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Search of human proteins with 110556642
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110556642 transmembrane protein 8B isoform a [Homo sapiens]
(472 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110556646 transmembrane protein 8B isoform a [Homo sapiens] 979 0.0
gi|110556642 transmembrane protein 8B isoform a [Homo sapiens] 979 0.0
gi|27552764 transmembrane protein 8B isoform b [Homo sapiens] 566 e-161
gi|157676334 transmembrane protein 8 (five membrane-spanning dom... 421 e-118
gi|122937402 transmembrane protein 8C [Homo sapiens] 117 2e-26
gi|14192943 multiple EGF-like-domains 10 [Homo sapiens] 40 0.006
gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens] 34 0.33
gi|40317626 thrombospondin 1 precursor [Homo sapiens] 33 0.56
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 33 0.56
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 33 0.56
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 33 0.56
gi|15718767 TRAAK [Homo sapiens] 33 0.73
gi|181336739 multiple EGF-like-domains 11 [Homo sapiens] 32 0.96
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 32 1.2
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 32 1.2
gi|61743980 stabilin 2 precursor [Homo sapiens] 32 1.6
gi|116256358 secretory carrier membrane protein 1 [Homo sapiens] 32 1.6
gi|55741655 anoctamin 8 [Homo sapiens] 31 2.1
gi|21450863 attractin isoform 2 [Homo sapiens] 31 2.1
gi|21450861 attractin isoform 1 [Homo sapiens] 31 2.1
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 31 2.1
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 31 2.1
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 31 2.1
gi|170016091 odz, odd Oz/ten-m homolog 2 [Homo sapiens] 31 2.1
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 31 2.1
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 31 2.1
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] 31 2.1
gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens] 31 2.8
gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens] 31 2.8
gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens] 31 2.8
>gi|110556646 transmembrane protein 8B isoform a [Homo sapiens]
Length = 472
Score = 979 bits (2530), Expect = 0.0
Identities = 472/472 (100%), Positives = 472/472 (100%)
Query: 1 MNMPQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPS 60
MNMPQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPS
Sbjct: 1 MNMPQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPS 60
Query: 61 VALPPERPAVFAMRLLPVLDSGGVLSLELQLNASSVRQENVTVFGCLTHEVPLSLGDAAV 120
VALPPERPAVFAMRLLPVLDSGGVLSLELQLNASSVRQENVTVFGCLTHEVPLSLGDAAV
Sbjct: 61 VALPPERPAVFAMRLLPVLDSGGVLSLELQLNASSVRQENVTVFGCLTHEVPLSLGDAAV 120
Query: 121 TCSKESLAGFLLSVSATTRVARLRIPFPQTGTWFLALRSLCGVGPRFVRCRNATAEVRMR 180
TCSKESLAGFLLSVSATTRVARLRIPFPQTGTWFLALRSLCGVGPRFVRCRNATAEVRMR
Sbjct: 121 TCSKESLAGFLLSVSATTRVARLRIPFPQTGTWFLALRSLCGVGPRFVRCRNATAEVRMR 180
Query: 181 TFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLC 240
TFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLC
Sbjct: 181 TFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLC 240
Query: 241 LSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFL 300
LSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFL
Sbjct: 241 LSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFL 300
Query: 301 GSLMSVWVTVIAMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATA 360
GSLMSVWVTVIAMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATA
Sbjct: 301 GSLMSVWVTVIAMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATA 360
Query: 361 WTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGS 420
WTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGS
Sbjct: 361 WTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGS 420
Query: 421 VGFLLPPRAKTDHGVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS 472
VGFLLPPRAKTDHGVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS
Sbjct: 421 VGFLLPPRAKTDHGVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS 472
>gi|110556642 transmembrane protein 8B isoform a [Homo sapiens]
Length = 472
Score = 979 bits (2530), Expect = 0.0
Identities = 472/472 (100%), Positives = 472/472 (100%)
Query: 1 MNMPQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPS 60
MNMPQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPS
Sbjct: 1 MNMPQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPS 60
Query: 61 VALPPERPAVFAMRLLPVLDSGGVLSLELQLNASSVRQENVTVFGCLTHEVPLSLGDAAV 120
VALPPERPAVFAMRLLPVLDSGGVLSLELQLNASSVRQENVTVFGCLTHEVPLSLGDAAV
Sbjct: 61 VALPPERPAVFAMRLLPVLDSGGVLSLELQLNASSVRQENVTVFGCLTHEVPLSLGDAAV 120
Query: 121 TCSKESLAGFLLSVSATTRVARLRIPFPQTGTWFLALRSLCGVGPRFVRCRNATAEVRMR 180
TCSKESLAGFLLSVSATTRVARLRIPFPQTGTWFLALRSLCGVGPRFVRCRNATAEVRMR
Sbjct: 121 TCSKESLAGFLLSVSATTRVARLRIPFPQTGTWFLALRSLCGVGPRFVRCRNATAEVRMR 180
Query: 181 TFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLC 240
TFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLC
Sbjct: 181 TFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLC 240
Query: 241 LSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFL 300
LSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFL
Sbjct: 241 LSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFL 300
Query: 301 GSLMSVWVTVIAMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATA 360
GSLMSVWVTVIAMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATA
Sbjct: 301 GSLMSVWVTVIAMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATA 360
Query: 361 WTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGS 420
WTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGS
Sbjct: 361 WTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGS 420
Query: 421 VGFLLPPRAKTDHGVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS 472
VGFLLPPRAKTDHGVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS
Sbjct: 421 VGFLLPPRAKTDHGVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS 472
>gi|27552764 transmembrane protein 8B isoform b [Homo sapiens]
Length = 338
Score = 566 bits (1459), Expect = e-161
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 1 MNMPQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPS 60
MNMPQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPS
Sbjct: 1 MNMPQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPS 60
Query: 61 VALPPERPAVFAMRLLPVLDSGGVLSLELQLNASSVRQENVTVFGCLTHEVPLSLGDAAV 120
VALPPERPAVFAMRLLPVLDSGGVLSLELQLNASSVRQENVTVFGCLTHEVPLSLGDAAV
Sbjct: 61 VALPPERPAVFAMRLLPVLDSGGVLSLELQLNASSVRQENVTVFGCLTHEVPLSLGDAAV 120
Query: 121 TCSKESLAGFLLSVSATTRVARLRIPFPQTGTWFLALRSLCGVGPRFVRCRNATAEVRMR 180
TCSKESLAGFLLSVSATTRVARLRIPFPQTGTWFLALRSLCGVGPRFVRCRNATAEVRMR
Sbjct: 121 TCSKESLAGFLLSVSATTRVARLRIPFPQTGTWFLALRSLCGVGPRFVRCRNATAEVRMR 180
Query: 181 TFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLC 240
TFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLC
Sbjct: 181 TFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLC 240
Query: 241 LSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFST 273
LSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFST
Sbjct: 241 LSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFST 273
>gi|157676334 transmembrane protein 8 (five membrane-spanning
domains) [Homo sapiens]
Length = 771
Score = 421 bits (1083), Expect = e-118
Identities = 208/447 (46%), Positives = 283/447 (63%), Gaps = 10/447 (2%)
Query: 12 LPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVF 71
L P P G SP C P R ++D SVHF SV + + P+V
Sbjct: 329 LSPSPDHQDLGRSGRVDRSP--FCLTNYPVTREDMDVVSVHFQPLDRVSVRVCSDTPSVM 386
Query: 72 AMRLLPVLDSGGVLSLELQLNASSVRQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFL 131
+RL +DSGG L++ L+ N + +R E V V C+ P + ++ C+ G+
Sbjct: 387 RLRLNTGMDSGGSLTISLRANKTEMRNETVVV-ACVNAASPFLGFNTSLNCTTAFFQGYP 445
Query: 132 LSVSATTRVARLRIPFPQTGTWFLALRSLCGVGPRFVRCRNATAEVRMRTFLSPCVDDCG 191
LS+SA +R A L IP+P+T W+L+L+ +C C A V +L PC++DCG
Sbjct: 446 LSLSAWSRRANLIIPYPETDNWYLSLQLMCPENAE--DCEQAVVHVETTLYLVPCLNDCG 503
Query: 192 PYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVV 251
PYGQC LLR H+YLYA+C CKAGWRGW CTD++ A T Q +TLLL LSNLMFL P+
Sbjct: 504 PYGQCLLLRRHSYLYASCSCKAGWRGWSCTDNSTAQTVAQQRAATLLLTLSNLMFLAPIA 563
Query: 252 LAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVI 311
+++R +++EA+VY +TMFFSTFYHACDQPG V CI+ YD LQ+CDFLGS ++WVT++
Sbjct: 564 VSVRRFFLVEASVYAYTMFFSTFYHACDQPGEAVLCILSYDTLQYCDFLGSGAAIWVTIL 623
Query: 312 AMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWTVRSVRRRHC 371
MARL+ V+K VL+LLG ++++M+LQLDR G+WN+LGP LFA I+A+ W R RR C
Sbjct: 624 CMARLKTVLKYVLFLLGTLVIAMSLQLDRRGMWNMLGPCLFAFVIMASMWAYRCGHRRQC 683
Query: 372 YPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGSVGFLLPPRAKT 431
YP +W+RW FYL PG +A + +Y + T DNY+Y HSIWH+L+AGS LLPP
Sbjct: 684 YPTSWQRWAFYLLPGVSMASVGIAIYTSMMTSDNYYYTHSIWHILLAGSAALLLPP---P 740
Query: 432 DHGVPSGARAR--GCGYQLCINEQEEL 456
D A ++ C YQ+C N++EEL
Sbjct: 741 DQPAEPWACSQKFPCHYQICKNDREEL 767
>gi|122937402 transmembrane protein 8C [Homo sapiens]
Length = 221
Score = 117 bits (293), Expect = 2e-26
Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 3/220 (1%)
Query: 230 GFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIM 289
G + LL LS+L FLP V +A + R+ +EA VY FT+FF +HAC+ PG+ V C M
Sbjct: 2 GTLVAKLLLPTLSSLAFLPTVSIAAKRRFHMEAMVYLFTLFFVALHHACNGPGLSVLCFM 61
Query: 290 DYDVLQFCDFLGSLMSVWVTVIAMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGP 349
+D+L++ G+ +S+WV+++A+A + + G + +++ + DR G GP
Sbjct: 62 RHDILEYFSVYGTALSMWVSLMALADFDEPKRSTFVMFGVLTIAVRIYHDRWGYGVYSGP 121
Query: 350 SLFALGILATAWTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYI 409
A+ I+A W + ++ YP + + PG A++L F E D Y Y+
Sbjct: 122 IGTAILIIAAKWLQKMKEKKGLYPDK-SVYTQQIGPGLCFGALALMLRFFFEDWD-YTYV 179
Query: 410 HSIWHMLIAGSVGFLLPPRAKTDHGVPSGARARGCGYQLC 449
HS +H +A S LL P+ G P C C
Sbjct: 180 HSFYHCALAMSFVLLL-PKVNKKAGSPGTPAKLDCSTLCC 218
>gi|14192943 multiple EGF-like-domains 10 [Homo sapiens]
Length = 1140
Score = 39.7 bits (91), Expect = 0.006
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 190 CGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYG 230
C QCK N + AC C AG+RGW C D + TYG
Sbjct: 148 CTSRCQCKNGALCNPITGACHCAAGFRGWRCEDRCEQGTYG 188
Score = 32.3 bits (72), Expect = 0.96
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 161 CGVGPRFVRCRNATAEVRMRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGC 220
C G + + C + + T+ C CG CK + + +C CKAGW G C
Sbjct: 430 CAPGFKGIDC---STPCPLGTYGINCSSRCG----CKNDAVCSPVDGSCTCKAGWHGVDC 482
Query: 221 TDSADALTYGF 231
+ + T+GF
Sbjct: 483 SIRCPSGTWGF 493
Score = 29.6 bits (65), Expect = 6.2
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 186 CVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYG 230
C D C +G+C T C+C+ GW G C+ + D +G
Sbjct: 109 CADKC-VHGRCIAPNT-------CQCEPGWGGTNCSSACDGDHWG 145
Score = 29.3 bits (64), Expect = 8.1
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 190 CGPYGQCKLLRTHNY--LYAACECKAGWRGWGCTDSADALTYG 230
C C L TH+ + C CK GW G C ++ YG
Sbjct: 364 CDKRCPCHLENTHSCHPMSGECACKPGWSGLYCNETCSPGFYG 406
Score = 29.3 bits (64), Expect = 8.1
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 189 DCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGF 231
DC QC+ +++ C C+ G+ G C + TYG+
Sbjct: 754 DCALICQCQNGADCDHISGQCTCRTGFMGRHCEQKCPSGTYGY 796
>gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens]
Length = 362
Score = 33.9 bits (76), Expect = 0.33
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 4 PQSLGNQPLPPEPPSLGTPAEGPGTTS----PPEHCWPVRPTLRNELDTFSVHFYIFFGP 59
P PP P +LG A GPG + +H VRP LR F GP
Sbjct: 98 PSEASGAQYPPPPETLGAYAGGPGLVAGLLGSEDHSGWVRPALRARAPD------AFVGP 151
Query: 60 SVALPPERPAVFAMRLLPVLDSGG 83
++A P P A+ L PV G
Sbjct: 152 ALA-PAPAPEPKALALQPVYPGPG 174
>gi|40317626 thrombospondin 1 precursor [Homo sapiens]
Length = 1170
Score = 33.1 bits (74), Expect = 0.56
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 172 NATAEVRMRTFLSPCVD---DCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALT 228
+ATA ++ +PC D DC +C L ++ CECK G+ G G D
Sbjct: 636 HATANKQVCKPRNPCTDGTHDCNKNAKCNYLGHYSDPMYRCECKPGYAGNGIICGEDTDL 695
Query: 229 YGFQLLSTLLLCLSNLMF 246
G+ + L+C++N +
Sbjct: 696 DGWP--NENLVCVANATY 711
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 33.1 bits (74), Expect = 0.56
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 1 MNMPQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNE--LDTFSVHFYIFFG 58
++ P+S PLPP+ PS G P P +TS +R ++ D + FY F
Sbjct: 407 VDSPRSGPRPPLPPDRPSAGAPPPPPPSTS-------IRNGFQDSPCEDEWESRFY--FH 457
Query: 59 PSVALPPERPAVFAMRLLP 77
P LPP P V + P
Sbjct: 458 PISDLPPPEPYVQTTKSYP 476
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 33.1 bits (74), Expect = 0.56
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 1 MNMPQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNE--LDTFSVHFYIFFG 58
++ P+S PLPP+ PS G P P +TS +R ++ D + FY F
Sbjct: 407 VDSPRSGPRPPLPPDRPSAGAPPPPPPSTS-------IRNGFQDSPCEDEWESRFY--FH 457
Query: 59 PSVALPPERPAVFAMRLLP 77
P LPP P V + P
Sbjct: 458 PISDLPPPEPYVQTTKSYP 476
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 33.1 bits (74), Expect = 0.56
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 4 PQSLGNQPLPPEPPSLGTPAEGPGT---TSPP--EHCWPVRPTLRNELDTFSVHFYIFFG 58
P+ P PP P +G+P P T SPP H P RP+L F F
Sbjct: 2118 PEKEAQSPSPPHPIPMGSPTLWPETEAHVSPPLDSHLGPARPSLDFPASAFG------FS 2171
Query: 59 PSVALPPERPAVFAMRLLP 77
PP+ P+ R P
Sbjct: 2172 SLQPAPPQLPSPAEPRSAP 2190
>gi|15718767 TRAAK [Homo sapiens]
Length = 393
Score = 32.7 bits (73), Expect = 0.73
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 10 QPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELD 47
QPL P PP P P + SPPE P P + LD
Sbjct: 301 QPLLPPPPCPAQPLGRPRSPSPPEKAQPPSPPTASALD 338
>gi|181336739 multiple EGF-like-domains 11 [Homo sapiens]
Length = 1044
Score = 32.3 bits (72), Expect = 0.96
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 190 CGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYG 230
C QC+ N + AC C AG+RGW C + T+G
Sbjct: 142 CSNRCQCQNGALCNPITGACVCAAGFRGWRCEELCAPGTHG 182
Score = 30.8 bits (68), Expect = 2.8
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 189 DCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSN 243
DCG QC+ + +++ C C+ G+ G C T+G+ L C++N
Sbjct: 748 DCGRVCQCQNGASCDHISGKCTCRTGFTGQHCEQRCAPGTFGYG-CQQLCECMNN 801
Score = 30.4 bits (67), Expect = 3.6
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 181 TFLSPCVDDCGPY--GQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQ 232
TF C DC + GQC +++ C C AG+ G C + ++GFQ
Sbjct: 266 TFGQNCSQDCPCHHGGQC------DHVTGQCHCTAGYMGDRCQEECPFGSFGFQ 313
Score = 29.3 bits (64), Expect = 8.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 189 DCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYG 230
+C C T + + +C CK GW+G CT + T+G
Sbjct: 445 NCSSICSCNNGGTCSPVDGSCTCKEGWQGLDCTLPCPSGTWG 486
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 32.0 bits (71), Expect = 1.2
Identities = 26/66 (39%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 4 PQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVAL 63
PQS G P P P L PA PG T+P P + T N HFY PS A
Sbjct: 5 PQSTGPPPAPS--PGLPQPAFPPGQTAPVVFSTP-QATQMNTPSQPRQHFY----PSRAQ 57
Query: 64 PPERPA 69
PP A
Sbjct: 58 PPSSAA 63
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 32.0 bits (71), Expect = 1.2
Identities = 26/66 (39%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 4 PQSLGNQPLPPEPPSLGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVAL 63
PQS G P P P L PA PG T+P P + T N HFY PS A
Sbjct: 5 PQSTGPPPAPS--PGLPQPAFPPGQTAPVVFSTP-QATQMNTPSQPRQHFY----PSRAQ 57
Query: 64 PPERPA 69
PP A
Sbjct: 58 PPSSAA 63
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 31.6 bits (70), Expect = 1.6
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 161 CGVGPRFVRCRNATAEVRMRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWG- 219
C VG R V C NAT E C C C T++ A+C+C AG++G G
Sbjct: 1418 CDVGWRGVHCDNATTE-------DNCNGTCHTSANC---LTNSDGTASCKCAAGFQGNGT 1467
Query: 220 -CT 221
CT
Sbjct: 1468 ICT 1470
>gi|116256358 secretory carrier membrane protein 1 [Homo sapiens]
Length = 338
Score = 31.6 bits (70), Expect = 1.6
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 214 GWRGWGCTDSADALTYGFQLLSTLLLC-LSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFS 272
G W C DSA A+ +G +L LL S + + P+ A RS +++ F FF
Sbjct: 169 GCLAWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRS----DSSFRFFVFFF- 223
Query: 273 TFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVVKQVLYLLGAM-- 330
V C VLQ F W++ + V ++ ++ A+
Sbjct: 224 -----------VYICQFAVHVLQAAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFT 272
Query: 331 ---LLSMALQLDRHGLWNLLGPSL------FALGILA 358
++S+ + HGL+ G S FA G+++
Sbjct: 273 ASAVISLVMFKKVHGLYRTTGASFEKAQQEFATGVMS 309
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 31.2 bits (69), Expect = 2.1
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 6 SLGNQPLPPEPPSLGTPAEGPG-TTSPPEHCWP 37
SL PLPP L TPA P + SP CWP
Sbjct: 1196 SLPPPPLPPTSDPLETPAPSPSPSPSPQAVCWP 1228
>gi|21450863 attractin isoform 2 [Homo sapiens]
Length = 1272
Score = 31.2 bits (69), Expect = 2.1
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 186 CVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGC 220
C ++C G+CK+ + + + CEC W+G C
Sbjct: 250 CPNNCSGRGECKISNSSDTV--ECECSENWKGEAC 282
>gi|21450861 attractin isoform 1 [Homo sapiens]
Length = 1429
Score = 31.2 bits (69), Expect = 2.1
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 186 CVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGC 220
C ++C G+CK+ + + + CEC W+G C
Sbjct: 250 CPNNCSGRGECKISNSSDTV--ECECSENWKGEAC 282
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 31.2 bits (69), Expect = 2.1
Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 8 GNQPLPPEPPSLGTP----AEGPGTTSPP 32
G PLPP PPS TP GP T SPP
Sbjct: 794 GLPPLPPPPPSGATPPPIAPTGPPTASPP 822
>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
Length = 434
Score = 31.2 bits (69), Expect = 2.1
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 6 SLGNQPLPPEPPS-------LGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFG 58
+L +Q L P P S G PA P +PP P P L E+ S
Sbjct: 315 TLSSQALQPRPVSQQELVAPAGAPAAPPTNAAPPAAPPPPPPHLTPEITPLSAALAQTIA 374
Query: 59 PSVALPPERPAVFAMRLLPV 78
+A PP A A+ + PV
Sbjct: 375 QGMAPPPVSMAPVAVSVAPV 394
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 31.2 bits (69), Expect = 2.1
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 11 PLPPEPPS---LGTPAEGPGTTSPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPER 67
P P E PS L TP EGPGT+ P + +++ D GPS ++PP
Sbjct: 190 PTPDEGPSTSVLPTPGEGPGTSVPLAATEGLSTSVQATPDE---------GPSTSVPPTA 240
Query: 68 PAVFAMRLLPVLDSG 82
+ + P D G
Sbjct: 241 TEGLSTPVPPTRDEG 255
>gi|170016091 odz, odd Oz/ten-m homolog 2 [Homo sapiens]
Length = 2765
Score = 31.2 bits (69), Expect = 2.1
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 186 CVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGC 220
C DCG +G C + AC C+ GW G C
Sbjct: 739 CSVDCGTHGVC--------IGGACRCEEGWTGAAC 765
Score = 30.0 bits (66), Expect = 4.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 186 CVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGC 220
C D C G+C L + C C+ GWRG GC
Sbjct: 801 CPDLCNGNGRCTLGQNS----WQCVCQTGWRGPGC 831
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 31.2 bits (69), Expect = 2.1
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 148 PQTGT-------WFLALRSLCGVGPRFVRCRNATAEVRMRTFLSPCVDDCGPYGQCKLLR 200
PQTG W + + C ++ + R RTF + C C QC R
Sbjct: 195 PQTGACLCHAGWWGRSCNNQCACNSSPCEQQSGRCQCRERTFGARCDRYC----QCFRGR 250
Query: 201 THNYLYAACECKAGWRGWGCTDSADALTYG 230
H + C C+ G+RG C + A YG
Sbjct: 251 CHP-VDGTCACEPGYRGKYCREPCPAGFYG 279
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 31.2 bits (69), Expect = 2.1
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 148 PQTGT-------WFLALRSLCGVGPRFVRCRNATAEVRMRTFLSPCVDDCGPYGQCKLLR 200
PQTG W + + C ++ + R RTF + C C QC R
Sbjct: 195 PQTGACLCHAGWWGRSCNNQCACNSSPCEQQSGRCQCRERTFGARCDRYC----QCFRGR 250
Query: 201 THNYLYAACECKAGWRGWGCTDSADALTYG 230
H + C C+ G+RG C + A YG
Sbjct: 251 CHP-VDGTCACEPGYRGKYCREPCPAGFYG 279
>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
Length = 1541
Score = 31.2 bits (69), Expect = 2.1
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 190 CGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLS 235
C QC+ +++ AC C AGWRG C + A +G S
Sbjct: 913 CEQRCQCQHGAACDHVSGACTCPAGWRGTFCEHACPAGFFGLDCRS 958
>gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens]
Length = 2725
Score = 30.8 bits (68), Expect = 2.8
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 186 CVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCT 221
C C +GQCK CEC GW G CT
Sbjct: 726 CHSHCTEHGQCK--------DGKCECSPGWEGDHCT 753
>gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens]
Length = 2731
Score = 30.8 bits (68), Expect = 2.8
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 186 CVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCT 221
C C +GQCK CEC GW G CT
Sbjct: 725 CHSHCTEHGQCK--------DGKCECSPGWEGDHCT 752
>gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens]
Length = 2732
Score = 30.8 bits (68), Expect = 2.8
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 186 CVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCT 221
C C +GQCK CEC GW G CT
Sbjct: 726 CHSHCTEHGQCK--------DGKCECSPGWEGDHCT 753
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.140 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,350,457
Number of Sequences: 37866
Number of extensions: 963792
Number of successful extensions: 6196
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 5989
Number of HSP's gapped (non-prelim): 247
length of query: 472
length of database: 18,247,518
effective HSP length: 106
effective length of query: 366
effective length of database: 14,233,722
effective search space: 5209542252
effective search space used: 5209542252
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.