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Search of human proteins with 154240712
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154240712 RALY RNA binding protein-like isoform 2 [Homo
sapiens]
(291 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens] 582 e-166
gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens] 582 e-166
gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens] 582 e-166
gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens] 582 e-166
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 283 1e-76
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a... 271 4e-73
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a... 271 4e-73
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b... 268 3e-72
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b... 268 3e-72
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho... 245 3e-65
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 244 6e-65
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom... 241 5e-64
gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ... 237 1e-62
gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc... 237 1e-62
gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom... 237 1e-62
gi|5454064 RNA binding motif protein 14 [Homo sapiens] 65 9e-11
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 49 7e-06
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 49 7e-06
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 49 7e-06
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 49 7e-06
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 45 8e-05
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 45 8e-05
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 45 8e-05
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 45 1e-04
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 45 1e-04
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 45 1e-04
gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 44 1e-04
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 44 1e-04
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 44 2e-04
gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 43 3e-04
>gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 582 bits (1500), Expect = e-166
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180
VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180
Query: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240
STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
Sbjct: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240
Query: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
Sbjct: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 582 bits (1500), Expect = e-166
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180
VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180
Query: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240
STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
Sbjct: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240
Query: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
Sbjct: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 582 bits (1500), Expect = e-166
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180
VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180
Query: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240
STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
Sbjct: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240
Query: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
Sbjct: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]
Length = 304
Score = 582 bits (1500), Expect = e-166
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
Sbjct: 14 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 73
Query: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
Sbjct: 74 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 133
Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180
VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
Sbjct: 134 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 193
Query: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240
STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
Sbjct: 194 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 253
Query: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
Sbjct: 254 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 283 bits (725), Expect = 1e-76
Identities = 153/236 (64%), Positives = 175/236 (74%), Gaps = 15/236 (6%)
Query: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109
Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
GY+FDYDYYRDDFY+RLFDY GR+ P P +P+KRPRV V RR K +K +
Sbjct: 110 -SGYIFDYDYYRDDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 168
Query: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233
RSTA + S KLKS ELQ IK ELTQIK+ ID+LL RLE+I +QKA + +KK
Sbjct: 169 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 224
>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 271 bits (694), Expect = 4e-73
Identities = 156/292 (53%), Positives = 196/292 (67%), Gaps = 18/292 (6%)
Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPF---LSVGGY 124
ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y ++ P L +
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122
Query: 125 VFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRS 181
DYD+ R D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R
Sbjct: 123 DLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRG 181
Query: 182 TASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVL 241
+ S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E
Sbjct: 182 S---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE---- 234
Query: 242 IQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
+E+ S + T + +EGG D D E D +++D +ED G + IK
Sbjct: 235 -EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 284
>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 271 bits (694), Expect = 4e-73
Identities = 156/292 (53%), Positives = 196/292 (67%), Gaps = 18/292 (6%)
Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPF---LSVGGY 124
ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y ++ P L +
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122
Query: 125 VFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRS 181
DYD+ R D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R
Sbjct: 123 DLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRG 181
Query: 182 TASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVL 241
+ S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E
Sbjct: 182 S---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE---- 234
Query: 242 IQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
+E+ S + T + +EGG D D E D +++D +ED G + IK
Sbjct: 235 -EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 284
>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 268 bits (686), Expect = 3e-72
Identities = 155/290 (53%), Positives = 193/290 (66%), Gaps = 27/290 (9%)
Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y G FD
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY------------GSSFD 110
Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
DY ++ D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R +
Sbjct: 111 LDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGS- 169
Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQ 243
S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E +
Sbjct: 170 --SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE-----E 222
Query: 244 EECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
E+ S + T + +EGG D D E D +++D +ED G + IK
Sbjct: 223 EQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 271
>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 268 bits (686), Expect = 3e-72
Identities = 155/290 (53%), Positives = 193/290 (66%), Gaps = 27/290 (9%)
Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y G FD
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY------------GSSFD 110
Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
DY ++ D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R +
Sbjct: 111 LDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGS- 169
Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQ 243
S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E +
Sbjct: 170 --SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE-----E 222
Query: 244 EECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
E+ S + T + +EGG D D E D +++D +ED G + IK
Sbjct: 223 EQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 271
>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
sapiens]
Length = 293
Score = 245 bits (626), Expect = 3e-65
Identities = 144/289 (49%), Positives = 185/289 (64%), Gaps = 25/289 (8%)
Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++
Sbjct: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
ARAAVAGE+ R+IA Q +DIN+A EPK R G KR + +Y G FD
Sbjct: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
DY ++ D+Y+ ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R +
Sbjct: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGS- 169
Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+Q K E E + + EE
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223
Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
Q + + + +EGG + D E D +++D +ED G + IK
Sbjct: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDVNEDQGDDQLELIK 271
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 244 bits (623), Expect = 6e-65
Identities = 140/236 (59%), Positives = 160/236 (67%), Gaps = 31/236 (13%)
Query: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109
Query: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
RLFDY GR+ P P +P+KRPRV V RR K +K +
Sbjct: 110 -----------------RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 152
Query: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233
RSTA + S KLKS ELQ IK ELTQIK+ ID+LL RLE+I +QKA + +KK
Sbjct: 153 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 208
>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 241 bits (615), Expect = 5e-64
Identities = 143/289 (49%), Positives = 182/289 (62%), Gaps = 25/289 (8%)
Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++
Sbjct: 3 SNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
ARAAVAGE+ R+IA Q IN+A EPK R G KR + +Y G FD
Sbjct: 63 ARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
DY ++ D+Y+ ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R +
Sbjct: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169
Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+Q K E E + + EE
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223
Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
Q + + + +EGG + D E D +++D +ED G IK
Sbjct: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDDNEDQGDNQLHLIK 271
>gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein
C-like [Homo sapiens]
Length = 293
Score = 237 bits (604), Expect = 1e-62
Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%)
Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++
Sbjct: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
ARAAVAGE+ R+IA Q +DIN+A EPK R G KR + +Y G FD
Sbjct: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
DY + D+Y ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R +
Sbjct: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169
Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+ K E + + EE
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223
Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 288
Q S+ + +EGG D EE ++D ++ G ++L L
Sbjct: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269
>gi|239752620 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein C-like [Homo sapiens]
Length = 293
Score = 237 bits (604), Expect = 1e-62
Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%)
Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++
Sbjct: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
ARAAVAGE+ R+IA Q +DIN+A EPK R G KR + +Y G FD
Sbjct: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
DY + D+Y ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R +
Sbjct: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169
Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+ K E + + EE
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223
Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 288
Q S+ + +EGG D EE ++D ++ G ++L L
Sbjct: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269
>gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 237 bits (604), Expect = 1e-62
Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%)
Query: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++
Sbjct: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
Query: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
ARAAVAGE+ R+IA Q +DIN+A EPK R G KR + +Y G FD
Sbjct: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
Query: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
DY + D+Y ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R +
Sbjct: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169
Query: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+ K E + + EE
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223
Query: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 288
Q S+ + +EGG D EE ++D ++ G ++L L
Sbjct: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269
>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
Length = 669
Score = 64.7 bits (156), Expect = 9e-11
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 29/200 (14%)
Query: 10 VTNKNDPKSINS-RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHA 68
V + P+ +N+ ++F+GN++ A + ++ ++F + G+++ C V K YAFV E A
Sbjct: 67 VVEMSRPRPLNTWKIFVGNVSAACTSQ-ELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
Query: 69 RAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEP------FLSVG 122
+AA+A N + + G+ +++ ++ K + PG L+ ++K+P F G
Sbjct: 126 KAAIAQLNGKEVKGKRINVELS--TKGQKKGPG----LAVQSGDKTKKPGAGDTAFPGTG 179
Query: 123 GYVFDYDYYRDDFYNRL--FDYHGRVPPPP---RAVIPLKR---------PRVAVTTTRR 168
G+ +D Y+ F N FD R P PP R PL+R P A T R
Sbjct: 180 GFSATFD-YQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATYR 238
Query: 169 GKGVFSMKGGSRSTASGSTG 188
+ S+ R+ S S G
Sbjct: 239 AQPSVSLGAAYRAQPSASLG 258
Score = 41.6 bits (96), Expect = 8e-04
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHA-RAAVAGENARVI 80
++F+GN++ A ++ A+F+ YG ++ C+V K +AFV A RA A +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 81 AGQPLDINMAGEPKPYRPKPGN 102
G+ L + M+ RP+P N
Sbjct: 62 PGRALVVEMS------RPRPLN 77
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 48.5 bits (114), Expect = 7e-06
Identities = 53/221 (23%), Positives = 79/221 (35%), Gaps = 70/221 (31%)
Query: 23 VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAG 82
+F+ NL T + +++ +E FS++GK+ K YAFV + A A+ N + I G
Sbjct: 245 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 303
Query: 83 QPLDINMAGEPKP---------------------YRPKPGNKRPLSALYRLESKEPFLSV 121
+ ++I +A P Y P P P+ R +
Sbjct: 304 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------ 357
Query: 122 GGYVFDYDY-----YRDDFYNRLFDYH---------------------------GRVPPP 149
GGY + DY Y DD+Y +DYH GR PP
Sbjct: 358 GGYGYPPDYYGYEDYYDDYYG--YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 415
Query: 150 PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSK 190
P PR RG+ +S +G GS G +
Sbjct: 416 P--------PRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGR 448
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 48.5 bits (114), Expect = 7e-06
Identities = 53/221 (23%), Positives = 79/221 (35%), Gaps = 70/221 (31%)
Query: 23 VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAG 82
+F+ NL T + +++ +E FS++GK+ K YAFV + A A+ N + I G
Sbjct: 346 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 404
Query: 83 QPLDINMAGEPKP---------------------YRPKPGNKRPLSALYRLESKEPFLSV 121
+ ++I +A P Y P P P+ R +
Sbjct: 405 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------ 458
Query: 122 GGYVFDYDY-----YRDDFYNRLFDYH---------------------------GRVPPP 149
GGY + DY Y DD+Y +DYH GR PP
Sbjct: 459 GGYGYPPDYYGYEDYYDDYYG--YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 516
Query: 150 PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSK 190
P PR RG+ +S +G GS G +
Sbjct: 517 P--------PRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGR 549
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 48.5 bits (114), Expect = 7e-06
Identities = 53/221 (23%), Positives = 79/221 (35%), Gaps = 70/221 (31%)
Query: 23 VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAG 82
+F+ NL T + +++ +E FS++GK+ K YAFV + A A+ N + I G
Sbjct: 242 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300
Query: 83 QPLDINMAGEPKP---------------------YRPKPGNKRPLSALYRLESKEPFLSV 121
+ ++I +A P Y P P P+ R +
Sbjct: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------ 354
Query: 122 GGYVFDYDY-----YRDDFYNRLFDYH---------------------------GRVPPP 149
GGY + DY Y DD+Y +DYH GR PP
Sbjct: 355 GGYGYPPDYYGYEDYYDDYYG--YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 412
Query: 150 PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSK 190
P PR RG+ +S +G GS G +
Sbjct: 413 P--------PRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGR 445
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 48.5 bits (114), Expect = 7e-06
Identities = 53/221 (23%), Positives = 79/221 (35%), Gaps = 70/221 (31%)
Query: 23 VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAG 82
+F+ NL T + +++ +E FS++GK+ K YAFV + A A+ N + I G
Sbjct: 343 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 401
Query: 83 QPLDINMAGEPKP---------------------YRPKPGNKRPLSALYRLESKEPFLSV 121
+ ++I +A P Y P P P+ R +
Sbjct: 402 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------ 455
Query: 122 GGYVFDYDY-----YRDDFYNRLFDYH---------------------------GRVPPP 149
GGY + DY Y DD+Y +DYH GR PP
Sbjct: 456 GGYGYPPDYYGYEDYYDDYYG--YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 513
Query: 150 PRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGSTGSK 190
P PR RG+ +S +G GS G +
Sbjct: 514 P--------PRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGR 546
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 45.1 bits (105), Expect = 8e-05
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 73
++FIG LNT +K +E +F KYG+IV + K G+AFV + S A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 74 GENARVIAGQPLDINMAGEPKPYRPKPGNKRP 105
N + + G+ + + A +P R + G P
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHGPPPP 99
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 45.1 bits (105), Expect = 8e-05
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 73
++FIG LNT +K +E +F KYG+IV + K G+AFV + S A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 74 GENARVIAGQPLDINMAGEPKPYRPKPGNKRP 105
N + + G+ + + A +P R + G P
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHGPPPP 99
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 45.1 bits (105), Expect = 8e-05
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 73
++FIG LNT +K +EA+F KYG+IV + K G+AFV + S A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 74 GENARVIAGQPLDINMAGEP 93
N + + G+ + + A +P
Sbjct: 68 DMNGKSLDGKAIKVEQATKP 87
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 44.7 bits (104), Expect = 1e-04
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIV------GCSVHK--GYAFVQYMSERHARAAVA 73
+ FIG LNT KK +EA+F KYG+IV C +K G+AF+ + A+ A
Sbjct: 9 KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 74 GENARVIAGQPLDINMAGEP 93
N + + G+ + + A +P
Sbjct: 68 DMNGKSLDGKAIKVEQATKP 87
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 44.7 bits (104), Expect = 1e-04
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIV------GCSVHK--GYAFVQYMSERHARAAVA 73
+ FIG LNT KK +EA+F KYG+IV C +K G+AF+ + A+ A
Sbjct: 9 KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 74 GENARVIAGQPLDINMAGEP 93
N + + G+ + + A +P
Sbjct: 68 DMNGKSLDGKAIKVEQATKP 87
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 44.7 bits (104), Expect = 1e-04
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIA 81
RV+IG L+ + +K DI+ FS YG+++ + GY FV++ R A AV N + +
Sbjct: 3 RVYIGRLSYNVREK-DIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC 61
Query: 82 GQPLDINMAGEPK 94
G+ + + A P+
Sbjct: 62 GERVIVEHARGPR 74
>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
Length = 375
Score = 44.3 bits (103), Expect = 1e-04
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 23 VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSV------HKGYAFVQYMSERHARAAVAGEN 76
+++GNL+ + + + ++ +FS+ G C + + Y FV++ RHA AA+A N
Sbjct: 9 LYVGNLSRDVTEALILQ-LFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67
Query: 77 ARVIAGQPLDINMAGEPKPYRPKPGN 102
R I G+ + +N A P + N
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSN 93
Score = 37.7 bits (86), Expect = 0.012
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 21/113 (18%)
Query: 2 TGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVH--KGYAF 59
T + V N++ P N V+ G + + + +++ + FS +G+I+ V KGY+F
Sbjct: 186 TKQLSYDEVVNQSSPS--NCTVYCGGVTSGLTEQL-MRQTFSPFGQIMEIRVFPDKGYSF 242
Query: 60 VQYMSERHARAAVAGENARVIAG---------QPLDI-------NMAGEPKPY 96
V++ S A A+ N I G + LD+ N G P+PY
Sbjct: 243 VRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPY 295
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 44.3 bits (103), Expect = 1e-04
Identities = 53/235 (22%), Positives = 98/235 (41%), Gaps = 32/235 (13%)
Query: 20 NSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVH--------KGYAFVQYMSERHARAA 71
N+ +F+ N+ + D+ F +YG IV V +G+A+VQ+ R A A
Sbjct: 9 NTSLFVRNVADD-TRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 72 VAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDYY 131
+ + + I G+ ++I A G+++ + + E + + S DYD Y
Sbjct: 68 LHNLDRKWICGRQIEIQFA---------QGDRKTPNQMKAKEGRNVYSS--SRYDDYDRY 116
Query: 132 RDD---------FYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRST 182
R +R FDY+ R PR P RPR + + + + + SRS
Sbjct: 117 RRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSK 176
Query: 183 ASGSTGSK---LKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQ 234
++ + SK K + ++ + + KT+ S + + E E++KK+
Sbjct: 177 SNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKE 231
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 43.5 bits (101), Expect = 2e-04
Identities = 52/196 (26%), Positives = 76/196 (38%), Gaps = 48/196 (24%)
Query: 22 RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 73
++FIG LN +K +EA F KYG+IV + K G+AFV + S A+AA
Sbjct: 9 KLFIGGLNLETDEKA-LEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
Query: 74 GENARVIAGQPLDINMAGEPKPYRPKPGNKRPLS---------------ALYRLESKEPF 118
N + + G+ + + A +P + G P S R S+
Sbjct: 68 DMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRRSPSRGGP 127
Query: 119 LSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKR---PRVAVTTTRRGKGVFSM 175
GGY D+D P RA +P+KR PR +R +
Sbjct: 128 DDDGGYTADFDL-----------------RPSRAPMPMKRGPPPRRVGPPPKRA----AP 166
Query: 176 KGGSRSTASGSTGSKL 191
G +RS+ G G L
Sbjct: 167 SGPARSSGGGMRGRAL 182
>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
Length = 386
Score = 43.1 bits (100), Expect = 3e-04
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 23 VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSV------HKGYAFVQYMSERHARAAVAGEN 76
+++GNL+ + + + ++ +FS+ G C + + Y FV++ RHA AA+A N
Sbjct: 9 LYVGNLSRDVTEALILQ-LFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67
Query: 77 ARVIAGQPLDINMAGEP 93
R I G+ + +N A P
Sbjct: 68 GRKIMGKEVKVNWATTP 84
Score = 37.7 bits (86), Expect = 0.012
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 21/113 (18%)
Query: 2 TGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVH--KGYAF 59
T + V N++ P N V+ G + + + +++ + FS +G+I+ V KGY+F
Sbjct: 197 TKQLSYDEVVNQSSPS--NCTVYCGGVTSGLTEQL-MRQTFSPFGQIMEIRVFPDKGYSF 253
Query: 60 VQYMSERHARAAVAGENARVIAG---------QPLDI-------NMAGEPKPY 96
V++ S A A+ N I G + LD+ N G P+PY
Sbjct: 254 VRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPY 306
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,971,818
Number of Sequences: 37866
Number of extensions: 590511
Number of successful extensions: 4197
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 308
Number of HSP's that attempted gapping in prelim test: 3623
Number of HSP's gapped (non-prelim): 842
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.