Guide to the Human Genome
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Name: FAM83A Sequence: fasta or formatted (367aa) NCBI GI: 46255017
Description:

hypothetical protein LOC84985 isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {434aa} hypothetical protein LOC84985 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         29           2
 C cysteine            1.9          7           1
 D aspartate           4.9         18           1
 E glutamate           6.0         22           2
 F phenylalanine       4.9         18           1
 G glycine             6.8         25           2
 H histidine           2.2          8           1
 I isoleucine          4.1         15           2
 K lysine              6.3         23           2
 L leucine             8.4         31           2
 M methionine          1.4          5           1
 N asparagine          2.5          9           2
 P proline             4.9         18           2
 Q glutamine           4.1         15           1
 R arginine            6.5         24           2
 S serine             12.3         45           4
 T threonine           4.1         15           2
 V valine              7.1         26           1
 W tryptophan          1.6          6           1
 Y tyrosine            2.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84985 isoform b 
FAM83A                0.934   hypothetical protein LOC84985 isoform a 
FAM83C                0.302   hypothetical protein LOC128876 
FAM83H                0.198   FAM83H 
FAM83F                0.191   hypothetical protein LOC113828 
FAM83B                0.187   hypothetical protein LOC222584 
FAM83D                0.187   hypothetical protein LOC81610 
FAM83G                0.186   hypothetical protein LOC644815 
FAM83E                0.165   hypothetical protein LOC54854 
ULK1                  0.013   Unc-51-like kinase 1 
ARHGEF15              0.010   Rho guanine exchange factor 15 
NOLC1                 0.010   nucleolar and coiled-body phosphoprotein 1 
PRDM2                 0.010   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.010   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.010   retinoblastoma protein-binding zinc finger protein i...
SHROOM3               0.010   shroom family member 3 protein 
PLD6                  0.010   phospholipase D6 
BAT3                  0.008   HLA-B associated transcript-3 isoform b 
BAT3                  0.008   HLA-B associated transcript-3 isoform b 
BAT3                  0.008   HLA-B associated transcript-3 isoform b 
BAT3                  0.008   HLA-B associated transcript-3 isoform a 
NAV3                  0.008   neuron navigator 3 
KLF16                 0.008   BTE-binding protein 4 
LOC100129036          0.007   PREDICTED: hypothetical protein 
BHLHE22               0.007   basic helix-loop-helix domain containing, class B, 5...
RADIL                 0.007   Rap GTPase interactor 
BRD3                  0.007   bromodomain containing protein 3 
ZBTB4                 0.007   zinc finger and BTB domain containing 4 
ZBTB4                 0.007   zinc finger and BTB domain containing 4 
THRAP3                0.007   thyroid hormone receptor associated protein 3 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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