Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289408 Sequence: fasta or formatted (382aa) NCBI GI: 239751929
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {382aa} PREDICTED: hypothetical protein XP_002344217
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         42           3
 C cysteine            2.4          9           1
 D aspartate           2.4          9           1
 E glutamate           2.9         11           2
 F phenylalanine       1.0          4           1
 G glycine            15.4         59           3
 H histidine           2.9         11           1
 I isoleucine          0.3          1           1
 K lysine              2.1          8           2
 L leucine             6.3         24           1
 M methionine          1.0          4           1
 N asparagine          0.8          3           1
 P proline            12.3         47           2
 Q glutamine           4.5         17           1
 R arginine           18.6         71           5
 S serine              6.5         25           2
 T threonine           3.9         15           1
 V valine              4.5         17           2
 W tryptophan          1.0          4           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289408          1.000   PREDICTED: hypothetical protein XP_002344217 
LOC100291908          0.275   PREDICTED: hypothetical protein XP_002345432 
FLJ37078              0.045   hypothetical protein LOC222183 
LOC100292370          0.034   PREDICTED: hypothetical protein 
SAMD1                 0.034   sterile alpha motif domain containing 1 
LOC100292122          0.031   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.031   PREDICTED: hypothetical protein XP_002344191 
SRRM2                 0.031   splicing coactivator subunit SRm300 
PPP1R10               0.030   protein phosphatase 1, regulatory subunit 10 
DACT3                 0.030   thymus expressed gene 3-like 
LOC100130360          0.028   PREDICTED: hypothetical protein 
SFPQ                  0.028   splicing factor proline/glutamine rich (polypyrimidin...
SRRM1                 0.028   serine/arginine repetitive matrix 1 
GGN                   0.028   gametogenetin 
LOC645321             0.028   PREDICTED: hypothetical protein 
LOC645321             0.028   PREDICTED: hypothetical protein 
IRS4                  0.027   insulin receptor substrate 4 
LOC338758             0.027   PREDICTED: hypothetical protein 
LOC728767             0.027   PREDICTED: hypothetical protein 
LOC338758             0.027   PREDICTED: hypothetical protein 
LOC728767             0.027   PREDICTED: hypothetical protein 
LOC338758             0.027   PREDICTED: hypothetical protein 
CXorf67               0.027   hypothetical protein LOC340602 
COL7A1                0.027   alpha 1 type VII collagen precursor 
SCARF2                0.027   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.027   scavenger receptor class F, member 2 isoform 2 [Homo...
LOC643355             0.026   PREDICTED: hypothetical protein 
LOC100132345          0.026   PREDICTED: hypothetical protein 
LOC646509             0.026   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press