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Search of human proteins with 148612833
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148612833 pellino 3 alpha isoform 2 [Homo sapiens]
(445 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148612833 pellino 3 alpha isoform 2 [Homo sapiens] 937 0.0
gi|148612798 pellino 3 alpha isoform 1 [Homo sapiens] 924 0.0
gi|10864063 pellino 2 [Homo sapiens] 635 0.0
gi|11037063 pellino protein [Homo sapiens] 631 0.0
gi|239757488 PREDICTED: chromosome 20 open reading frame 95 [Hom... 37 0.047
gi|239752003 PREDICTED: chromosome 20 open reading frame 95 [Hom... 37 0.047
gi|239746488 PREDICTED: Rho GTPase-activating protein 18-like [H... 37 0.047
gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sap... 32 0.89
gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo sa... 32 0.89
gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sap... 32 0.89
gi|219842266 usherin isoform B [Homo sapiens] 32 1.2
gi|13376611 zinc finger protein 703 [Homo sapiens] 32 1.5
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 31 2.0
gi|55741655 anoctamin 8 [Homo sapiens] 31 2.6
gi|94681038 phospholipase D4 [Homo sapiens] 30 3.4
gi|14249738 N-acetylglucosamine-1-phosphotransferase, gamma subu... 30 3.4
gi|39930610 sodium channel, voltage-gated, type I, beta isoform ... 30 4.4
gi|239749959 PREDICTED: hypothetical protein [Homo sapiens] 29 7.5
gi|13376844 ring finger protein 39 isoform 1 [Homo sapiens] 29 7.5
gi|25777716 ring finger protein 39 isoform 2 [Homo sapiens] 29 7.5
gi|46255017 hypothetical protein LOC84985 isoform b [Homo sapiens] 29 7.5
gi|40254997 hypothetical protein LOC84985 isoform a [Homo sapiens] 29 7.5
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 29 9.9
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 29 9.9
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 29 9.9
gi|7661566 integrator complex subunit 7 [Homo sapiens] 29 9.9
>gi|148612833 pellino 3 alpha isoform 2 [Homo sapiens]
Length = 445
Score = 937 bits (2422), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MVLEGNPEVGSPRTSDLQHRGNKGSCVLSSPGEDAQPGEEPIKYGELIVLGYNGCLASGD 60
MVLEGNPEVGSPRTSDLQHRGNKGSCVLSSPGEDAQPGEEPIKYGELIVLGYNGCLASGD
Sbjct: 1 MVLEGNPEVGSPRTSDLQHRGNKGSCVLSSPGEDAQPGEEPIKYGELIVLGYNGCLASGD 60
Query: 61 KGRRRSRLALSRRSHANGVKPDVMHHISTPLVSKALSNRGQHSISYTLSRSHSVIVEYTH 120
KGRRRSRLALSRRSHANGVKPDVMHHISTPLVSKALSNRGQHSISYTLSRSHSVIVEYTH
Sbjct: 61 KGRRRSRLALSRRSHANGVKPDVMHHISTPLVSKALSNRGQHSISYTLSRSHSVIVEYTH 120
Query: 121 DSDTDMFQIGRSTENMIDFVVTDTSPGGGAAEGPSAQSTISRYACRILCDRRPPYTARIY 180
DSDTDMFQIGRSTENMIDFVVTDTSPGGGAAEGPSAQSTISRYACRILCDRRPPYTARIY
Sbjct: 121 DSDTDMFQIGRSTENMIDFVVTDTSPGGGAAEGPSAQSTISRYACRILCDRRPPYTARIY 180
Query: 181 AAGFDASSNIFLGERAAKWRTPDGLMDGLTTNGVLVMHPAGGFSEDSAPGVWREISVCGN 240
AAGFDASSNIFLGERAAKWRTPDGLMDGLTTNGVLVMHPAGGFSEDSAPGVWREISVCGN
Sbjct: 181 AAGFDASSNIFLGERAAKWRTPDGLMDGLTTNGVLVMHPAGGFSEDSAPGVWREISVCGN 240
Query: 241 VYTLRDSRSAQQRGKLVENESNVLQDGSLIDLCGATLLWRTPAGLLRAPTLKQLEAQRQE 300
VYTLRDSRSAQQRGKLVENESNVLQDGSLIDLCGATLLWRTPAGLLRAPTLKQLEAQRQE
Sbjct: 241 VYTLRDSRSAQQRGKLVENESNVLQDGSLIDLCGATLLWRTPAGLLRAPTLKQLEAQRQE 300
Query: 301 ANAARPQCPVGLSTLAFPSPARGRTAPDKQQPWVYVRCGHVHGYHGWGCRRERGPQEREC 360
ANAARPQCPVGLSTLAFPSPARGRTAPDKQQPWVYVRCGHVHGYHGWGCRRERGPQEREC
Sbjct: 301 ANAARPQCPVGLSTLAFPSPARGRTAPDKQQPWVYVRCGHVHGYHGWGCRRERGPQEREC 360
Query: 361 PLCRLVGPYVPLWLGQEAGLCLDPGPPSHAFAPCGHVCSEKTARYWAQTPLPHGTHAFHA 420
PLCRLVGPYVPLWLGQEAGLCLDPGPPSHAFAPCGHVCSEKTARYWAQTPLPHGTHAFHA
Sbjct: 361 PLCRLVGPYVPLWLGQEAGLCLDPGPPSHAFAPCGHVCSEKTARYWAQTPLPHGTHAFHA 420
Query: 421 ACPFCGAWLTGEHGCVRLIFQGPLD 445
ACPFCGAWLTGEHGCVRLIFQGPLD
Sbjct: 421 ACPFCGAWLTGEHGCVRLIFQGPLD 445
>gi|148612798 pellino 3 alpha isoform 1 [Homo sapiens]
Length = 469
Score = 924 bits (2387), Expect = 0.0
Identities = 445/469 (94%), Positives = 445/469 (94%), Gaps = 24/469 (5%)
Query: 1 MVLEGNPEVGSPRTSDLQHRGNKGSCVLSSPGEDAQPGEEPIKYGELIVLG--------- 51
MVLEGNPEVGSPRTSDLQHRGNKGSCVLSSPGEDAQPGEEPIKYGELIVLG
Sbjct: 1 MVLEGNPEVGSPRTSDLQHRGNKGSCVLSSPGEDAQPGEEPIKYGELIVLGCCEEGGEET 60
Query: 52 ---------------YNGCLASGDKGRRRSRLALSRRSHANGVKPDVMHHISTPLVSKAL 96
YNGCLASGDKGRRRSRLALSRRSHANGVKPDVMHHISTPLVSKAL
Sbjct: 61 EAQRGEVTGPRAHSCYNGCLASGDKGRRRSRLALSRRSHANGVKPDVMHHISTPLVSKAL 120
Query: 97 SNRGQHSISYTLSRSHSVIVEYTHDSDTDMFQIGRSTENMIDFVVTDTSPGGGAAEGPSA 156
SNRGQHSISYTLSRSHSVIVEYTHDSDTDMFQIGRSTENMIDFVVTDTSPGGGAAEGPSA
Sbjct: 121 SNRGQHSISYTLSRSHSVIVEYTHDSDTDMFQIGRSTENMIDFVVTDTSPGGGAAEGPSA 180
Query: 157 QSTISRYACRILCDRRPPYTARIYAAGFDASSNIFLGERAAKWRTPDGLMDGLTTNGVLV 216
QSTISRYACRILCDRRPPYTARIYAAGFDASSNIFLGERAAKWRTPDGLMDGLTTNGVLV
Sbjct: 181 QSTISRYACRILCDRRPPYTARIYAAGFDASSNIFLGERAAKWRTPDGLMDGLTTNGVLV 240
Query: 217 MHPAGGFSEDSAPGVWREISVCGNVYTLRDSRSAQQRGKLVENESNVLQDGSLIDLCGAT 276
MHPAGGFSEDSAPGVWREISVCGNVYTLRDSRSAQQRGKLVENESNVLQDGSLIDLCGAT
Sbjct: 241 MHPAGGFSEDSAPGVWREISVCGNVYTLRDSRSAQQRGKLVENESNVLQDGSLIDLCGAT 300
Query: 277 LLWRTPAGLLRAPTLKQLEAQRQEANAARPQCPVGLSTLAFPSPARGRTAPDKQQPWVYV 336
LLWRTPAGLLRAPTLKQLEAQRQEANAARPQCPVGLSTLAFPSPARGRTAPDKQQPWVYV
Sbjct: 301 LLWRTPAGLLRAPTLKQLEAQRQEANAARPQCPVGLSTLAFPSPARGRTAPDKQQPWVYV 360
Query: 337 RCGHVHGYHGWGCRRERGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGPPSHAFAPCGH 396
RCGHVHGYHGWGCRRERGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGPPSHAFAPCGH
Sbjct: 361 RCGHVHGYHGWGCRRERGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGPPSHAFAPCGH 420
Query: 397 VCSEKTARYWAQTPLPHGTHAFHAACPFCGAWLTGEHGCVRLIFQGPLD 445
VCSEKTARYWAQTPLPHGTHAFHAACPFCGAWLTGEHGCVRLIFQGPLD
Sbjct: 421 VCSEKTARYWAQTPLPHGTHAFHAACPFCGAWLTGEHGCVRLIFQGPLD 469
>gi|10864063 pellino 2 [Homo sapiens]
Length = 420
Score = 635 bits (1637), Expect = 0.0
Identities = 298/419 (71%), Positives = 342/419 (81%), Gaps = 4/419 (0%)
Query: 30 SPGEDAQ--PGEEPIKYGELIVLGYNGCLASGDKGRRRSRLALSRRSHANGVKPDVMHHI 87
SPG++ P +EP+KYGEL+VLGYNG L +GD+GRR+SR AL +R ANGVKP +H I
Sbjct: 3 SPGQEEHCAPNKEPVKYGELVVLGYNGALPNGDRGRRKSRFALYKRPKANGVKPSTVHVI 62
Query: 88 STPLVSKALSNRGQHSISYTLSRSHSVIVEYTHDSDTDMFQIGRSTENMIDFVVTDTSPG 147
STP SKA+S +GQHSISYTLSR+ +V+VEYTHD DTDMFQ+GRSTE+ IDFVVTDT G
Sbjct: 63 STPQASKAISCKGQHSISYTLSRNQTVVVEYTHDKDTDMFQVGRSTESPIDFVVTDTISG 122
Query: 148 G-GAAEGPSAQSTISRYACRILCDRRPPYTARIYAAGFDASSNIFLGERAAKWRTPDGLM 206
E QSTISR+ACRI+CDR PYTARI+AAGFD+S NIFLGE+AAKW+ PDG M
Sbjct: 123 SQNTDEAQITQSTISRFACRIVCDRNEPYTARIFAAGFDSSKNIFLGEKAAKWKNPDGHM 182
Query: 207 DGLTTNGVLVMHPAGGFSEDSAPGVWREISVCGNVYTLRDSRSAQQRGKLVENESNVLQD 266
DGLTTNGVLVMHP GGF+E+S PGVWREISVCG+VYTLR++RSAQQRGKLVE+E+NVLQD
Sbjct: 183 DGLTTNGVLVMHPRGGFTEESQPGVWREISVCGDVYTLRETRSAQQRGKLVESETNVLQD 242
Query: 267 GSLIDLCGATLLWRTPAGLLRAPTLKQLEAQRQEANAARPQCPVGLSTLAFPSPARGRTA 326
GSLIDLCGATLLWRT GL PT K +EA RQE NAARPQCPVGL+TLAFPS R
Sbjct: 243 GSLIDLCGATLLWRTADGLFHTPTQKHIEALRQEINAARPQCPVGLNTLAFPSINRKEVV 302
Query: 327 PDKQQPWVYVRCGHVHGYHGWGCRRERGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGP 386
+K QPW Y+ CGHVHGYH WG R + ERECP+CR VGPYVPLWLG EAG +D GP
Sbjct: 303 EEK-QPWAYLSCGHVHGYHNWGHRSDTEANERECPMCRTVGPYVPLWLGCEAGFYVDAGP 361
Query: 387 PSHAFAPCGHVCSEKTARYWAQTPLPHGTHAFHAACPFCGAWLTGEHGCVRLIFQGPLD 445
P+HAF PCGHVCSEK+A+YW+Q PLPHGTHAFHAACPFC L GE C++LIFQGP+D
Sbjct: 362 PTHAFTPCGHVCSEKSAKYWSQIPLPHGTHAFHAACPFCATQLVGEQNCIKLIFQGPID 420
>gi|11037063 pellino protein [Homo sapiens]
Length = 418
Score = 631 bits (1627), Expect = 0.0
Identities = 294/417 (70%), Positives = 344/417 (82%), Gaps = 2/417 (0%)
Query: 30 SPGEDAQPGEEPIKYGELIVLGYNGCLASGDKGRRRSRLALSRRSHANGVKPDVMHHIST 89
SP ++ P + P+KYGELIVLGYNG L +GD+GRR+SR AL +R ANGVKP +H T
Sbjct: 3 SPDQENHPSKAPVKYGELIVLGYNGSLPNGDRGRRKSRFALFKRPKANGVKPSTVHIACT 62
Query: 90 PLVSKALSNRGQHSISYTLSRSHSVIVEYTHDSDTDMFQIGRSTENMIDFVVTDTSPGGG 149
P +KA+SN+ QHSISYTLSR+ +V+VEYTHDS+TDMFQIGRSTE+ IDFVVTDT PG
Sbjct: 63 PQAAKAISNKDQHSISYTLSRAQTVVVEYTHDSNTDMFQIGRSTESPIDFVVTDTVPGSQ 122
Query: 150 A-AEGPSAQSTISRYACRILCDRRPPYTARIYAAGFDASSNIFLGERAAKWRTPDGLMDG 208
+ ++ S QSTISR+ACRI+C+R PP+TARIYAAGFD+S NIFLGE+AAKW+T DG MDG
Sbjct: 123 SNSDTQSVQSTISRFACRIICERNPPFTARIYAAGFDSSKNIFLGEKAAKWKTSDGQMDG 182
Query: 209 LTTNGVLVMHPAGGFSEDSAPGVWREISVCGNVYTLRDSRSAQQRGKLVENESNVLQDGS 268
LTTNGVLVMHP GF+EDS PG+WREISVCGNV++LR++RSAQQRGK+VE E+N LQDGS
Sbjct: 183 LTTNGVLVMHPRNGFTEDSKPGIWREISVCGNVFSLRETRSAQQRGKMVEIETNQLQDGS 242
Query: 269 LIDLCGATLLWRTPAGLLRAPTLKQLEAQRQEANAARPQCPVGLSTLAFPSPARGRTAPD 328
LIDLCGATLLWRT GL PT+K LEA RQE NAARPQCPVG +TLAFPS R + D
Sbjct: 243 LIDLCGATLLWRTAEGLSHTPTVKHLEALRQEINAARPQCPVGFNTLAFPSMKR-KDVVD 301
Query: 329 KQQPWVYVRCGHVHGYHGWGCRRERGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGPPS 388
++QPWVY+ CGHVHGYH WG + ER ++RECP+CR VGPYVPLWLG EAG +D GPP+
Sbjct: 302 EKQPWVYLNCGHVHGYHNWGNKEERDGKDRECPMCRSVGPYVPLWLGCEAGFYVDAGPPT 361
Query: 389 HAFAPCGHVCSEKTARYWAQTPLPHGTHAFHAACPFCGAWLTGEHGCVRLIFQGPLD 445
HAF+PCGHVCSEKT YW+Q PLPHGTH FHAACPFC L GE G +RLIFQGPLD
Sbjct: 362 HAFSPCGHVCSEKTTAYWSQIPLPHGTHTFHAACPFCAHQLAGEQGYIRLIFQGPLD 418
>gi|239757488 PREDICTED: chromosome 20 open reading frame 95 [Homo
sapiens]
Length = 622
Score = 36.6 bits (83), Expect = 0.047
Identities = 33/100 (33%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 206 MDGLTTNGVLVMHPAG------GFSEDSAPGVWREISVCGNVYTLRDSRSAQQRGKLVEN 259
MD L +L +HPAG G S G W E+ LR+ S G+L E
Sbjct: 1 MDQLPQKNLLRLHPAGSAGCSTGVESSSMDGFWMEVEQIQQRDELREEDSGGNEGQLPEE 60
Query: 260 ---ESNVLQDGSLIDLCGATLLWRTPAGLLRAPTLKQLEA 296
ES LQD L L G L LL T Q+ A
Sbjct: 61 GEAESQWLQDTGLSGLLGGLGLDGDHQELLSTLTQTQVAA 100
>gi|239752003 PREDICTED: chromosome 20 open reading frame 95 [Homo
sapiens]
Length = 622
Score = 36.6 bits (83), Expect = 0.047
Identities = 33/100 (33%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 206 MDGLTTNGVLVMHPAG------GFSEDSAPGVWREISVCGNVYTLRDSRSAQQRGKLVEN 259
MD L +L +HPAG G S G W E+ LR+ S G+L E
Sbjct: 1 MDQLPQKNLLRLHPAGSAGCSTGVESSSMDGFWMEVEQIQQRDELREEDSGGNEGQLPEE 60
Query: 260 ---ESNVLQDGSLIDLCGATLLWRTPAGLLRAPTLKQLEA 296
ES LQD L L G L LL T Q+ A
Sbjct: 61 GEAESQWLQDTGLSGLLGGLGLDGDHQELLSTLTQTQVAA 100
>gi|239746488 PREDICTED: Rho GTPase-activating protein 18-like [Homo
sapiens]
Length = 622
Score = 36.6 bits (83), Expect = 0.047
Identities = 33/100 (33%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 206 MDGLTTNGVLVMHPAG------GFSEDSAPGVWREISVCGNVYTLRDSRSAQQRGKLVEN 259
MD L +L +HPAG G S G W E+ LR+ S G+L E
Sbjct: 1 MDQLPQKNLLRLHPAGSAGCSTGVESSSMDGFWMEVEQIQQRDELREEDSGGNEGQLPEE 60
Query: 260 ---ESNVLQDGSLIDLCGATLLWRTPAGLLRAPTLKQLEA 296
ES LQD L L G L LL T Q+ A
Sbjct: 61 GEAESQWLQDTGLSGLLGGLGLDGDHQELLSTLTQTQVAA 100
>gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sapiens]
Length = 3667
Score = 32.3 bits (72), Expect = 0.89
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 344 YHGWGCRRERGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGPPSHAFAPCGHVCSEKTA 403
Y G R G R C L P G G C DPG P H + ++ T
Sbjct: 2979 YSCTGKRSLLGQSSRTCQLNGHWSGSQPHCSGDATGTCGDPGTPGHGSRQESNFRTKSTV 3038
Query: 404 RYWAQTP-LPHGTHAFHAACPFCGAWLTGEHGC 435
RY T + HG+ C G+W + C
Sbjct: 3039 RYACDTGYILHGSE--ERTCLANGSWTGRQPEC 3069
>gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo
sapiens]
Length = 3538
Score = 32.3 bits (72), Expect = 0.89
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 344 YHGWGCRRERGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGPPSHAFAPCGHVCSEKTA 403
Y G R G R C L P G G C DPG P H + ++ T
Sbjct: 2850 YSCTGKRSLLGQSSRTCQLNGHWSGSQPHCSGDATGTCGDPGTPGHGSRQESNFRTKSTV 2909
Query: 404 RYWAQTP-LPHGTHAFHAACPFCGAWLTGEHGC 435
RY T + HG+ C G+W + C
Sbjct: 2910 RYACDTGYILHGSE--ERTCLANGSWTGRQPEC 2940
>gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sapiens]
Length = 3707
Score = 32.3 bits (72), Expect = 0.89
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 344 YHGWGCRRERGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGPPSHAFAPCGHVCSEKTA 403
Y G R G R C L P G G C DPG P H + ++ T
Sbjct: 3019 YSCTGKRSLLGQSSRTCQLNGHWSGSQPHCSGDATGTCGDPGTPGHGSRQESNFRTKSTV 3078
Query: 404 RYWAQTP-LPHGTHAFHAACPFCGAWLTGEHGC 435
RY T + HG+ C G+W + C
Sbjct: 3079 RYACDTGYILHGSE--ERTCLANGSWTGRQPEC 3109
>gi|219842266 usherin isoform B [Homo sapiens]
Length = 5202
Score = 32.0 bits (71), Expect = 1.2
Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 20/146 (13%)
Query: 286 LRAPTLKQLEAQRQEANAARPQCPVGLSTL--AFPSPARGRTAPDKQQPWVYVRCGHVHG 343
LRAPT + + + N + P P G+ +L F S A G + +HG
Sbjct: 4738 LRAPTFHVISSTQAVVNISAPGKPNGIVSLYRLFSSSAHGAETVLSEG---MATQQTLHG 4794
Query: 344 YHGWGCRRERGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGPPSHAFAPCGHVCSEKTA 403
+ G + C C GP A L P PPS +P + +TA
Sbjct: 4795 LQAF-TNYSIGVEACTCFNCCSKGP--------TAELRTHPAPPSGLSSPQIGTLASRTA 4845
Query: 404 RY-WAQTPLPHGT-HA----FHAACP 423
+ W+ P+G H+ FH ACP
Sbjct: 4846 SFRWSPPMFPNGVIHSYELQFHVACP 4871
>gi|13376611 zinc finger protein 703 [Homo sapiens]
Length = 590
Score = 31.6 bits (70), Expect = 1.5
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 5 GNPEVGSPRTSDLQHRGNKGSCVLSSPGEDAQPGEEP--IKYGELIVLGYNGCLASGDKG 62
G GSP SD ++ G G L ++ +P EP + G G +G SG G
Sbjct: 219 GGSRGGSPHHSDCKNGGGVGGGELDKKDQEPKPSPEPAAVSRGGGGEPGAHGGAESGASG 278
Query: 63 RR-RSRLALSRRSHANGVKPDVMHHISTPLVSKALSNRG 100
R+ AL H V P H PL ++ G
Sbjct: 279 RKSEPPSALVGAGHVAPVSPYKPGHSVFPLPPSSIGYHG 317
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 31.2 bits (69), Expect = 2.0
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 302 NAARPQCPVGLSTLAFPSPARGRTA--PDKQQPWVYVRCGHVHGYHGW-GCRRERGPQER 358
+ +RP C G S LA P PAR + P P + G + G G G R E P
Sbjct: 52 SCSRPLC-AGSSCLATPEPARAPSIAEPGPGIPVAAAKPGVLPGGGGCTGARTENPPLSP 110
Query: 359 ECPLCRLVGPYVPLWLGQEAGLCLDPGPP 387
CR+ P P+ L +G PG P
Sbjct: 111 TRGDCRVPVPAAPISLRWRSGREARPGGP 139
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 30.8 bits (68), Expect = 2.6
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 12/106 (11%)
Query: 292 KQLEAQR-QEANAARPQCPVG---LSTLAFPSPARGRTAPDKQQPWVYVRCGHVHGYHGW 347
++LEA R +E + PVG L T SPA P + P C G W
Sbjct: 1098 EELEAPRPEEEGSGTALAPVGAPALRTRRSRSPAPPPPMPLPRPPTPPAGCWQWDG--PW 1155
Query: 348 GCRRERGPQER-----ECPLCRLVG-PYVPLWLGQEAGLCLDPGPP 387
GC E + ECP C + G P P L +A P PP
Sbjct: 1156 GCGGEGAAPRQALAAAECPPCAMAGPPPAPQPLPGDASFYSLPPPP 1201
>gi|94681038 phospholipase D4 [Homo sapiens]
Length = 506
Score = 30.4 bits (67), Expect = 3.4
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 347 WGCRRE-RGPQERECPLCRLVGPYVPLWLGQEAGLCL---DPGPPSHAFAPCGHVCSEKT 402
W C R P +RE +++G LWLG A +CL P PP+ G V +
Sbjct: 14 WPCSMPPRRPWDREAGTLQVLGALAVLWLGSVALICLLWQVPRPPT-----WGQVQPKDV 68
Query: 403 ARYWAQTPLP 412
R W P
Sbjct: 69 PRSWEHGSSP 78
>gi|14249738 N-acetylglucosamine-1-phosphotransferase, gamma subunit
[Homo sapiens]
Length = 305
Score = 30.4 bits (67), Expect = 3.4
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 14/83 (16%)
Query: 230 GVWREISVCGNVYT---LRD-----SRSAQQRGKLVENESNVLQDGSLIDLCGATLLWRT 281
G+W E + N +T +RD SRS Q + +L +SN L S C L + T
Sbjct: 106 GIWHEWEIANNTFTGMWMRDGDACRSRSRQSKVELACGKSNRLAHVSEPSTCVYALTFET 165
Query: 282 PA-----GLLRAPTLKQLEAQRQ 299
P LL PTL + QRQ
Sbjct: 166 PLVCHPHALLVYPTLPE-ALQRQ 187
>gi|39930610 sodium channel, voltage-gated, type I, beta isoform b
[Homo sapiens]
Length = 268
Score = 30.0 bits (66), Expect = 4.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 297 QRQEANAARPQCPVGLSTLAFPSPARGRTAP 327
QR E + P CP+ L L SP RG++ P
Sbjct: 190 QRAEGEGSSPSCPLQLWPLFLSSPRRGQSMP 220
>gi|239749959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 959
Score = 29.3 bits (64), Expect = 7.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 344 YHGWGCRRERGPQERECP 361
+H WGCR + Q+R CP
Sbjct: 293 HHPWGCREDMAEQKRVCP 310
>gi|13376844 ring finger protein 39 isoform 1 [Homo sapiens]
Length = 420
Score = 29.3 bits (64), Expect = 7.5
Identities = 26/76 (34%), Positives = 26/76 (34%), Gaps = 21/76 (27%)
Query: 352 ERGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGPPSHAFAPCGH-VCSEKTARYWAQTP 410
ER Q CPLC G DP C H C AR W TP
Sbjct: 80 ERLEQLATCPLC--------------GGSFEDP-----VLLACEHSFCRACLARRWG-TP 119
Query: 411 LPHGTHAFHAACPFCG 426
GT A ACP CG
Sbjct: 120 PATGTEASPTACPCCG 135
>gi|25777716 ring finger protein 39 isoform 2 [Homo sapiens]
Length = 354
Score = 29.3 bits (64), Expect = 7.5
Identities = 26/76 (34%), Positives = 26/76 (34%), Gaps = 21/76 (27%)
Query: 352 ERGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGPPSHAFAPCGH-VCSEKTARYWAQTP 410
ER Q CPLC G DP C H C AR W TP
Sbjct: 80 ERLEQLATCPLC--------------GGSFEDP-----VLLACEHSFCRACLARRWG-TP 119
Query: 411 LPHGTHAFHAACPFCG 426
GT A ACP CG
Sbjct: 120 PATGTEASPTACPCCG 135
>gi|46255017 hypothetical protein LOC84985 isoform b [Homo sapiens]
Length = 367
Score = 29.3 bits (64), Expect = 7.5
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 253 RGKLVENESNVLQDGSLIDLCGATLLWRTPAGLLRAPTLKQLEAQRQEANAARPQCP 309
R +NES L +L+D G+ WR + L +EAQ +A A P CP
Sbjct: 26 RADFSDNESARLATDALLD-GGSEAYWRVLSQEGEVDFLSSVEAQYIQAQAREPPCP 81
>gi|40254997 hypothetical protein LOC84985 isoform a [Homo sapiens]
Length = 434
Score = 29.3 bits (64), Expect = 7.5
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 253 RGKLVENESNVLQDGSLIDLCGATLLWRTPAGLLRAPTLKQLEAQRQEANAARPQCP 309
R +NES L +L+D G+ WR + L +EAQ +A A P CP
Sbjct: 26 RADFSDNESARLATDALLD-GGSEAYWRVLSQEGEVDFLSSVEAQYIQAQAREPPCP 81
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 28.9 bits (63), Expect = 9.9
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 58 SGDKGRRRSRLALSRRSHANGVKPDVMHHISTPLVSKALSNRGQHSISYTLSR--SHSVI 115
S ++ RR+SR + R H+ P+ S P +A S HS S T S+ +HS
Sbjct: 576 SKERERRQSRSSSEERDHSRSRSPNKQSGYSRP---RASSKEKAHSRSRTPSKEGNHSQS 632
Query: 116 VEYTHDSDTDMFQIGRSTE 134
+ +SD + RS +
Sbjct: 633 RTSSKESDPSQSTVPRSPD 651
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 28.9 bits (63), Expect = 9.9
Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 21/106 (19%)
Query: 343 GYHGWGCRRERGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGPP-------SHAFAPC- 394
G++G GCRR G + + P G + G C P SH PC
Sbjct: 276 GFYGLGCRRRCGQCKGQQPCTVAEGRCLTCEPGWNGTKCDQPCATGFYGEGCSHRCPPCR 335
Query: 395 -GHVCSEKTARY------W----AQTPLPHGTHAFHAA--CPFCGA 427
GH C+ T + W +T +GT+ A C CG+
Sbjct: 336 DGHACNHVTGKCTRCNAGWIGDRCETKCSNGTYGEDCAFVCADCGS 381
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 28.9 bits (63), Expect = 9.9
Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 21/106 (19%)
Query: 343 GYHGWGCRRERGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGPP-------SHAFAPC- 394
G++G GCRR G + + P G + G C P SH PC
Sbjct: 276 GFYGLGCRRRCGQCKGQQPCTVAEGRCLTCEPGWNGTKCDQPCATGFYGEGCSHRCPPCR 335
Query: 395 -GHVCSEKTARY------W----AQTPLPHGTHAFHAA--CPFCGA 427
GH C+ T + W +T +GT+ A C CG+
Sbjct: 336 DGHACNHVTGKCTRCNAGWIGDRCETKCSNGTYGEDCAFVCADCGS 381
>gi|7661566 integrator complex subunit 7 [Homo sapiens]
Length = 962
Score = 28.9 bits (63), Expect = 9.9
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 212 NGVLVMHPAGGFSEDSAPGVWREI-SVCGNVYTLRDSRSAQQRGKLVENESNVLQ 265
N L + G S PG++R+I SVC NV + S+S Q ++N +N ++
Sbjct: 824 NQQLALKVEGVVQHGSKPGLFRKIQSVCLNVSSTLQSKSGQDYKIPIDNMTNEME 878
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,083,873
Number of Sequences: 37866
Number of extensions: 1084252
Number of successful extensions: 2523
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2507
Number of HSP's gapped (non-prelim): 31
length of query: 445
length of database: 18,247,518
effective HSP length: 105
effective length of query: 340
effective length of database: 14,271,588
effective search space: 4852339920
effective search space used: 4852339920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.