Guide to the Human Genome
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Name: C10orf76 Sequence: fasta or formatted (689aa) NCBI GI: 154350213
Description:

hypothetical protein LOC79591

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         42           2
 C cysteine            2.2         15           1
 D aspartate           4.4         30           2
 E glutamate           7.3         50           3
 F phenylalanine       3.9         27           2
 G glycine             2.9         20           2
 H histidine           3.5         24           1
 I isoleucine          6.2         43           2
 K lysine              6.0         41           2
 L leucine            13.6         94           3
 M methionine          3.9         27           2
 N asparagine          5.5         38           1
 P proline             3.3         23           2
 Q glutamine           3.6         25           1
 R arginine            4.1         28           2
 S serine              7.4         51           2
 T threonine           5.1         35           2
 V valine              7.0         48           2
 W tryptophan          0.6          4           1
 Y tyrosine            3.5         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79591 
POU2F1                0.008   POU class 2 homeobox 1 
TNPO2                 0.007   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.007   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.007   transportin 2 (importin 3, karyopherin beta 2b) isof...
TBP                   0.006   TATA box binding protein 
KLHL10                0.006   kelch-like 10 
PRG4                  0.005   proteoglycan 4 isoform D 
PRG4                  0.005   proteoglycan 4 isoform C 
PRG4                  0.005   proteoglycan 4 isoform B 
PRG4                  0.005   proteoglycan 4 isoform A 
ZNF828                0.005   zinc finger protein 828 
NIN                   0.004   ninein isoform 5 
NIN                   0.004   ninein isoform 1 
NIN                   0.004   ninein isoform 2 
MLLT6                 0.004   myeloid/lymphoid or mixed-lineage leukemia (trithora...
WASF1                 0.004   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.004   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.004   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.004   Wiskott-Aldrich syndrome protein family member 1 [Hom...
MUC2                  0.004   mucin 2 precursor 
KIAA1429              0.004   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.004   hypothetical protein LOC25962 isoform 2 
C18orf34              0.004   hypothetical protein LOC374864 isoform 1 
C18orf34              0.004   hypothetical protein LOC374864 isoform 2 
MEGF9                 0.004   multiple EGF-like-domains 9 
PPP2R5C               0.004   gamma isoform of regulatory subunit B56, protein pho...
PPP2R5C               0.004   gamma isoform of regulatory subunit B56, protein ph...
PPP2R5C               0.004   gamma isoform of regulatory subunit B56, protein ph...
PPP2R5C               0.004   gamma isoform of regulatory subunit B56, protein pho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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