Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: XPO4 Sequence: fasta or formatted (1151aa) NCBI GI: 148886661
Description:

exportin 4

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         80           3
 C cysteine            1.9         22           1
 D aspartate           4.6         53           2
 E glutamate           8.0         92           4
 F phenylalanine       4.6         53           2
 G glycine             3.6         42           2
 H histidine           2.3         26           1
 I isoleucine          5.6         65           2
 K lysine              4.1         47           1
 L leucine            13.8        159           3
 M methionine          2.8         32           2
 N asparagine          4.1         47           2
 P proline             3.5         40           2
 Q glutamine           6.3         73           3
 R arginine            4.0         46           2
 S serine              8.1         93           4
 T threonine           5.6         64           2
 V valine              6.6         76           2
 W tryptophan          1.0         12           2
 Y tyrosine            2.5         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   exportin 4 
XPO7                  0.040   exportin 7 isoform c 
XPO7                  0.040   exportin 7 isoform b 
XPO7                  0.039   exportin 7 isoform a 
RANBP17               0.021   RAN binding protein 17 
HLTF                  0.005   helicase-like transcription factor 
HLTF                  0.005   helicase-like transcription factor 
UBR4                  0.005   retinoblastoma-associated factor 600 
PRKDC                 0.005   protein kinase, DNA-activated, catalytic polypeptid...
PRKDC                 0.005   protein kinase, DNA-activated, catalytic polypeptide...
LOC731751             0.005   PREDICTED: similar to protein kinase, DNA-activated...
SYNE2                 0.005   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.005   spectrin repeat containing, nuclear envelope 2 isof...
XPO6                  0.005   exportin 6 
IPO13                 0.004   importin 13 
FHDC1                 0.003   FH2 domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press