Guide to the Human Genome
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Search of human proteins with 154240740

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|154240740 RALY RNA binding protein-like isoform 2 [Homo
sapiens]
         (291 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]   582   e-166
gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]   582   e-166
gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]   582   e-166
gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]   582   e-166
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ...   283   1e-76
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a...   271   4e-73
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a...   271   4e-73
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b...   268   3e-72
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b...   268   3e-72
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho...   245   3e-65
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated...   244   6e-65
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom...   241   5e-64
gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ...   237   1e-62
gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc...   237   1e-62
gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom...   237   1e-62
gi|5454064 RNA binding motif protein 14 [Homo sapiens]                 65   9e-11
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...    49   7e-06
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...    49   7e-06
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...    49   7e-06
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...    49   7e-06
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa...    45   8e-05
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap...    45   8e-05
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]         45   8e-05
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-...    45   1e-04
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ...    45   1e-04
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]      45   1e-04
gi|188219593 TIA1 protein isoform 1 [Homo sapiens]                     44   1e-04
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso...    44   1e-04
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot...    44   2e-04
gi|188219591 TIA1 protein isoform 2 [Homo sapiens]                     43   3e-04

>gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]
          Length = 291

 Score =  582 bits (1500), Expect = e-166
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
           MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
Sbjct: 1   MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60

Query: 61  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
           QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
Sbjct: 61  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120

Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180
           VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180

Query: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240
           STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
Sbjct: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240

Query: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
           LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
Sbjct: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291


>gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]
          Length = 291

 Score =  582 bits (1500), Expect = e-166
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
           MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
Sbjct: 1   MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60

Query: 61  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
           QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
Sbjct: 61  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120

Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180
           VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180

Query: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240
           STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
Sbjct: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240

Query: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
           LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
Sbjct: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291


>gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]
          Length = 291

 Score =  582 bits (1500), Expect = e-166
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
           MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
Sbjct: 1   MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60

Query: 61  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
           QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
Sbjct: 61  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120

Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180
           VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180

Query: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240
           STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
Sbjct: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240

Query: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
           LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
Sbjct: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291


>gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]
          Length = 304

 Score =  582 bits (1500), Expect = e-166
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
           MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
Sbjct: 14  MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 73

Query: 61  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
           QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
Sbjct: 74  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 133

Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180
           VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
Sbjct: 134 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 193

Query: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240
           STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
Sbjct: 194 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 253

Query: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
           LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
Sbjct: 254 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304


>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
           with lethal yellow) long isoform [Homo sapiens]
          Length = 306

 Score =  283 bits (725), Expect = 1e-76
 Identities = 153/236 (64%), Positives = 175/236 (74%), Gaps = 15/236 (6%)

Query: 1   MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
           M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1   MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60

Query: 61  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
           QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR  SA+Y          
Sbjct: 61  QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109

Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
             GY+FDYDYYRDDFY+RLFDY GR+ P P    +P+KRPRV V   RR K    +K  +
Sbjct: 110 -SGYIFDYDYYRDDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 168

Query: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233
           RSTA  + S   KLKS ELQ IK ELTQIK+ ID+LL RLE+I  +QKA  + +KK
Sbjct: 169 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 224


>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score =  271 bits (694), Expect = 4e-73
 Identities = 156/292 (53%), Positives = 196/292 (67%), Gaps = 18/292 (6%)

Query: 8   SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
           SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 3   SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62

Query: 68  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPF---LSVGGY 124
           ARAAVAGE+ R+IAGQ LDIN+A EPK  R K G KR  + +Y   ++ P    L    +
Sbjct: 63  ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122

Query: 125 VFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRS 181
             DYD+ R D+Y+R++ Y  RVPPPP   RAV+P KR RV+  T+RRGK  F+ K G R 
Sbjct: 123 DLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRG 181

Query: 182 TASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVL 241
           +   S   KLK D+LQ IKKELTQIK K+DSLL  LEKIEK+Q  +A   K    E    
Sbjct: 182 S---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE---- 234

Query: 242 IQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
            +E+  S +    T  +  +EGG D D  E  D +++D +ED G +    IK
Sbjct: 235 -EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 284


>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score =  271 bits (694), Expect = 4e-73
 Identities = 156/292 (53%), Positives = 196/292 (67%), Gaps = 18/292 (6%)

Query: 8   SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
           SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 3   SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62

Query: 68  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPF---LSVGGY 124
           ARAAVAGE+ R+IAGQ LDIN+A EPK  R K G KR  + +Y   ++ P    L    +
Sbjct: 63  ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122

Query: 125 VFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRS 181
             DYD+ R D+Y+R++ Y  RVPPPP   RAV+P KR RV+  T+RRGK  F+ K G R 
Sbjct: 123 DLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRG 181

Query: 182 TASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVL 241
           +   S   KLK D+LQ IKKELTQIK K+DSLL  LEKIEK+Q  +A   K    E    
Sbjct: 182 S---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE---- 234

Query: 242 IQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
            +E+  S +    T  +  +EGG D D  E  D +++D +ED G +    IK
Sbjct: 235 -EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 284


>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score =  268 bits (686), Expect = 3e-72
 Identities = 155/290 (53%), Positives = 193/290 (66%), Gaps = 27/290 (9%)

Query: 8   SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
           SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 3   SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62

Query: 68  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
           ARAAVAGE+ R+IAGQ LDIN+A EPK  R K G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY------------GSSFD 110

Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
            DY ++ D+Y+R++ Y  RVPPPP   RAV+P KR RV+  T+RRGK  F+ K G R + 
Sbjct: 111 LDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGS- 169

Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQ 243
             S   KLK D+LQ IKKELTQIK K+DSLL  LEKIEK+Q  +A   K    E     +
Sbjct: 170 --SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE-----E 222

Query: 244 EECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
           E+  S +    T  +  +EGG D D  E  D +++D +ED G +    IK
Sbjct: 223 EQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 271


>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score =  268 bits (686), Expect = 3e-72
 Identities = 155/290 (53%), Positives = 193/290 (66%), Gaps = 27/290 (9%)

Query: 8   SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
           SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 3   SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62

Query: 68  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
           ARAAVAGE+ R+IAGQ LDIN+A EPK  R K G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY------------GSSFD 110

Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
            DY ++ D+Y+R++ Y  RVPPPP   RAV+P KR RV+  T+RRGK  F+ K G R + 
Sbjct: 111 LDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGS- 169

Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQ 243
             S   KLK D+LQ IKKELTQIK K+DSLL  LEKIEK+Q  +A   K    E     +
Sbjct: 170 --SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE-----E 222

Query: 244 EECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
           E+  S +    T  +  +EGG D D  E  D +++D +ED G +    IK
Sbjct: 223 EQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 271


>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
           sapiens]
          Length = 293

 Score =  245 bits (626), Expect = 3e-65
 Identities = 144/289 (49%), Positives = 185/289 (64%), Gaps = 25/289 (8%)

Query: 8   SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 3   SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62

Query: 68  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
           ARAAVAGE+ R+IA Q +DIN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110

Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
            DY ++ D+Y+ ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGS- 169

Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+Q K E E +  + EE     
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223

Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
           Q     +  +   +  +EGG + D  E  D +++D +ED G +    IK
Sbjct: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDVNEDQGDDQLELIK 271


>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
           with lethal yellow) short isoform [Homo sapiens]
          Length = 290

 Score =  244 bits (623), Expect = 6e-65
 Identities = 140/236 (59%), Positives = 160/236 (67%), Gaps = 31/236 (13%)

Query: 1   MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
           M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1   MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60

Query: 61  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
           QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR  SA+Y          
Sbjct: 61  QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109

Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
                            RLFDY GR+ P P    +P+KRPRV V   RR K    +K  +
Sbjct: 110 -----------------RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 152

Query: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233
           RSTA  + S   KLKS ELQ IK ELTQIK+ ID+LL RLE+I  +QKA  + +KK
Sbjct: 153 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 208


>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
           sapiens]
          Length = 293

 Score =  241 bits (615), Expect = 5e-64
 Identities = 143/289 (49%), Positives = 182/289 (62%), Gaps = 25/289 (8%)

Query: 8   SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 3   SNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62

Query: 68  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
           ARAAVAGE+ R+IA Q   IN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110

Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
            DY ++ D+Y+ ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169

Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+Q K E E +  + EE     
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223

Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
           Q     +  +   +  +EGG + D  E  D +++D +ED G      IK
Sbjct: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDDNEDQGDNQLHLIK 271


>gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein
           C-like [Homo sapiens]
          Length = 293

 Score =  237 bits (604), Expect = 1e-62
 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%)

Query: 8   SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 3   SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62

Query: 68  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
           ARAAVAGE+ R+IA Q +DIN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110

Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
            DY  + D+Y  ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169

Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+  K   E +  + EE     
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223

Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 288
           Q    S+      +  +EGG D   EE     ++D ++ G ++L L
Sbjct: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269


>gi|239752620 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein C-like [Homo sapiens]
          Length = 293

 Score =  237 bits (604), Expect = 1e-62
 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%)

Query: 8   SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 3   SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62

Query: 68  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
           ARAAVAGE+ R+IA Q +DIN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110

Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
            DY  + D+Y  ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169

Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+  K   E +  + EE     
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223

Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 288
           Q    S+      +  +EGG D   EE     ++D ++ G ++L L
Sbjct: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269


>gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo
           sapiens]
          Length = 293

 Score =  237 bits (604), Expect = 1e-62
 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%)

Query: 8   SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 3   SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62

Query: 68  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
           ARAAVAGE+ R+IA Q +DIN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110

Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
            DY  + D+Y  ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169

Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+  K   E +  + EE     
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223

Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 288
           Q    S+      +  +EGG D   EE     ++D ++ G ++L L
Sbjct: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269


>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
          Length = 669

 Score = 64.7 bits (156), Expect = 9e-11
 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 29/200 (14%)

Query: 10  VTNKNDPKSINS-RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHA 68
           V   + P+ +N+ ++F+GN++ A   + ++ ++F + G+++ C V K YAFV    E  A
Sbjct: 67  VVEMSRPRPLNTWKIFVGNVSAACTSQ-ELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125

Query: 69  RAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEP------FLSVG 122
           +AA+A  N + + G+ +++ ++   K  +  PG    L+     ++K+P      F   G
Sbjct: 126 KAAIAQLNGKEVKGKRINVELS--TKGQKKGPG----LAVQSGDKTKKPGAGDTAFPGTG 179

Query: 123 GYVFDYDYYRDDFYNRL--FDYHGRVPPPP---RAVIPLKR---------PRVAVTTTRR 168
           G+   +D Y+  F N    FD   R P PP   R   PL+R         P  A   T R
Sbjct: 180 GFSATFD-YQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATYR 238

Query: 169 GKGVFSMKGGSRSTASGSTG 188
            +   S+    R+  S S G
Sbjct: 239 AQPSVSLGAAYRAQPSASLG 258



 Score = 41.6 bits (96), Expect = 8e-04
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 22  RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHA-RAAVAGENARVI 80
           ++F+GN++ A     ++ A+F+ YG ++ C+V K +AFV       A RA  A     + 
Sbjct: 2   KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query: 81  AGQPLDINMAGEPKPYRPKPGN 102
            G+ L + M+      RP+P N
Sbjct: 62  PGRALVVEMS------RPRPLN 77


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 53/221 (23%), Positives = 79/221 (35%), Gaps = 70/221 (31%)

Query: 23  VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAG 82
           +F+ NL T + +++ +E  FS++GK+      K YAFV +     A  A+   N + I G
Sbjct: 245 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 303

Query: 83  QPLDINMAGEPKP---------------------YRPKPGNKRPLSALYRLESKEPFLSV 121
           + ++I +A  P                       Y P P    P+    R   +      
Sbjct: 304 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------ 357

Query: 122 GGYVFDYDY-----YRDDFYNRLFDYH---------------------------GRVPPP 149
           GGY +  DY     Y DD+Y   +DYH                           GR  PP
Sbjct: 358 GGYGYPPDYYGYEDYYDDYYG--YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 415

Query: 150 PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSK 190
           P        PR       RG+  +S +G       GS G +
Sbjct: 416 P--------PRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGR 448


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 53/221 (23%), Positives = 79/221 (35%), Gaps = 70/221 (31%)

Query: 23  VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAG 82
           +F+ NL T + +++ +E  FS++GK+      K YAFV +     A  A+   N + I G
Sbjct: 346 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 404

Query: 83  QPLDINMAGEPKP---------------------YRPKPGNKRPLSALYRLESKEPFLSV 121
           + ++I +A  P                       Y P P    P+    R   +      
Sbjct: 405 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------ 458

Query: 122 GGYVFDYDY-----YRDDFYNRLFDYH---------------------------GRVPPP 149
           GGY +  DY     Y DD+Y   +DYH                           GR  PP
Sbjct: 459 GGYGYPPDYYGYEDYYDDYYG--YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 516

Query: 150 PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSK 190
           P        PR       RG+  +S +G       GS G +
Sbjct: 517 P--------PRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGR 549


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 53/221 (23%), Positives = 79/221 (35%), Gaps = 70/221 (31%)

Query: 23  VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAG 82
           +F+ NL T + +++ +E  FS++GK+      K YAFV +     A  A+   N + I G
Sbjct: 242 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300

Query: 83  QPLDINMAGEPKP---------------------YRPKPGNKRPLSALYRLESKEPFLSV 121
           + ++I +A  P                       Y P P    P+    R   +      
Sbjct: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------ 354

Query: 122 GGYVFDYDY-----YRDDFYNRLFDYH---------------------------GRVPPP 149
           GGY +  DY     Y DD+Y   +DYH                           GR  PP
Sbjct: 355 GGYGYPPDYYGYEDYYDDYYG--YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 412

Query: 150 PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSK 190
           P        PR       RG+  +S +G       GS G +
Sbjct: 413 P--------PRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGR 445


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 53/221 (23%), Positives = 79/221 (35%), Gaps = 70/221 (31%)

Query: 23  VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAG 82
           +F+ NL T + +++ +E  FS++GK+      K YAFV +     A  A+   N + I G
Sbjct: 343 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 401

Query: 83  QPLDINMAGEPKP---------------------YRPKPGNKRPLSALYRLESKEPFLSV 121
           + ++I +A  P                       Y P P    P+    R   +      
Sbjct: 402 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------ 455

Query: 122 GGYVFDYDY-----YRDDFYNRLFDYH---------------------------GRVPPP 149
           GGY +  DY     Y DD+Y   +DYH                           GR  PP
Sbjct: 456 GGYGYPPDYYGYEDYYDDYYG--YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 513

Query: 150 PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSK 190
           P        PR       RG+  +S +G       GS G +
Sbjct: 514 P--------PRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGR 546


>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 22  RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 73
           ++FIG LNT   +K  +E +F KYG+IV   + K        G+AFV + S   A+ A  
Sbjct: 9   KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67

Query: 74  GENARVIAGQPLDINMAGEPKPYRPKPGNKRP 105
             N + + G+ + +  A +P   R + G   P
Sbjct: 68  DMNGKSLDGKAIKVEQATKPSFERGRHGPPPP 99


>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 22  RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 73
           ++FIG LNT   +K  +E +F KYG+IV   + K        G+AFV + S   A+ A  
Sbjct: 9   KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67

Query: 74  GENARVIAGQPLDINMAGEPKPYRPKPGNKRP 105
             N + + G+ + +  A +P   R + G   P
Sbjct: 68  DMNGKSLDGKAIKVEQATKPSFERGRHGPPPP 99


>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
          Length = 391

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 73
          ++FIG LNT   +K  +EA+F KYG+IV   + K        G+AFV + S   A+ A  
Sbjct: 9  KLFIGGLNTETNEKA-LEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67

Query: 74 GENARVIAGQPLDINMAGEP 93
            N + + G+ + +  A +P
Sbjct: 68 DMNGKSLDGKAIKVEQATKP 87


>gi|239752336 PREDICTED: similar to RNA binding motif protein,
          X-linked [Homo sapiens]
          Length = 138

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIV------GCSVHK--GYAFVQYMSERHARAAVA 73
          + FIG LNT   KK  +EA+F KYG+IV       C  +K  G+AF+ +     A+ A  
Sbjct: 9  KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67

Query: 74 GENARVIAGQPLDINMAGEP 93
            N + + G+ + +  A +P
Sbjct: 68 DMNGKSLDGKAIKVEQATKP 87


>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
          sapiens]
          Length = 138

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIV------GCSVHK--GYAFVQYMSERHARAAVA 73
          + FIG LNT   KK  +EA+F KYG+IV       C  +K  G+AF+ +     A+ A  
Sbjct: 9  KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67

Query: 74 GENARVIAGQPLDINMAGEP 93
            N + + G+ + +  A +P
Sbjct: 68 DMNGKSLDGKAIKVEQATKP 87


>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
          Length = 344

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIA 81
          RV+IG L+  + +K DI+  FS YG+++   +  GY FV++   R A  AV   N + + 
Sbjct: 3  RVYIGRLSYNVREK-DIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC 61

Query: 82 GQPLDINMAGEPK 94
          G+ + +  A  P+
Sbjct: 62 GERVIVEHARGPR 74


>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
          Length = 375

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 23  VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSV------HKGYAFVQYMSERHARAAVAGEN 76
           +++GNL+  + + + ++ +FS+ G    C +      +  Y FV++   RHA AA+A  N
Sbjct: 9   LYVGNLSRDVTEALILQ-LFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67

Query: 77  ARVIAGQPLDINMAGEPKPYRPKPGN 102
            R I G+ + +N A  P   +    N
Sbjct: 68  GRKIMGKEVKVNWATTPSSQKKDTSN 93



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 21/113 (18%)

Query: 2   TGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVH--KGYAF 59
           T +     V N++ P   N  V+ G + + + +++ +   FS +G+I+   V   KGY+F
Sbjct: 186 TKQLSYDEVVNQSSPS--NCTVYCGGVTSGLTEQL-MRQTFSPFGQIMEIRVFPDKGYSF 242

Query: 60  VQYMSERHARAAVAGENARVIAG---------QPLDI-------NMAGEPKPY 96
           V++ S   A  A+   N   I G         + LD+       N  G P+PY
Sbjct: 243 VRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPY 295


>gi|16905517 FUS interacting protein (serine-arginine rich) 1
           isoform 2 [Homo sapiens]
          Length = 262

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 53/235 (22%), Positives = 98/235 (41%), Gaps = 32/235 (13%)

Query: 20  NSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVH--------KGYAFVQYMSERHARAA 71
           N+ +F+ N+     +  D+   F +YG IV   V         +G+A+VQ+   R A  A
Sbjct: 9   NTSLFVRNVADD-TRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67

Query: 72  VAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDYY 131
           +   + + I G+ ++I  A          G+++  + +   E +  + S      DYD Y
Sbjct: 68  LHNLDRKWICGRQIEIQFA---------QGDRKTPNQMKAKEGRNVYSS--SRYDDYDRY 116

Query: 132 RDD---------FYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRST 182
           R             +R FDY+ R    PR   P  RPR + + +   +     +  SRS 
Sbjct: 117 RRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSK 176

Query: 183 ASGSTGSK---LKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQ 234
           ++  + SK    K  + ++  +  +  KT+  S        +   + E E++KK+
Sbjct: 177 SNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKE 231


>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
           G-T [Homo sapiens]
          Length = 392

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 52/196 (26%), Positives = 76/196 (38%), Gaps = 48/196 (24%)

Query: 22  RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 73
           ++FIG LN    +K  +EA F KYG+IV   + K        G+AFV + S   A+AA  
Sbjct: 9   KLFIGGLNLETDEKA-LEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67

Query: 74  GENARVIAGQPLDINMAGEPKPYRPKPGNKRPLS---------------ALYRLESKEPF 118
             N + + G+ + +  A +P     + G   P S                  R  S+   
Sbjct: 68  DMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRRSPSRGGP 127

Query: 119 LSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKR---PRVAVTTTRRGKGVFSM 175
              GGY  D+D                   P RA +P+KR   PR      +R     + 
Sbjct: 128 DDDGGYTADFDL-----------------RPSRAPMPMKRGPPPRRVGPPPKRA----AP 166

Query: 176 KGGSRSTASGSTGSKL 191
            G +RS+  G  G  L
Sbjct: 167 SGPARSSGGGMRGRAL 182


>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
          Length = 386

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 23 VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSV------HKGYAFVQYMSERHARAAVAGEN 76
          +++GNL+  + + + ++ +FS+ G    C +      +  Y FV++   RHA AA+A  N
Sbjct: 9  LYVGNLSRDVTEALILQ-LFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67

Query: 77 ARVIAGQPLDINMAGEP 93
           R I G+ + +N A  P
Sbjct: 68 GRKIMGKEVKVNWATTP 84



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 21/113 (18%)

Query: 2   TGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVH--KGYAF 59
           T +     V N++ P   N  V+ G + + + +++ +   FS +G+I+   V   KGY+F
Sbjct: 197 TKQLSYDEVVNQSSPS--NCTVYCGGVTSGLTEQL-MRQTFSPFGQIMEIRVFPDKGYSF 253

Query: 60  VQYMSERHARAAVAGENARVIAG---------QPLDI-------NMAGEPKPY 96
           V++ S   A  A+   N   I G         + LD+       N  G P+PY
Sbjct: 254 VRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPY 306


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,971,818
Number of Sequences: 37866
Number of extensions: 590511
Number of successful extensions: 4197
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 308
Number of HSP's that attempted gapping in prelim test: 3623
Number of HSP's gapped (non-prelim): 842
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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