Guide to the Human Genome
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Name: EDN1 Sequence: fasta or formatted (212aa) NCBI GI: 154800437
Description:

endothelin 1

Referenced in:

Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         11           1
 C cysteine            5.2         11           1
 D aspartate           4.2          9           1
 E glutamate           7.1         15           2
 F phenylalanine       2.4          5           1
 G glycine             5.7         12           2
 H histidine           3.3          7           1
 I isoleucine          2.8          6           2
 K lysine              9.9         21           2
 L leucine             8.5         18           2
 M methionine          2.4          5           1
 N asparagine          4.2          9           2
 P proline             5.2         11           2
 Q glutamine           3.3          7           2
 R arginine            9.0         19           2
 S serine              8.5         18           2
 T threonine           3.8          8           1
 V valine              4.7         10           2
 W tryptophan          2.4          5           1
 Y tyrosine            2.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   endothelin 1 
EDN2                  0.164   endothelin 2 preproprotein 
EDN3                  0.150   endothelin 3 isoform 1 preproprotein 
EDN3                  0.150   endothelin 3 isoform 2 preproprotein 
EDN3                  0.150   endothelin 3 isoform 1 preproprotein 
EDN3                  0.146   endothelin 3 isoform 3 preproprotein 
MTMR15                0.023   myotubularin related protein 15 isoform b 
MTMR15                0.023   myotubularin related protein 15 isoform b 
MTMR15                0.023   myotubularin related protein 15 isoform b 
MTMR15                0.023   myotubularin related protein 15 isoform a 
CCDC19                0.016   nasopharyngeal epithelium specific protein 1 
DNAJC8                0.016   DnaJ (Hsp40) homolog, subfamily C, member 8 
CCDC49                0.014   coiled-coil domain containing 49 
FAM105B               0.014   hypothetical protein LOC90268 
BAZ1B                 0.012   bromodomain adjacent to zinc finger domain, 1B [Homo...
PPP5C                 0.009   protein phosphatase 5, catalytic subunit 
LOC283685             0.007   PREDICTED: golgi autoantigen, golgin subfamily a-li...
SGK269                0.007   NKF3 kinase family member 
CYTH1                 0.007   cytohesin 1 isoform 2 
CYTH1                 0.007   cytohesin 1 isoform 1 
SYCP2                 0.007   synaptonemal complex protein 2 
MPZ                   0.007   myelin protein zero 
PCDHA9                0.007   protocadherin alpha 9 isoform 1 precursor 
CYTH2                 0.007   cytohesin 2 isoform 2 
CYTH2                 0.007   cytohesin 2 isoform 1 
ZNF646                0.007   zinc finger protein 646 
PCDHGA11              0.005   protocadherin gamma subfamily A, 11 isoform 3 precur...
FAM124A               0.005   hypothetical protein LOC220108 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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