Guide to the Human Genome
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Name: C20orf54 Sequence: fasta or formatted (469aa) NCBI GI: 156564359
Description:

hypothetical protein LOC113278

Referenced in:

G-Protein-coupled Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         37           2
 C cysteine            3.6         17           2
 D aspartate           2.1         10           1
 E glutamate           3.4         16           2
 F phenylalanine       5.8         27           2
 G glycine             7.0         33           2
 H histidine           2.6         12           2
 I isoleucine          3.2         15           2
 K lysine              0.4          2           1
 L leucine            17.7         83           3
 M methionine          3.4         16           2
 N asparagine          2.8         13           1
 P proline             6.4         30           1
 Q glutamine           2.3         11           1
 R arginine            2.8         13           1
 S serine              8.5         40           2
 T threonine           5.3         25           2
 V valine             10.2         48           2
 W tryptophan          1.9          9           1
 Y tyrosine            2.6         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC113278 
GPR172A               0.308   G protein-coupled receptor 172A 
GPR172B               0.298   G protein-coupled receptor 172B 
GPR172B               0.298   G protein-coupled receptor 172B 
SLC29A2               0.012   solute carrier family 29 (nucleoside transporters), ...
SLC35F1               0.008   solute carrier family 35, member F1 
TMEM99                0.008   transmembrane protein 99 
AMBRA1                0.007   activating molecule in beclin-1-regulated autophagy ...
F2RL3                 0.005   coagulation factor II (thrombin) receptor-like 3 pre...
SLCO2B1               0.005   solute carrier organic anion transporter family, me...
SLCO2B1               0.005   solute carrier organic anion transporter family, me...
SLCO2B1               0.005   solute carrier organic anion transporter family, memb...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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