Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 149944524
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|149944524 hypothetical protein LOC400591 [Homo sapiens]
(167 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149944524 hypothetical protein LOC400591 [Homo sapiens] 342 9e-95
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 31 0.43
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 30 0.74
gi|4885075 atonal homolog 1 [Homo sapiens] 30 0.74
gi|87196600 polyserase 3 [Homo sapiens] 30 0.96
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|239753576 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 30 1.3
gi|239748084 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 30 1.3
gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H... 29 1.6
gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H... 29 1.6
gi|118918429 NOD3 protein [Homo sapiens] 29 2.1
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ... 28 2.8
gi|39812019 amino-terminal enhancer of split isoform a [Homo sap... 28 2.8
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 28 3.7
gi|239756643 PREDICTED: hypothetical protein [Homo sapiens] 28 3.7
gi|239752953 PREDICTED: hypothetical protein [Homo sapiens] 28 3.7
gi|239751430 PREDICTED: hypothetical protein [Homo sapiens] 28 3.7
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 28 3.7
gi|239747510 PREDICTED: hypothetical protein [Homo sapiens] 28 3.7
gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo ... 28 3.7
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 28 3.7
gi|239741388 PREDICTED: hypothetical protein XP_002342191 [Homo ... 28 3.7
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 28 3.7
gi|52486265 paraneoplastic antigen MA1 [Homo sapiens] 28 3.7
gi|29029632 anaplastic lymphoma kinase [Homo sapiens] 27 6.2
gi|239754438 PREDICTED: hypothetical protein [Homo sapiens] 27 6.2
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 27 6.2
gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo ... 27 6.2
>gi|149944524 hypothetical protein LOC400591 [Homo sapiens]
Length = 167
Score = 342 bits (877), Expect = 9e-95
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MFDFSFPTPASAGTRMGPASCGGRSLHLPQLRFSRVDATAVTDVPFQRMHAPHRAPEVFC 60
MFDFSFPTPASAGTRMGPASCGGRSLHLPQLRFSRVDATAVTDVPFQRMHAPHRAPEVFC
Sbjct: 1 MFDFSFPTPASAGTRMGPASCGGRSLHLPQLRFSRVDATAVTDVPFQRMHAPHRAPEVFC 60
Query: 61 SRSSRGAGRGHPTPTPRVRWALAGNQPRCCAQLLSGRGGSGAQLRAGWVRGAAVGNLFIL 120
SRSSRGAGRGHPTPTPRVRWALAGNQPRCCAQLLSGRGGSGAQLRAGWVRGAAVGNLFIL
Sbjct: 61 SRSSRGAGRGHPTPTPRVRWALAGNQPRCCAQLLSGRGGSGAQLRAGWVRGAAVGNLFIL 120
Query: 121 LLGKEDGEEEGTVLSYSSMVHISNITGIVGTTVSRTKPALVLMELTF 167
LLGKEDGEEEGTVLSYSSMVHISNITGIVGTTVSRTKPALVLMELTF
Sbjct: 121 LLGKEDGEEEGTVLSYSSMVHISNITGIVGTTVSRTKPALVLMELTF 167
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo
sapiens]
Length = 2161
Score = 31.2 bits (69), Expect = 0.43
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 75 TPRVRWALAGNQPRCCAQLLSGRGGSGAQLRAGW-------VRGAAVGNLFILLLGKEDG 127
TP A+ G PRCC LL R G GW RG + +L G E G
Sbjct: 282 TPLFHTAMVGGDPRCCELLLFNRAQLGIADENGWQEIHQACQRGHSQHLEHLLFYGAEPG 341
Query: 128 EEEGT 132
+ +
Sbjct: 342 AQNAS 346
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 30.4 bits (67), Expect = 0.74
Identities = 36/142 (25%), Positives = 48/142 (33%), Gaps = 22/142 (15%)
Query: 8 TPASAGTRMGPASCGGRSLHLP---QLRFSRVDATAVTDVPFQRMHAPHR-----APEVF 59
+P + GTR GPA G + P +L D D F +R F
Sbjct: 55 SPGANGTRTGPAGGAGAAARAPPPAELCHGYYDVMGQYDATFNCSTGSYRFCCGTCHYRF 114
Query: 60 C-----SRSSRGAGRGHPTPTPRVRWALAGNQPRCCAQLLSGRGGSGAQLRAGWVRGAAV 114
C R ++ + + TP RWA A G GG +AGW+ G
Sbjct: 115 CCEHRHMRLAQASCSNYDTP----RWATTPPPLAGGAGGAGGAGGGPGPGQAGWLEGGRT 170
Query: 115 GNLFILLLGKEDGEEEGTVLSY 136
G G GE G +Y
Sbjct: 171 GG-----AGGRGGEGPGGSTAY 187
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 30.4 bits (67), Expect = 0.74
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 9 PASAGTRMG-PASCGGRSLHLPQLRFSRVDATAVTDVPFQRMHAP 52
P S TR PAS GG S+ L L FS + +A+T + Q+ +P
Sbjct: 269 PGSCRTRFSAPASAGGYSVQLDALHFSTFEDSALTAMMAQKNLSP 313
>gi|87196600 polyserase 3 [Homo sapiens]
Length = 553
Score = 30.0 bits (66), Expect = 0.96
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 44 VPFQRMHAPHRAPEVFCSRSSRGAGRGHPTPTPRVRWALAGNQPRCCAQLLSGRGGSGAQ 103
+P+ H P R+ GAG P L G PR C++L + GG G+
Sbjct: 403 LPYPDHHLPDGERGWVLGRARPGAGISSLQTVPVT---LLG--PRACSRLHAAPGGDGSP 457
Query: 104 LRAGWVRGAAVGNL 117
+ G V +AVG L
Sbjct: 458 ILPGMVCTSAVGEL 471
>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 316
Score = 29.6 bits (65), Expect = 1.3
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 61 SRSSRGAGRGHPTPTPRVRWALAGNQPRCCAQ-----LLSGRGGSGAQLR 105
SRS RGAG G P R AG RCC + +G GG GA+ R
Sbjct: 76 SRSPRGAGPGAAGPRAAGRGG-AGGGGRCCTRGRGRFPCAGSGGRGARSR 124
>gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 29.6 bits (65), Expect = 1.3
Identities = 35/118 (29%), Positives = 44/118 (37%), Gaps = 24/118 (20%)
Query: 7 PTPASAGTRMG-----PASCGG---RSLHLPQLRFSRVDATAVTDVPFQRMHAPHRAPEV 58
P+ A A T G P CGG R L QL + V R P R P+
Sbjct: 237 PSGAEAATLAGVRLPPPPGCGGSGARGLRPEQLW---------SHVQHARCPQPGRGPD- 286
Query: 59 FCSRSSRGAGRGHPTPTPRVRWALAGNQPRCCAQLL--SGRGGSGAQLRAGWVRGAAV 114
+S AGR P V A G R + SGR G+ +AGW+ A +
Sbjct: 287 ----ASGAAGRSRAPPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTATL 340
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 29.6 bits (65), Expect = 1.3
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 61 SRSSRGAGRGHPTPTPRVRWALAGNQPRCCAQ-----LLSGRGGSGAQLR 105
SRS RGAG G P R AG RCC + +G GG GA+ R
Sbjct: 76 SRSPRGAGPGAAGPRAAGRGG-AGGGGRCCTRGRGRFPCAGSGGRGARSR 124
>gi|239748084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 29.6 bits (65), Expect = 1.3
Identities = 35/118 (29%), Positives = 44/118 (37%), Gaps = 24/118 (20%)
Query: 7 PTPASAGTRMG-----PASCGG---RSLHLPQLRFSRVDATAVTDVPFQRMHAPHRAPEV 58
P+ A A T G P CGG R L QL + V R P R P+
Sbjct: 237 PSGAEAATLAGVRLPPPPGCGGSGARGLRPEQLW---------SHVQHARCPQPGRGPD- 286
Query: 59 FCSRSSRGAGRGHPTPTPRVRWALAGNQPRCCAQLL--SGRGGSGAQLRAGWVRGAAV 114
+S AGR P V A G R + SGR G+ +AGW+ A +
Sbjct: 287 ----ASGAAGRSRAPPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTATL 340
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 29.6 bits (65), Expect = 1.3
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 61 SRSSRGAGRGHPTPTPRVRWALAGNQPRCCAQ-----LLSGRGGSGAQLR 105
SRS RGAG G P R AG RCC + +G GG GA+ R
Sbjct: 76 SRSPRGAGPGAAGPRAAGRGG-AGGGGRCCTRGRGRFPCAGSGGRGARSR 124
>gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform b [Homo sapiens]
Length = 2347
Score = 29.3 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 9 PASAGTRMGPASCGGRSLHLPQLRFSRVDATAVTDVPF 46
PA+ G R G ASC L +P F +D + PF
Sbjct: 2238 PAAKGERWGQASCRAEHLTVPSFAFEPLDLGVPSGDPF 2275
>gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform a [Homo sapiens]
Length = 2353
Score = 29.3 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 9 PASAGTRMGPASCGGRSLHLPQLRFSRVDATAVTDVPF 46
PA+ G R G ASC L +P F +D + PF
Sbjct: 2244 PAAKGERWGQASCRAEHLTVPSFAFEPLDLGVPSGDPF 2281
>gi|118918429 NOD3 protein [Homo sapiens]
Length = 1065
Score = 28.9 bits (63), Expect = 2.1
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 62 RSSRGAGRGHPTPTPRVRWALAGNQPRCCAQLLSGRGGSGAQ 103
R+ R AG+GH T +P Q + LL+G+G G+Q
Sbjct: 7 RTGREAGQGHGTGSP-------AEQVKALMDLLAGKGSQGSQ 41
>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
sapiens]
Length = 2923
Score = 28.5 bits (62), Expect = 2.8
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 65 RGAGRGHPTPTPR----------VRWALAGNQPRCCAQLLS-GRGGSGAQLRAGWVRGAA 113
R G P PTP + L G+Q C L S GRG SGA GW+ ++
Sbjct: 2 RSPATGVPLPTPPPPLLLLLLLLLPPPLLGDQVGPCRSLGSRGRGSSGACAPMGWLCPSS 61
Query: 114 VGNLFI 119
NL++
Sbjct: 62 ASNLWL 67
>gi|39812019 amino-terminal enhancer of split isoform a [Homo
sapiens]
Length = 264
Score = 28.5 bits (62), Expect = 2.8
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 17 GPASCGGRSLHLP-QLRFSRVDATAVTDVPFQRMHAPHRAPEVFCSR 62
GPA C G S HLP QL+F+ D+ FQ + A + + ++ C +
Sbjct: 71 GPAGCRGSS-HLPQQLKFTTSDSCDRIKDEFQLLQAQYHSLKLECDK 116
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 28.1 bits (61), Expect = 3.7
Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 22 GGRSLH--LPQLRFSRV---DATAVTDVPFQRMHAPHRAPEVFCSRSSRGAGRGHPTPTP 76
GGR L LP RFS A T V +R AP +P R GAGRG P
Sbjct: 93 GGRKLRRWLPPRRFSNFCCRSPCAQTAVRRRRRRAP--SPRGAGWREGAGAGRGTPATMA 150
Query: 77 RVRWA 81
WA
Sbjct: 151 GGEWA 155
>gi|239756643 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 28.1 bits (61), Expect = 3.7
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 60 CSRSSRGAGRGHPTPTPRVRWALAGNQPRCCAQLLSGRGG 99
C R +RG R P P PR W +PR + L G G
Sbjct: 105 CGRRARGDPRPWPAPPPRAHWP---PRPRPASSLAVGLRG 141
>gi|239752953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 28.1 bits (61), Expect = 3.7
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 34 SRVDATAVTDVPFQRMHAPHRAPEVF-CSRSSRGAGRGHPTPTPRVRWALAGNQP 87
S+ D AV + +R H P AP V+ C+ GR H T A A P
Sbjct: 123 SKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSP 177
>gi|239751430 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 28.1 bits (61), Expect = 3.7
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 8 TPASAGTRMGPASCGGRSL--HLPQLRFSRVDATAVTDVPFQRMHAPHRAPEVFCSRSSR 65
T A+A GP GRS P+ ++ A + +R H A E RS
Sbjct: 142 TWAAAAVAAGP----GRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGA 197
Query: 66 GAGRGHPTPTPRVRWALAGNQPRCCAQLLSGRGGSGAQLRAG 107
A RG + R R AL +L SGRG G AG
Sbjct: 198 AAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAG 239
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 28.1 bits (61), Expect = 3.7
Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 22 GGRSLH--LPQLRFSRV---DATAVTDVPFQRMHAPHRAPEVFCSRSSRGAGRGHPTPTP 76
GGR L LP RFS A T V +R AP +P R GAGRG P
Sbjct: 93 GGRKLRRWLPPRRFSNFCCRSPCAQTAVRRRRRRAP--SPRGAGWREGAGAGRGTPATMA 150
Query: 77 RVRWA 81
WA
Sbjct: 151 GGEWA 155
>gi|239747510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 28.1 bits (61), Expect = 3.7
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 34 SRVDATAVTDVPFQRMHAPHRAPEVF-CSRSSRGAGRGHPTPTPRVRWALAGNQP 87
S+ D AV + +R H P AP V+ C+ GR H T A A P
Sbjct: 123 SKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSP 177
>gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo
sapiens]
Length = 303
Score = 28.1 bits (61), Expect = 3.7
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 8 TPASAGTRMGPASCGGRSL--HLPQLRFSRVDATAVTDVPFQRMHAPHRAPEVFCSRSSR 65
T A+A GP GRS P+ ++ A + +R H A E RS
Sbjct: 142 TWAAAAVAAGP----GRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGA 197
Query: 66 GAGRGHPTPTPRVRWALAGNQPRCCAQLLSGRGGSGAQLRAG 107
A RG + R R AL +L SGRG G AG
Sbjct: 198 AAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAG 239
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 28.1 bits (61), Expect = 3.7
Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 22 GGRSLH--LPQLRFSRV---DATAVTDVPFQRMHAPHRAPEVFCSRSSRGAGRGHPTPTP 76
GGR L LP RFS A T V +R AP +P R GAGRG P
Sbjct: 93 GGRKLRRWLPPRRFSNFCCRSPCAQTAVRRRRRRAP--SPRGAGWREGAGAGRGTPATMA 150
Query: 77 RVRWA 81
WA
Sbjct: 151 GGEWA 155
>gi|239741388 PREDICTED: hypothetical protein XP_002342191 [Homo
sapiens]
Length = 180
Score = 28.1 bits (61), Expect = 3.7
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 34 SRVDATAVTDVPFQRMHAPHRAPEVF-CSRSSRGAGRGHPTPTPRVRWALAGNQP 87
S+ D AV + +R H P AP V+ C+ GR H T A A P
Sbjct: 123 SKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSP 177
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 28.1 bits (61), Expect = 3.7
Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 61 SRSSRGAGRGHPTPTPRVRWALAGNQP 87
SR SR AG G P+P P VR A AG P
Sbjct: 667 SRGSRAAG-GAPSPPPPVRRASAGPAP 692
>gi|52486265 paraneoplastic antigen MA1 [Homo sapiens]
Length = 353
Score = 28.1 bits (61), Expect = 3.7
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 11/60 (18%)
Query: 85 NQPRCCAQLLSGRGGSGAQLRAGWVRGAAVG---NLFILLL------GKEDGEE-EGTVL 134
NQ R Q+++G SGA R W+ GA G NLF LL+ KE+ EE E T+L
Sbjct: 287 NQARL-EQVIAGANHSGAIRRQLWLTGAGEGPAPNLFQLLVQIREEEAKEEEEEAEATLL 345
>gi|29029632 anaplastic lymphoma kinase [Homo sapiens]
Length = 1620
Score = 27.3 bits (59), Expect = 6.2
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 100 SGAQLRAGW-VRGAAVGNLFILLLGKEDGEEEGTVL 134
S +LR W +RG GN+ ++L+ + G+E+G ++
Sbjct: 546 SPCELRMSWLIRGVLRGNVSLVLVENKTGKEQGRMV 581
>gi|239754438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 709
Score = 27.3 bits (59), Expect = 6.2
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 19/118 (16%)
Query: 57 EVFCSRSSRGAGRGHPTPTPRVRWALAGNQPRCC----AQLLSGRG-------------- 98
E C +G+G P+ + W + + CC A LL RG
Sbjct: 371 ECSCLAVVVASGKGSPSASRGSNWGESFSW-HCCTATAAALLLQRGDSSASGGAAGPPLS 429
Query: 99 GSGAQLRAGWVRGAAVGNLFILLLGKEDGEEEGTVLSYSSMVHISNITGIVGTTVSRT 156
GS G+ RG + + GKED E++ + ++SS S++ T +T
Sbjct: 430 GSSPSASRGFSRGEPSSLVSVCFRGKEDEEKKPVLAAFSSRTVRSHLGSTSSTCNMKT 487
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 27.3 bits (59), Expect = 6.2
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 87 PRCCAQLLSGRGGSGAQLRAGWVRGAAVGNLFILLLGKE 125
PR Q SG GGSG Q GW G +V I + G+E
Sbjct: 256 PRPGMQKRSG-GGSGGQRAGGWQPGPSVRESCIDMAGRE 293
>gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo
sapiens]
Length = 709
Score = 27.3 bits (59), Expect = 6.2
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 19/118 (16%)
Query: 57 EVFCSRSSRGAGRGHPTPTPRVRWALAGNQPRCC----AQLLSGRG-------------- 98
E C +G+G P+ + W + + CC A LL RG
Sbjct: 371 ECSCLAVVVASGKGSPSASRGSNWGESFSW-HCCTATAAALLLQRGDSSASGGAAGPPLS 429
Query: 99 GSGAQLRAGWVRGAAVGNLFILLLGKEDGEEEGTVLSYSSMVHISNITGIVGTTVSRT 156
GS G+ RG + + GKED E++ + ++SS S++ T +T
Sbjct: 430 GSSPSASRGFSRGEPSSLVSVCFRGKEDEEKKPVLAAFSSRTVRSHLGSTSSTCNMKT 487
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,429,180
Number of Sequences: 37866
Number of extensions: 377615
Number of successful extensions: 1062
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1043
Number of HSP's gapped (non-prelim): 50
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.