BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens] (291 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens] 582 e-166 gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens] 582 e-166 gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens] 582 e-166 gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens] 582 e-166 gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 283 1e-76 gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a... 271 4e-73 gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a... 271 4e-73 gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b... 268 3e-72 gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b... 268 3e-72 gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho... 245 3e-65 gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 244 6e-65 gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom... 241 5e-64 gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ... 237 1e-62 gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc... 237 1e-62 gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom... 237 1e-62 gi|5454064 RNA binding motif protein 14 [Homo sapiens] 65 9e-11 gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 49 7e-06 gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 49 7e-06 gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 49 7e-06 gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 49 7e-06 gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 45 8e-05 gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 45 8e-05 gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 45 8e-05 gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 45 1e-04 gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 45 1e-04 gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 45 1e-04 gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 44 1e-04 gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 44 1e-04 gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 44 2e-04 gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 43 3e-04 >gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens] Length = 291 Score = 582 bits (1500), Expect = e-166 Identities = 291/291 (100%), Positives = 291/291 (100%) Query: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60 Query: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120 Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180 Query: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV Sbjct: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240 Query: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK Sbjct: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291 >gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens] Length = 291 Score = 582 bits (1500), Expect = e-166 Identities = 291/291 (100%), Positives = 291/291 (100%) Query: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60 Query: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120 Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180 Query: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV Sbjct: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240 Query: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK Sbjct: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291 >gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens] Length = 291 Score = 582 bits (1500), Expect = e-166 Identities = 291/291 (100%), Positives = 291/291 (100%) Query: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60 Query: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120 Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180 Query: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV Sbjct: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240 Query: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK Sbjct: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291 >gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens] Length = 304 Score = 582 bits (1500), Expect = e-166 Identities = 291/291 (100%), Positives = 291/291 (100%) Query: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV Sbjct: 14 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 73 Query: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS Sbjct: 74 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 133 Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR Sbjct: 134 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 193 Query: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV Sbjct: 194 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 253 Query: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK Sbjct: 254 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304 >gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated with lethal yellow) long isoform [Homo sapiens] Length = 306 Score = 283 bits (725), Expect = 1e-76 Identities = 153/236 (64%), Positives = 175/236 (74%), Gaps = 15/236 (6%) Query: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60 M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV Sbjct: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60 Query: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120 QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y Sbjct: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109 Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179 GY+FDYDYYRDDFY+RLFDY GR+ P P +P+KRPRV V RR K +K + Sbjct: 110 -SGYIFDYDYYRDDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 168 Query: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233 RSTA + S KLKS ELQ IK ELTQIK+ ID+LL RLE+I +QKA + +KK Sbjct: 169 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 224 >gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a [Homo sapiens] Length = 306 Score = 271 bits (694), Expect = 4e-73 Identities = 156/292 (53%), Positives = 196/292 (67%), Gaps = 18/292 (6%) Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67 SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+ Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62 Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPF---LSVGGY 124 ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y ++ P L + Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122 Query: 125 VFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRS 181 DYD+ R D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R Sbjct: 123 DLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRG 181 Query: 182 TASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVL 241 + S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E Sbjct: 182 S---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE---- 234 Query: 242 IQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291 +E+ S + T + +EGG D D E D +++D +ED G + IK Sbjct: 235 -EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 284 >gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a [Homo sapiens] Length = 306 Score = 271 bits (694), Expect = 4e-73 Identities = 156/292 (53%), Positives = 196/292 (67%), Gaps = 18/292 (6%) Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67 SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+ Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62 Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPF---LSVGGY 124 ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y ++ P L + Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122 Query: 125 VFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRS 181 DYD+ R D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R Sbjct: 123 DLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRG 181 Query: 182 TASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVL 241 + S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E Sbjct: 182 S---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE---- 234 Query: 242 IQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291 +E+ S + T + +EGG D D E D +++D +ED G + IK Sbjct: 235 -EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 284 >gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b [Homo sapiens] Length = 293 Score = 268 bits (686), Expect = 3e-72 Identities = 155/290 (53%), Positives = 193/290 (66%), Gaps = 27/290 (9%) Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67 SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+ Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62 Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127 ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y G FD Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY------------GSSFD 110 Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183 DY ++ D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R + Sbjct: 111 LDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGS- 169 Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQ 243 S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E + Sbjct: 170 --SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE-----E 222 Query: 244 EECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291 E+ S + T + +EGG D D E D +++D +ED G + IK Sbjct: 223 EQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 271 >gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b [Homo sapiens] Length = 293 Score = 268 bits (686), Expect = 3e-72 Identities = 155/290 (53%), Positives = 193/290 (66%), Gaps = 27/290 (9%) Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67 SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+ Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62 Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127 ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y G FD Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY------------GSSFD 110 Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183 DY ++ D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R + Sbjct: 111 LDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGS- 169 Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQ 243 S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E + Sbjct: 170 --SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE-----E 222 Query: 244 EECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291 E+ S + T + +EGG D D E D +++D +ED G + IK Sbjct: 223 EQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 271 >gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo sapiens] Length = 293 Score = 245 bits (626), Expect = 3e-65 Identities = 144/289 (49%), Positives = 185/289 (64%), Gaps = 25/289 (8%) Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67 SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++ Sbjct: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62 Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127 ARAAVAGE+ R+IA Q +DIN+A EPK R G KR + +Y G FD Sbjct: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110 Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183 DY ++ D+Y+ ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R + Sbjct: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGS- 169 Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242 S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+Q K E E + + EE Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223 Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291 Q + + + +EGG + D E D +++D +ED G + IK Sbjct: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDVNEDQGDDQLELIK 271 >gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated with lethal yellow) short isoform [Homo sapiens] Length = 290 Score = 244 bits (623), Expect = 6e-65 Identities = 140/236 (59%), Positives = 160/236 (67%), Gaps = 31/236 (13%) Query: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60 M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV Sbjct: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60 Query: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120 QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y Sbjct: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109 Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179 RLFDY GR+ P P +P+KRPRV V RR K +K + Sbjct: 110 -----------------RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 152 Query: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233 RSTA + S KLKS ELQ IK ELTQIK+ ID+LL RLE+I +QKA + +KK Sbjct: 153 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 208 >gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo sapiens] Length = 293 Score = 241 bits (615), Expect = 5e-64 Identities = 143/289 (49%), Positives = 182/289 (62%), Gaps = 25/289 (8%) Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67 SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++ Sbjct: 3 SNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62 Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127 ARAAVAGE+ R+IA Q IN+A EPK R G KR + +Y G FD Sbjct: 63 ARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110 Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183 DY ++ D+Y+ ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R + Sbjct: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169 Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242 S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+Q K E E + + EE Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223 Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291 Q + + + +EGG + D E D +++D +ED G IK Sbjct: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDDNEDQGDNQLHLIK 271 >gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein C-like [Homo sapiens] Length = 293 Score = 237 bits (604), Expect = 1e-62 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%) Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67 SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++ Sbjct: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62 Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127 ARAAVAGE+ R+IA Q +DIN+A EPK R G KR + +Y G FD Sbjct: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110 Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183 DY + D+Y ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R + Sbjct: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169 Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242 S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+ K E + + EE Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223 Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 288 Q S+ + +EGG D EE ++D ++ G ++L L Sbjct: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269 >gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonucleoprotein C-like [Homo sapiens] Length = 293 Score = 237 bits (604), Expect = 1e-62 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%) Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67 SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++ Sbjct: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62 Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127 ARAAVAGE+ R+IA Q +DIN+A EPK R G KR + +Y G FD Sbjct: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110 Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183 DY + D+Y ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R + Sbjct: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169 Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242 S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+ K E + + EE Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223 Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 288 Q S+ + +EGG D EE ++D ++ G ++L L Sbjct: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269 >gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo sapiens] Length = 293 Score = 237 bits (604), Expect = 1e-62 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%) Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67 SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++ Sbjct: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62 Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127 ARAAVAGE+ R+IA Q +DIN+A EPK R G KR + +Y G FD Sbjct: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110 Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183 DY + D+Y ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R + Sbjct: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169 Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242 S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+ K E + + EE Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223 Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 288 Q S+ + +EGG D EE ++D ++ G ++L L Sbjct: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269 >gi|5454064 RNA binding motif protein 14 [Homo sapiens] Length = 669 Score = 64.7 bits (156), Expect = 9e-11 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 29/200 (14%) Query: 10 VTNKNDPKSINS-RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHA 68 V + P+ +N+ ++F+GN++ A + ++ ++F + G+++ C V K YAFV E A Sbjct: 67 VVEMSRPRPLNTWKIFVGNVSAACTSQ-ELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125 Query: 69 RAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEP------FLSVG 122 +AA+A N + + G+ +++ ++ K + PG L+ ++K+P F G Sbjct: 126 KAAIAQLNGKEVKGKRINVELS--TKGQKKGPG----LAVQSGDKTKKPGAGDTAFPGTG 179 Query: 123 GYVFDYDYYRDDFYNRL--FDYHGRVPPPP---RAVIPLKR---------PRVAVTTTRR 168 G+ +D Y+ F N FD R P PP R PL+R P A T R Sbjct: 180 GFSATFD-YQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATYR 238 Query: 169 GKGVFSMKGGSRSTASGSTG 188 + S+ R+ S S G Sbjct: 239 AQPSVSLGAAYRAQPSASLG 258 Score = 41.6 bits (96), Expect = 8e-04 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%) Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHA-RAAVAGENARVI 80 ++F+GN++ A ++ A+F+ YG ++ C+V K +AFV A RA A + Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61 Query: 81 AGQPLDINMAGEPKPYRPKPGN 102 G+ L + M+ RP+P N Sbjct: 62 PGRALVVEMS------RPRPLN 77 >gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens] Length = 535 Score = 48.5 bits (114), Expect = 7e-06 Identities = 53/221 (23%), Positives = 79/221 (35%), Gaps = 70/221 (31%) Query: 23 VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAG 82 +F+ NL T + +++ +E FS++GK+ K YAFV + A A+ N + I G Sbjct: 245 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 303 Query: 83 QPLDINMAGEPKP---------------------YRPKPGNKRPLSALYRLESKEPFLSV 121 + ++I +A P Y P P P+ R + Sbjct: 304 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------ 357 Query: 122 GGYVFDYDY-----YRDDFYNRLFDYH---------------------------GRVPPP 149 GGY + DY Y DD+Y +DYH GR PP Sbjct: 358 GGYGYPPDYYGYEDYYDDYYG--YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 415 Query: 150 PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSK 190 P PR RG+ +S +G GS G + Sbjct: 416 P--------PRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGR 448 >gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens] Length = 636 Score = 48.5 bits (114), Expect = 7e-06 Identities = 53/221 (23%), Positives = 79/221 (35%), Gaps = 70/221 (31%) Query: 23 VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAG 82 +F+ NL T + +++ +E FS++GK+ K YAFV + A A+ N + I G Sbjct: 346 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 404 Query: 83 QPLDINMAGEPKP---------------------YRPKPGNKRPLSALYRLESKEPFLSV 121 + ++I +A P Y P P P+ R + Sbjct: 405 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------ 458 Query: 122 GGYVFDYDY-----YRDDFYNRLFDYH---------------------------GRVPPP 149 GGY + DY Y DD+Y +DYH GR PP Sbjct: 459 GGYGYPPDYYGYEDYYDDYYG--YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 516 Query: 150 PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSK 190 P PR RG+ +S +G GS G + Sbjct: 517 P--------PRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGR 549 >gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens] Length = 532 Score = 48.5 bits (114), Expect = 7e-06 Identities = 53/221 (23%), Positives = 79/221 (35%), Gaps = 70/221 (31%) Query: 23 VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAG 82 +F+ NL T + +++ +E FS++GK+ K YAFV + A A+ N + I G Sbjct: 242 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300 Query: 83 QPLDINMAGEPKP---------------------YRPKPGNKRPLSALYRLESKEPFLSV 121 + ++I +A P Y P P P+ R + Sbjct: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------ 354 Query: 122 GGYVFDYDY-----YRDDFYNRLFDYH---------------------------GRVPPP 149 GGY + DY Y DD+Y +DYH GR PP Sbjct: 355 GGYGYPPDYYGYEDYYDDYYG--YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 412 Query: 150 PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSK 190 P PR RG+ +S +G GS G + Sbjct: 413 P--------PRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGR 445 >gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens] Length = 633 Score = 48.5 bits (114), Expect = 7e-06 Identities = 53/221 (23%), Positives = 79/221 (35%), Gaps = 70/221 (31%) Query: 23 VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAG 82 +F+ NL T + +++ +E FS++GK+ K YAFV + A A+ N + I G Sbjct: 343 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 401 Query: 83 QPLDINMAGEPKP---------------------YRPKPGNKRPLSALYRLESKEPFLSV 121 + ++I +A P Y P P P+ R + Sbjct: 402 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------ 455 Query: 122 GGYVFDYDY-----YRDDFYNRLFDYH---------------------------GRVPPP 149 GGY + DY Y DD+Y +DYH GR PP Sbjct: 456 GGYGYPPDYYGYEDYYDDYYG--YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 513 Query: 150 PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSK 190 P PR RG+ +S +G GS G + Sbjct: 514 P--------PRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGR 546 >gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sapiens] Length = 390 Score = 45.1 bits (105), Expect = 8e-05 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%) Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 73 ++FIG LNT +K +E +F KYG+IV + K G+AFV + S A+ A Sbjct: 9 KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67 Query: 74 GENARVIAGQPLDINMAGEPKPYRPKPGNKRP 105 N + + G+ + + A +P R + G P Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHGPPPP 99 >gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sapiens] Length = 390 Score = 45.1 bits (105), Expect = 8e-05 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%) Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 73 ++FIG LNT +K +E +F KYG+IV + K G+AFV + S A+ A Sbjct: 9 KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67 Query: 74 GENARVIAGQPLDINMAGEPKPYRPKPGNKRP 105 N + + G+ + + A +P R + G P Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHGPPPP 99 >gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] Length = 391 Score = 45.1 bits (105), Expect = 8e-05 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 9/80 (11%) Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 73 ++FIG LNT +K +EA+F KYG+IV + K G+AFV + S A+ A Sbjct: 9 KLFIGGLNTETNEKA-LEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67 Query: 74 GENARVIAGQPLDINMAGEP 93 N + + G+ + + A +P Sbjct: 68 DMNGKSLDGKAIKVEQATKP 87 >gi|239752336 PREDICTED: similar to RNA binding motif protein, X-linked [Homo sapiens] Length = 138 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%) Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIV------GCSVHK--GYAFVQYMSERHARAAVA 73 + FIG LNT KK +EA+F KYG+IV C +K G+AF+ + A+ A Sbjct: 9 KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67 Query: 74 GENARVIAGQPLDINMAGEP 93 N + + G+ + + A +P Sbjct: 68 DMNGKSLDGKAIKVEQATKP 87 >gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo sapiens] Length = 138 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%) Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIV------GCSVHK--GYAFVQYMSERHARAAVA 73 + FIG LNT KK +EA+F KYG+IV C +K G+AF+ + A+ A Sbjct: 9 KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67 Query: 74 GENARVIAGQPLDINMAGEP 93 N + + G+ + + A +P Sbjct: 68 DMNGKSLDGKAIKVEQATKP 87 >gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] Length = 344 Score = 44.7 bits (104), Expect = 1e-04 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIA 81 RV+IG L+ + +K DI+ FS YG+++ + GY FV++ R A AV N + + Sbjct: 3 RVYIGRLSYNVREK-DIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC 61 Query: 82 GQPLDINMAGEPK 94 G+ + + A P+ Sbjct: 62 GERVIVEHARGPR 74 >gi|188219593 TIA1 protein isoform 1 [Homo sapiens] Length = 375 Score = 44.3 bits (103), Expect = 1e-04 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 7/86 (8%) Query: 23 VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSV------HKGYAFVQYMSERHARAAVAGEN 76 +++GNL+ + + + ++ +FS+ G C + + Y FV++ RHA AA+A N Sbjct: 9 LYVGNLSRDVTEALILQ-LFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67 Query: 77 ARVIAGQPLDINMAGEPKPYRPKPGN 102 R I G+ + +N A P + N Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSN 93 Score = 37.7 bits (86), Expect = 0.012 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 21/113 (18%) Query: 2 TGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVH--KGYAF 59 T + V N++ P N V+ G + + + +++ + FS +G+I+ V KGY+F Sbjct: 186 TKQLSYDEVVNQSSPS--NCTVYCGGVTSGLTEQL-MRQTFSPFGQIMEIRVFPDKGYSF 242 Query: 60 VQYMSERHARAAVAGENARVIAG---------QPLDI-------NMAGEPKPY 96 V++ S A A+ N I G + LD+ N G P+PY Sbjct: 243 VRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPY 295 >gi|16905517 FUS interacting protein (serine-arginine rich) 1 isoform 2 [Homo sapiens] Length = 262 Score = 44.3 bits (103), Expect = 1e-04 Identities = 53/235 (22%), Positives = 98/235 (41%), Gaps = 32/235 (13%) Query: 20 NSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVH--------KGYAFVQYMSERHARAA 71 N+ +F+ N+ + D+ F +YG IV V +G+A+VQ+ R A A Sbjct: 9 NTSLFVRNVADD-TRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67 Query: 72 VAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDYY 131 + + + I G+ ++I A G+++ + + E + + S DYD Y Sbjct: 68 LHNLDRKWICGRQIEIQFA---------QGDRKTPNQMKAKEGRNVYSS--SRYDDYDRY 116 Query: 132 RDD---------FYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRST 182 R +R FDY+ R PR P RPR + + + + + SRS Sbjct: 117 RRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSK 176 Query: 183 ASGSTGSK---LKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQ 234 ++ + SK K + ++ + + KT+ S + + E E++KK+ Sbjct: 177 SNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKE 231 >gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein G-T [Homo sapiens] Length = 392 Score = 43.5 bits (101), Expect = 2e-04 Identities = 52/196 (26%), Positives = 76/196 (38%), Gaps = 48/196 (24%) Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 73 ++FIG LN +K +EA F KYG+IV + K G+AFV + S A+AA Sbjct: 9 KLFIGGLNLETDEKA-LEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67 Query: 74 GENARVIAGQPLDINMAGEPKPYRPKPGNKRPLS---------------ALYRLESKEPF 118 N + + G+ + + A +P + G P S R S+ Sbjct: 68 DMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRRSPSRGGP 127 Query: 119 LSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKR---PRVAVTTTRRGKGVFSM 175 GGY D+D P RA +P+KR PR +R + Sbjct: 128 DDDGGYTADFDL-----------------RPSRAPMPMKRGPPPRRVGPPPKRA----AP 166 Query: 176 KGGSRSTASGSTGSKL 191 G +RS+ G G L Sbjct: 167 SGPARSSGGGMRGRAL 182 >gi|188219591 TIA1 protein isoform 2 [Homo sapiens] Length = 386 Score = 43.1 bits (100), Expect = 3e-04 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 23 VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSV------HKGYAFVQYMSERHARAAVAGEN 76 +++GNL+ + + + ++ +FS+ G C + + Y FV++ RHA AA+A N Sbjct: 9 LYVGNLSRDVTEALILQ-LFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67 Query: 77 ARVIAGQPLDINMAGEP 93 R I G+ + +N A P Sbjct: 68 GRKIMGKEVKVNWATTP 84 Score = 37.7 bits (86), Expect = 0.012 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 21/113 (18%) Query: 2 TGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVH--KGYAF 59 T + V N++ P N V+ G + + + +++ + FS +G+I+ V KGY+F Sbjct: 197 TKQLSYDEVVNQSSPS--NCTVYCGGVTSGLTEQL-MRQTFSPFGQIMEIRVFPDKGYSF 253 Query: 60 VQYMSERHARAAVAGENARVIAG---------QPLDI-------NMAGEPKPY 96 V++ S A A+ N I G + LD+ N G P+PY Sbjct: 254 VRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPY 306 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.313 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,971,818 Number of Sequences: 37866 Number of extensions: 590511 Number of successful extensions: 4197 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 128 Number of HSP's successfully gapped in prelim test: 308 Number of HSP's that attempted gapping in prelim test: 3623 Number of HSP's gapped (non-prelim): 842 length of query: 291 length of database: 18,247,518 effective HSP length: 101 effective length of query: 190 effective length of database: 14,423,052 effective search space: 2740379880 effective search space used: 2740379880 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.