF 617
           N P +LYP    DGS   ++ PRSA+ GYLVTKVVAVD DSG NAWLSY +L++SEPGLF
Sbjct: 558 NAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLF 617

Query: 618 AVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGS 677
           ++GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT TL +  AD++ ++L DL  
Sbjct: 618 SLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPDLSD 677

Query: 678 LKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRR------WHKSRLLHAEGSR 731
               +DP  + L  YLVVA+A +S +FL  V + +AL+LRR      W      H     
Sbjct: 678 RPVLSDP-QAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWD---CFHPGLCV 733

Query: 732 LAG--VPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSE 789
            +G  VP ++  G         +Y+  ++ T     + L  S P +++       C  S 
Sbjct: 734 KSGPVVPPNYSEG-----TLPYSYNLCIAHTGTKEFNFLKCSVPLHSN---EDMVCSVSP 785

Query: 790 PLLITQ---DLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 846
             LI     + L +  +    QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM
Sbjct: 786 GALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 845

Query: 847 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 906
           LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA
Sbjct: 846 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 905

Query: 907 AGKRDGKAPAGGNGNKKKSGKKEKK 931
           AGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 906 AGKRDGKAPAGGNGNKKKSGKKEKK 930


>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 923

 Score =  900 bits (2326), Expect = 0.0
 Identities = 485/922 (52%), Positives = 615/922 (66%), Gaps = 28/922 (3%)

Query: 19  LLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALN 78
           LL +      EQI Y + EE  +GSVVGN+A DLG + +EL  R +R+ S      F ++
Sbjct: 21  LLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPYFTVS 78

Query: 79  PRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQR 138
             SG L+ + R+DREE+C + P C    E + E+ +    V VEI D+ND+ P F     
Sbjct: 79  AESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSF 138

Query: 139 EIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLER 198
           E++++E+  PG RF L  A D D+G+NSLQ Y+L+ N  FSL ++   DG KYPEL LE+
Sbjct: 139 ELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELALEK 198

Query: 199 ALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPVG 258
            LDRE+++ H LVLTA DGG P  SGT  + I + D NDN PVF +  Y VS+RENVP G
Sbjct: 199 TLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPG 258

Query: 259 TRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDID 318
           T +L V ATD DEG N ++TYSF +      Q+F LNS SG+IT    LD+E++  Y + 
Sbjct: 259 TTVLQVSATDQDEGINSEITYSFYRT----GQIFSLNSKSGEITTQKKLDFEETKEYSMV 314

Query: 319 VEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGG 378
           VE  DG GL A+  V + + DENDN+PEVT  SL   + E++ PGT+IAL  +HD DSG 
Sbjct: 315 VEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDSGE 374

Query: 379 NGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHI 438
           NG V C +   +PF +  +  N Y+L+T  TLDRE+  EYN+T+TATD+G PPLS+   +
Sbjct: 375 NGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSISV 434

Query: 439 SLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQG 498
            L + D+NDN P F  ASY   +PENNP GASI  + A D D G N +++YS+     + 
Sbjct: 435 ILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDLEP 494

Query: 499 APLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDN 558
             L+SYVS+++ +G+++A  +FDYEQ R  +L + A D G P LS+NVSL + V D+NDN
Sbjct: 495 LALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDN 554

Query: 559 VPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLFA 618
            P +LYP    DGS   ++ PR+A+ GYLVTKVVAVD DSG NAWLSY +L++SEPGLF+
Sbjct: 555 APRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFS 614

Query: 619 VGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGSL 678
           +GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT TL +  ADS+ +VL D+   
Sbjct: 615 LGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDR 674

Query: 679 KPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRLA----- 733
              +DP  + L  YLVVA+A +S +FL  V + +AL+LRR             L      
Sbjct: 675 PVPSDP-QAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCVKSGP 733

Query: 734 GVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF----SQPSYADTLISRESCEKSE 789
            VP ++  G          YS+ + + A + K+   F     Q S    ++  +S     
Sbjct: 734 VVPPNYSQGT-------LPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDILCGDSSGALF 785

Query: 790 PLLITQDLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 849
           PL  +    E+   P L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA
Sbjct: 786 PLCNSS---ESTSHPEL-QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 841

Query: 850 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 909
           MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
Sbjct: 842 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 901

Query: 910 RDGKAPAGGNGNKKKSGKKEKK 931
           RDGKAPAGGNGNKKKSGKKEKK
Sbjct: 902 RDGKAPAGGNGNKKKSGKKEKK 923


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,752,003
Number of Sequences: 37866
Number of extensions: 1705004
Number of successful extensions: 10118
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3272
Number of HSP's gapped (non-prelim): 620
length of query: 931
length of database: 18,247,518
effective HSP length: 112
effective length of query: 819
effective length of database: 14,006,526
effective search space: 11471344794
effective search space used: 11471344794
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.

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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.