Search of human proteins with 154426280

Search of human proteins with 154426280

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|154426280 V-set and immunoglobulin domain containing 4
isoform 2 [Homo sapiens]
         (305 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|154426280 V-set and immunoglobulin domain containing 4 isofor...   625   e-179
gi|6005958 V-set and immunoglobulin domain containing 4 isoform ...   343   1e-94
gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo sap...    46   4e-05
gi|30794472 hyaluronan and proteoglycan link protein 4 [Homo sap...    42   7e-04
gi|11386199 poliovirus receptor-related 3 [Homo sapiens]               41   0.001
gi|5031561 transmembrane glycoprotein A33 precursor [Homo sapiens]     40   0.003
gi|166197658 butyrophilin, subfamily 1, member A1 [Homo sapiens]       40   0.003
gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo sapi...    39   0.004
gi|30179909 paired immunoglobulin-like type 2 receptor alpha iso...    36   0.037
gi|68223315 CD47 antigen isoform 3 precursor [Homo sapiens]            35   0.11 
gi|38683836 CD47 antigen isoform 2 precursor [Homo sapiens]            35   0.11 
gi|4502673 CD47 antigen isoform 1 precursor [Homo sapiens]             35   0.11 
gi|189571583 intercellular adhesion molecule 5 precursor [Homo s...    35   0.11 
gi|13376115 adipocyte-specific adhesion molecule [Homo sapiens]        35   0.11 
gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo...    35   0.11 
gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo...    35   0.11 
gi|99028881 V-set domain containing T cell activation inhibitor ...    34   0.14 
gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4 pr...    34   0.14 
gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4 p...    34   0.14 
gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5 pr...    34   0.14 
gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2 pr...    34   0.14 
gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3 p...    34   0.14 
gi|56788387 myelin oligodendrocyte glycoprotein isoform beta3 pr...    34   0.14 
gi|56788385 myelin oligodendrocyte glycoprotein isoform beta1 pr...    34   0.14 
gi|56788383 myelin oligodendrocyte glycoprotein isoform alpha2 p...    34   0.14 
gi|56788381 myelin oligodendrocyte glycoprotein isoform alpha1 p...    34   0.14 
gi|42560233 poliovirus receptor-related 1 isoform 3 [Homo sapiens]     34   0.18 
gi|42560231 poliovirus receptor-related 1 isoform 2 [Homo sapiens]     34   0.18 
gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo sapiens]     34   0.18 
gi|148743776 V-set and transmembrane domain containing 2 [Homo s...    32   0.54 

>gi|154426280 V-set and immunoglobulin domain containing 4 isoform 2
           [Homo sapiens]
          Length = 305

 Score =  625 bits (1613), Expect = e-179
 Identities = 305/305 (100%), Positives = 305/305 (100%)

Query: 1   MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR 60
           MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
Sbjct: 1   MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR 60

Query: 61  GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP 120
           GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
Sbjct: 61  GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP 120

Query: 121 DGNQVVRDKITELRVQKHSSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGET 180
           DGNQVVRDKITELRVQKHSSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGET
Sbjct: 121 DGNQVVRDKITELRVQKHSSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGET 180

Query: 181 SAGPGKSLPVFAIILIISLCCMVVFTMAYIMLCRKTSQQEHVYEAARAHAREANDSGETM 240
           SAGPGKSLPVFAIILIISLCCMVVFTMAYIMLCRKTSQQEHVYEAARAHAREANDSGETM
Sbjct: 181 SAGPGKSLPVFAIILIISLCCMVVFTMAYIMLCRKTSQQEHVYEAARAHAREANDSGETM 240

Query: 241 RVAIFASGCSSDEPTSQNLGNNYSDEPCIGQEYQIIAQINGNYARLLDTVPLDYEFLATE 300
           RVAIFASGCSSDEPTSQNLGNNYSDEPCIGQEYQIIAQINGNYARLLDTVPLDYEFLATE
Sbjct: 241 RVAIFASGCSSDEPTSQNLGNNYSDEPCIGQEYQIIAQINGNYARLLDTVPLDYEFLATE 300

Query: 301 GKSVC 305
           GKSVC
Sbjct: 301 GKSVC 305


>gi|6005958 V-set and immunoglobulin domain containing 4 isoform 1
           [Homo sapiens]
          Length = 399

 Score =  343 bits (880), Expect = 1e-94
 Identities = 169/171 (98%), Positives = 169/171 (98%)

Query: 135 VQKHSSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAII 194
           V K SSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAII
Sbjct: 229 VVKDSSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAII 288

Query: 195 LIISLCCMVVFTMAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEP 254
           LIISLCCMVVFTMAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEP
Sbjct: 289 LIISLCCMVVFTMAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEP 348

Query: 255 TSQNLGNNYSDEPCIGQEYQIIAQINGNYARLLDTVPLDYEFLATEGKSVC 305
           TSQNLGNNYSDEPCIGQEYQIIAQINGNYARLLDTVPLDYEFLATEGKSVC
Sbjct: 349 TSQNLGNNYSDEPCIGQEYQIIAQINGNYARLLDTVPLDYEFLATEGKSVC 399



 Score =  286 bits (732), Expect = 2e-77
 Identities = 138/139 (99%), Positives = 138/139 (99%)

Query: 1   MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR 60
           MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
Sbjct: 1   MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR 60

Query: 61  GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP 120
           GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
Sbjct: 61  GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP 120

Query: 121 DGNQVVRDKITELRVQKHS 139
           DGNQVVRDKITELRVQK S
Sbjct: 121 DGNQVVRDKITELRVQKLS 139


>gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo
           sapiens]
          Length = 360

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 17/105 (16%)

Query: 22  ILEVPESVTGPWKG-DVNLPCTY---DPLQGYTQVLVKW--LVQRGSDP----VTIFLRD 71
           ++E PE     ++G  V LPC Y     L    +V VKW  L + G+      V I LR 
Sbjct: 50  VVETPEETLFTYQGASVILPCRYRYEPALVSPRRVRVKWWKLSENGAPEKDVLVAIGLRH 109

Query: 72  SS-GDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEV 115
            S GD      YQGR+H+      DVSL++  L ++D   Y CEV
Sbjct: 110 RSFGD------YQGRVHLRQDKEHDVSLEIQDLRLEDYGRYRCEV 148


>gi|30794472 hyaluronan and proteoglycan link protein 4 [Homo
           sapiens]
          Length = 402

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 3/105 (2%)

Query: 26  PESVTGPWKGDVNLPCTYD---PLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKY 82
           P  V     G + LPC Y       G+  V +KW         T         H     Y
Sbjct: 53  PGQVVSHRGGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTDVFVALGPQHRAFGSY 112

Query: 83  QGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDGNQVVR 127
           +GR  +    PGD SL L  + + D   Y CEVT +  D   +V+
Sbjct: 113 RGRAELQGDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVK 157


>gi|11386199 poliovirus receptor-related 3 [Homo sapiens]
          Length = 549

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 12/195 (6%)

Query: 3   ILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQRGS 62
           +L  LLL   L     G PI+  P  VT  W  +V+L C  +  +  TQ+   W    G 
Sbjct: 42  LLFPLLLFSRLCGALAG-PIIVEPH-VTAVWGKNVSLKCLIEVNETITQI--SWEKIHGK 97

Query: 63  DPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDG 122
              T+ +         Q +YQGR+   +    D ++ L  +   D   Y C+     P G
Sbjct: 98  SSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGKYICKAV-TFPLG 156

Query: 123 NQVVRDKITEL-----RVQKHSSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYL 177
           N      +T L      + K    L+    E  T     + AT       DW  D+    
Sbjct: 157 NAQSSTTVTVLVEPTVSLIKGPDSLIDGGNE--TVAAICIAATGKPVAHIDWEGDLGEME 214

Query: 178 GETSAGPGKSLPVFA 192
             T++ P ++  + +
Sbjct: 215 STTTSFPNETATIIS 229


>gi|5031561 transmembrane glycoprotein A33 precursor [Homo sapiens]
          Length = 319

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 4   LLGLLLLGHLTVDTYGRPILEVPESVTGPWKG-DVNLPCTYDPLQGYTQVLVKW--LVQR 60
           +L  L    +TVD      +E P+ V    +G  V LPCTY       + L++W  L+  
Sbjct: 8   VLWTLCAVRVTVDAIS---VETPQDVLRASQGKSVTLPCTYHTSTSSREGLIQWDKLLLT 64

Query: 61  GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKV-PGDVSLQLSTLEMDDRSHYTCEVTWQT 119
            ++ V I+   S+ ++I    Y+ R+ +S+     D S+ +  L M D   Y C V+  +
Sbjct: 65  HTERVVIW-PFSNKNYIHGELYKNRVSISNNAEQSDASITIDQLTMADNGTYECSVSLMS 123

Query: 120 P-DGNQVVRDKITEL 133
             +GN   R ++  L
Sbjct: 124 DLEGNTKSRVRLLVL 138


>gi|166197658 butyrophilin, subfamily 1, member A1 [Homo sapiens]
          Length = 526

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 2/147 (1%)

Query: 4   LLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQRGSD 63
           LL L+LL    +D+    ++  PE +      D  LPC   P      + ++W  ++ S 
Sbjct: 13  LLTLILLQLPKLDSAPFDVIGPPEPILAVVGEDAELPCRLSPNASAEHLELRWFRKKVSP 72

Query: 64  PVTIFLRDSSGDHIQQAKYQGRLHVSHK--VPGDVSLQLSTLEMDDRSHYTCEVTWQTPD 121
            V +       +  Q  +Y+GR  +       G V+L++  + + D   YTC        
Sbjct: 73  AVLVHRDGREQEAEQMPEYRGRATLVQDGIAKGRVALRIRGVRVSDDGEYTCFFREDGSY 132

Query: 122 GNQVVRDKITELRVQKHSSKLLKTKTE 148
              +V  K+  L    H S  ++   E
Sbjct: 133 EEALVHLKVAALGSDPHISMQVQENGE 159


>gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo
           sapiens]
          Length = 354

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 35  GDVNLPCTY--DPL---QGYTQVLVKW--LVQRGSDPVTIFLRDSSGDHIQQ-AKYQGRL 86
           G+V LPC +  DP     G  ++ +KW  L       V +F+  S G H +    YQGR+
Sbjct: 55  GNVTLPCKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFV--SMGYHKKTYGGYQGRV 112

Query: 87  HVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDGNQVV 126
            +      D SL ++ L ++D   Y CEV     D   VV
Sbjct: 113 FLKGGSDSDASLVITDLTLEDYGRYKCEVIEGLEDDTVVV 152


>gi|30179909 paired immunoglobulin-like type 2 receptor alpha
           isoform 1 precursor [Homo sapiens]
          Length = 303

 Score = 36.2 bits (82), Expect = 0.037
 Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 23/154 (14%)

Query: 98  LQLSTLEMDDRSHYTCEV----------TWQTPDGNQVVRDKITELRVQKHSSKLLKTKT 147
           L++S L+  D+S Y C V           WQ+ +G ++   +      Q+ SS +  T  
Sbjct: 110 LRISNLQKQDQSVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSS-MTTTWR 168

Query: 148 EAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFTM 207
            + TT T  L+ T   ++S  W   +     ET+ G   ++ V   I+I+ L C++ +  
Sbjct: 169 LSSTTTTTGLRVTQGKRRSDSWHISL-----ETAVGVAVAVTVLG-IMILGLICLLRWRR 222

Query: 208 AYIMLCRKTSQQEHVYEAARAHAREANDSGETMR 241
                 RK  Q+      AR   +   +  E +R
Sbjct: 223 ------RKGQQRTKATTPAREPFQNTEEPYENIR 250


>gi|68223315 CD47 antigen isoform 3 precursor [Homo sapiens]
          Length = 312

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 37  VNLPC--TYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPG 94
           V +PC  T    Q  T+V VKW   +G D  T F    +   +       ++ VS  + G
Sbjct: 37  VVIPCFVTNMEAQNTTEVYVKWKF-KGRDIYT-FDGALNKSTVPTDFSSAKIEVSQLLKG 94

Query: 95  DVSLQLSTLE-MDDRSHYTCEVTWQTPDGNQVVRDK 129
           D SL++   + +    +YTCEVT  T +G  ++  K
Sbjct: 95  DASLKMDKSDAVSHTGNYTCEVTELTREGETIIELK 130


>gi|38683836 CD47 antigen isoform 2 precursor [Homo sapiens]
          Length = 305

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 37  VNLPC--TYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPG 94
           V +PC  T    Q  T+V VKW   +G D  T F    +   +       ++ VS  + G
Sbjct: 37  VVIPCFVTNMEAQNTTEVYVKWKF-KGRDIYT-FDGALNKSTVPTDFSSAKIEVSQLLKG 94

Query: 95  DVSLQLSTLE-MDDRSHYTCEVTWQTPDGNQVVRDK 129
           D SL++   + +    +YTCEVT  T +G  ++  K
Sbjct: 95  DASLKMDKSDAVSHTGNYTCEVTELTREGETIIELK 130


>gi|4502673 CD47 antigen isoform 1 precursor [Homo sapiens]
          Length = 323

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 37  VNLPC--TYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPG 94
           V +PC  T    Q  T+V VKW   +G D  T F    +   +       ++ VS  + G
Sbjct: 37  VVIPCFVTNMEAQNTTEVYVKWKF-KGRDIYT-FDGALNKSTVPTDFSSAKIEVSQLLKG 94

Query: 95  DVSLQLSTLE-MDDRSHYTCEVTWQTPDGNQVVRDK 129
           D SL++   + +    +YTCEVT  T +G  ++  K
Sbjct: 95  DASLKMDKSDAVSHTGNYTCEVTELTREGETIIELK 130


>gi|189571583 intercellular adhesion molecule 5 precursor [Homo
           sapiens]
          Length = 924

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 92  VPGD-VSLQLSTLEMDDRSHYTCEVTWQTPDGNQVVRDKITELRVQKHSSKLLKTKTEAP 150
           VPG    LQL+  E DDR  + C+ T    DG  +++++  ELRV  ++ +L    ++ P
Sbjct: 361 VPGQPAQLQLNATENDDRRSFFCDATLDV-DGETLIKNRSAELRV-LYAPRL--DDSDCP 416

Query: 151 TTMTYPLKATSTVK 164
            + T+P     T++
Sbjct: 417 RSWTWPEGPEQTLR 430


>gi|13376115 adipocyte-specific adhesion molecule [Homo sapiens]
          Length = 373

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 12/120 (10%)

Query: 1   MGILLGLLLLGHL--TVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLV 58
           M +LL LLL+ +   T+ T+        E VT P    + LP   D L       ++WL+
Sbjct: 1   MSLLLLLLLVSYYVGTLGTHTEIKRVAEEKVTLPCHHQLGLP-EKDTLD------IEWLL 53

Query: 59  --QRGSDPVTIFLRDSSGDHIQQAKYQGRL-HVSHKVPGDVSLQLSTLEMDDRSHYTCEV 115
               G+  V I        +    + +GR+   S+ + GD SLQ+  L+  D   YTC+V
Sbjct: 54  TDNEGNQKVVITYSSRHVYNNLTEEQKGRVAFASNFLAGDASLQIEPLKPSDEGRYTCKV 113


>gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo
           sapiens]
          Length = 1214

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 50  TQVLVKWLVQRGSDP----VTIFLRDSSGDHIQQA---KYQGRLHVSHKVPGDVSLQLST 102
           +Q++V+W V + + P    V    RD++  + +QA     +GRLH+    PG   L +  
Sbjct: 868 SQLMVEWFVWKPNHPERETVARLSRDATFHYGEQAAKNNLKGRLHLESPSPGVYRLFIQN 927

Query: 103 LEMDDRSHYTCEV 115
           + + D   Y+C V
Sbjct: 928 VAVQDSGTYSCHV 940


>gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo
           sapiens]
          Length = 1194

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 50  TQVLVKWLVQRGSDP----VTIFLRDSSGDHIQQA---KYQGRLHVSHKVPGDVSLQLST 102
           +Q++V+W V + + P    V    RD++  + +QA     +GRLH+    PG   L +  
Sbjct: 848 SQLMVEWFVWKPNHPERETVARLSRDATFHYGEQAAKNNLKGRLHLESPSPGVYRLFIQN 907

Query: 103 LEMDDRSHYTCEV 115
           + + D   Y+C V
Sbjct: 908 VAVQDSGTYSCHV 920


>gi|99028881 V-set domain containing T cell activation inhibitor 1
           [Homo sapiens]
          Length = 282

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 39  LPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHV--SHKVPGDV 96
           L CT++P    + ++++WL +     V  F         Q   ++GR  V     + G+ 
Sbjct: 54  LSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNA 113

Query: 97  SLQLSTLEMDDRSHYTCEVTWQTPDGN 123
           SL+L  +++ D   Y C +      GN
Sbjct: 114 SLRLKNVQLTDAGTYKCYIITSKGKGN 140


>gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4
           precursor [Homo sapiens]
          Length = 171

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 36  DVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGD 95
           +V LPC   P +  T + V W     S  V ++      D  Q  +Y+GR  +     G+
Sbjct: 48  EVELPCRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQAPEYRGRTELLKDAIGE 107

Query: 96  --VSLQLSTLEMDDRSHYTC 113
             V+L++  +   D   +TC
Sbjct: 108 GKVTLRIRNVRFSDEGGFTC 127


>gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4
           precursor [Homo sapiens]
          Length = 171

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 36  DVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGD 95
           +V LPC   P +  T + V W     S  V ++      D  Q  +Y+GR  +     G+
Sbjct: 48  EVELPCRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQAPEYRGRTELLKDAIGE 107

Query: 96  --VSLQLSTLEMDDRSHYTC 113
             V+L++  +   D   +TC
Sbjct: 108 GKVTLRIRNVRFSDEGGFTC 127


>gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5
           precursor [Homo sapiens]
          Length = 213

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 36  DVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGD 95
           +V LPC   P +  T + V W     S  V ++      D  Q  +Y+GR  +     G+
Sbjct: 48  EVELPCRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQAPEYRGRTELLKDAIGE 107

Query: 96  --VSLQLSTLEMDDRSHYTC 113
             V+L++  +   D   +TC
Sbjct: 108 GKVTLRIRNVRFSDEGGFTC 127


>gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2
           precursor [Homo sapiens]
          Length = 206

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 36  DVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGD 95
           +V LPC   P +  T + V W     S  V ++      D  Q  +Y+GR  +     G+
Sbjct: 48  EVELPCRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQAPEYRGRTELLKDAIGE 107

Query: 96  --VSLQLSTLEMDDRSHYTC 113
             V+L++  +   D   +TC
Sbjct: 108 GKVTLRIRNVRFSDEGGFTC 127


>gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3
           precursor [Homo sapiens]
          Length = 224

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 36  DVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGD 95
           +V LPC   P +  T + V W     S  V ++      D  Q  +Y+GR  +     G+
Sbjct: 48  EVELPCRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQAPEYRGRTELLKDAIGE 107

Query: 96  --VSLQLSTLEMDDRSHYTC 113
             V+L++  +   D   +TC
Sbjct: 108 GKVTLRIRNVRFSDEGGFTC 127


>gi|56788387 myelin oligodendrocyte glycoprotein isoform beta3
           precursor [Homo sapiens]
          Length = 229

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 36  DVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGD 95
           +V LPC   P +  T + V W     S  V ++      D  Q  +Y+GR  +     G+
Sbjct: 48  EVELPCRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQAPEYRGRTELLKDAIGE 107

Query: 96  --VSLQLSTLEMDDRSHYTC 113
             V+L++  +   D   +TC
Sbjct: 108 GKVTLRIRNVRFSDEGGFTC 127


>gi|56788385 myelin oligodendrocyte glycoprotein isoform beta1
           precursor [Homo sapiens]
          Length = 252

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 36  DVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGD 95
           +V LPC   P +  T + V W     S  V ++      D  Q  +Y+GR  +     G+
Sbjct: 48  EVELPCRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQAPEYRGRTELLKDAIGE 107

Query: 96  --VSLQLSTLEMDDRSHYTC 113
             V+L++  +   D   +TC
Sbjct: 108 GKVTLRIRNVRFSDEGGFTC 127


>gi|56788383 myelin oligodendrocyte glycoprotein isoform alpha2
           precursor [Homo sapiens]
          Length = 208

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 36  DVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGD 95
           +V LPC   P +  T + V W     S  V ++      D  Q  +Y+GR  +     G+
Sbjct: 48  EVELPCRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQAPEYRGRTELLKDAIGE 107

Query: 96  --VSLQLSTLEMDDRSHYTC 113
             V+L++  +   D   +TC
Sbjct: 108 GKVTLRIRNVRFSDEGGFTC 127


>gi|56788381 myelin oligodendrocyte glycoprotein isoform alpha1
           precursor [Homo sapiens]
          Length = 247

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 36  DVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGD 95
           +V LPC   P +  T + V W     S  V ++      D  Q  +Y+GR  +     G+
Sbjct: 48  EVELPCRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQAPEYRGRTELLKDAIGE 107

Query: 96  --VSLQLSTLEMDDRSHYTC 113
             V+L++  +   D   +TC
Sbjct: 108 GKVTLRIRNVRFSDEGGFTC 127


>gi|42560233 poliovirus receptor-related 1 isoform 3 [Homo sapiens]
          Length = 352

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 22  ILEVPESVTGPWKGDVNLPCTY-DPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQA 80
           +++V +S+ G    DV L C++ +PL       V W          + + + S      A
Sbjct: 32  VVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLA 91

Query: 81  KYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDGNQ 124
            Y+ R+        D +++LS LE++D   Y CE     P GN+
Sbjct: 92  PYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFA-TFPTGNR 134


>gi|42560231 poliovirus receptor-related 1 isoform 2 [Homo sapiens]
          Length = 458

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 22  ILEVPESVTGPWKGDVNLPCTY-DPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQA 80
           +++V +S+ G    DV L C++ +PL       V W          + + + S      A
Sbjct: 32  VVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLA 91

Query: 81  KYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDGNQ 124
            Y+ R+        D +++LS LE++D   Y CE     P GN+
Sbjct: 92  PYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFA-TFPTGNR 134


>gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo sapiens]
          Length = 517

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 22  ILEVPESVTGPWKGDVNLPCTY-DPLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQA 80
           +++V +S+ G    DV L C++ +PL       V W          + + + S      A
Sbjct: 32  VVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLA 91

Query: 81  KYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDGNQ 124
            Y+ R+        D +++LS LE++D   Y CE     P GN+
Sbjct: 92  PYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFA-TFPTGNR 134


>gi|148743776 V-set and transmembrane domain containing 2 [Homo
           sapiens]
          Length = 236

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 21/107 (19%)

Query: 24  EVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLR------------- 70
           E P +VT     +V + C +        + ++W   RG + +                  
Sbjct: 31  EFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLDPGAEGAGAQVELLPDRD 90

Query: 71  -DSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVT 116
            DS G  I   K QG   +SHK      LQ+S +   D   Y C VT
Sbjct: 91  PDSDGTKISTVKVQGN-DISHK------LQISKVRKKDEGLYECRVT 130


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,748,578
Number of Sequences: 37866
Number of extensions: 504211
Number of successful extensions: 1566
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1521
Number of HSP's gapped (non-prelim): 128
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.