TAF4B 4715

Name: TAF4B	Sequence: fasta or formatted (862aa)		NCBI GI: 148792970
Description: TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa		Referenced in: RNA Polymerase and General Transcription Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.8 76 2 C cysteine 1.6 14 1 D aspartate 2.1 18 2 E glutamate 4.8 41 2 F phenylalanine 1.4 12 1 G glycine 5.0 43 2 H histidine 0.8 7 1 I isoleucine 4.9 42 2 K lysine 7.2 62 2 L leucine 10.4 90 2 M methionine 1.5 13 1 N asparagine 3.8 33 1 P proline 8.2 71 2 Q glutamine 6.5 56 2 R arginine 3.2 28 1 S serine 9.5 82 3 T threonine 10.2 88 3 V valine 9.4 81 2 W tryptophan 0.0 0 0 Y tyrosine 0.6 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 TAF4b RNA polymerase II, TATA box binding protein (... TAF4 0.201 TBP-associated factor 4 MUC17 0.035 mucin 17 MUC2 0.028 mucin 2 precursor MUC5B 0.024 mucin 5, subtype B, tracheobronchial BPTF 0.024 bromodomain PHD finger transcription factor isoform ... MUC4 0.023 mucin 4 isoform a MUC3A 0.023 PREDICTED: mucin 3A, intestinal HCFC1 0.023 host cell factor 1 ATF7IP 0.023 activating transcription factor 7 interacting protei... C11orf30 0.022 EMSY protein LOC100294420 0.022 PREDICTED: similar to mucin 2 BCORL1 0.021 BCL6 co-repressor-like 1 MUC5AC 0.020 mucin 5AC LOC100131514 0.020 PREDICTED: similar to hCG1747327, partial LOC100133790 0.020 PREDICTED: intestinal mucin-like, partial MUC6 0.019 mucin 6, gastric NFRKB 0.018 nuclear factor related to kappaB binding protein is... NFRKB 0.018 nuclear factor related to kappaB binding protein iso... RUNX1T1 0.018 acute myelogenous leukemia 1 translocation 1 protein... RUNX1T1 0.018 acute myelogenous leukemia 1 translocation 1 protein ... NACA 0.018 nascent polypeptide-associated complex alpha subuni... SPEN 0.017 spen homolog, transcriptional regulator AMOT 0.017 angiomotin isoform 2 AMOT 0.017 angiomotin isoform 1 RUNX1T1 0.017 acute myelogenous leukemia 1 translocation 1 protein... RUNX1T1 0.017 acute myelogenous leukemia 1 translocation 1 protein... CIC 0.017 capicua homolog SRCAP 0.017 Snf2-related CBP activator protein WNK1 0.017 WNK lysine deficient protein kinase 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.