Guide to the Human Genome
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Name: PCDHGA8 Sequence: fasta or formatted (820aa) NCBI GI: 7662056
Description:

protocadherin gamma subfamily A, 8 isoform 2 precursor

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [932aa] protocadherin gamma subfamily A, 8 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         57           2
 C cysteine            1.0          8           1
 D aspartate           6.6         54           1
 E glutamate           6.3         52           3
 F phenylalanine       2.8         23           1
 G glycine             6.1         50           2
 H histidine           2.2         18           2
 I isoleucine          5.2         43           2
 K lysine              3.4         28           1
 L leucine            12.4        102           3
 M methionine          0.7          6           1
 N asparagine          5.0         41           2
 P proline             5.9         48           2
 Q glutamine           3.9         32           1
 R arginine            5.2         43           2
 S serine              8.8         72           2
 T threonine           5.4         44           1
 V valine              8.7         71           2
 W tryptophan          0.4          3           1
 Y tyrosine            3.0         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin gamma subfamily A, 8 isoform 2 precurso... 
PCDHGA8               0.987   protocadherin gamma subfamily A, 8 isoform 1 precurs...
PCDHGA9               0.759   protocadherin gamma subfamily A, 9 isoform 1 precurs...
PCDHGA9               0.759   protocadherin gamma subfamily A, 9 isoform 2 precurs...
PCDHGA10              0.709   protocadherin gamma subfamily A, 10 isoform 1 precur...
PCDHGA10              0.709   protocadherin gamma subfamily A, 10 isoform 2 precur...
PCDHGA7               0.708   protocadherin gamma subfamily A, 7 isoform 2 precurs...
PCDHGA7               0.706   protocadherin gamma subfamily A, 7 isoform 1 precurs...
PCDHGA6               0.701   protocadherin gamma subfamily A, 6 isoform 2 precurs...
PCDHGA3               0.701   protocadherin gamma subfamily A, 3 isoform 2 precurs...
PCDHGA6               0.700   protocadherin gamma subfamily A, 6 isoform 1 precurs...
PCDHGA4               0.698   protocadherin gamma subfamily A, 4 isoform 2 precurs...
PCDHGA4               0.698   protocadherin gamma subfamily A, 4 isoform 1 precurs...
PCDHGA3               0.696   protocadherin gamma subfamily A, 3 isoform 1 precurs...
PCDHGA5               0.694   protocadherin gamma subfamily A, 5 isoform 2 precurs...
PCDHGA5               0.694   protocadherin gamma subfamily A, 5 isoform 1 precurs...
PCDHGA12              0.682   protocadherin gamma subfamily A, 12 isoform 2 precur...
PCDHGA12              0.682   protocadherin gamma subfamily A, 12 isoform 1 precurs...
PCDHGA11              0.679   protocadherin gamma subfamily A, 11 isoform 2 precur...
PCDHGA11              0.679   protocadherin gamma subfamily A, 11 isoform 1 precur...
PCDHGA1               0.674   protocadherin gamma subfamily A, 1 isoform 1 precurs...
PCDHGA1               0.674   protocadherin gamma subfamily A, 1 isoform 2 precurs...
PCDHGA2               0.672   protocadherin gamma subfamily A, 2 isoform 2 precurs...
PCDHGA2               0.670   protocadherin gamma subfamily A, 2 isoform 1 precurs...
PCDHGA11              0.521   protocadherin gamma subfamily A, 11 isoform 3 precur...
PCDHGB2               0.399   protocadherin gamma subfamily B, 2 isoform 1 precurs...
PCDHGB2               0.399   protocadherin gamma subfamily B, 2 isoform 2 precurs...
PCDHGB5               0.397   protocadherin gamma subfamily B, 5 isoform 2 precurs...
PCDHGB5               0.397   protocadherin gamma subfamily B, 5 isoform 1 precurs...
PCDHGB6               0.396   protocadherin gamma subfamily B, 6 isoform 1 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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