Guide to the Human Genome
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Name: LOC100287515 Sequence: fasta or formatted (603aa) NCBI GI: 239747151
Description:

PREDICTED: hypothetical protein XP_002343928

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         27           1
 C cysteine            5.5         33           1
 D aspartate           2.3         14           1
 E glutamate           8.1         49           2
 F phenylalanine       4.1         25           3
 G glycine             6.8         41           2
 H histidine           5.6         34           1
 I isoleucine          3.6         22           2
 K lysine              8.5         51           1
 L leucine             8.5         51           3
 M methionine          0.8          5           1
 N asparagine          3.3         20           2
 P proline             4.0         24           1
 Q glutamine           5.0         30           1
 R arginine            5.5         33           2
 S serine             10.4         63           3
 T threonine           4.5         27           1
 V valine              3.6         22           2
 W tryptophan          1.5          9           1
 Y tyrosine            3.8         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343928 
ZNF26                 0.850   zinc finger protein 26 
ZNF268                0.454   zinc finger protein 268 
ZNF182                0.433   zinc finger protein 21 isoform 2 
ZNF432                0.430   zinc finger protein 432 
ZNF182                0.429   zinc finger protein 21 isoform 1 
ZNF300                0.424   zinc finger protein 300 
ZNF717                0.419   zinc finger protein 717 
ZNF569                0.418   zinc finger protein 569 
ZNF12                 0.417   zinc finger protein 12 isoform a 
ZNF568                0.414   zinc finger protein 568 
LOC100287429          0.414   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.414   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.414   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.414   zinc finger protein 84 
ZNF84                 0.414   zinc finger protein 84 
ZNF615                0.414   zinc finger protein 615 
ZNF630                0.413   zinc finger protein 630 
ZNF12                 0.413   zinc finger protein 12 isoform b 
LOC100287163          0.407   PREDICTED: hypothetical protein XP_002343923 
ZNF41                 0.399   zinc finger protein 41 
ZNF41                 0.399   zinc finger protein 41 
ZNF334                0.399   zinc finger protein 334 isoform a 
ZNF585B               0.397   zinc finger protein 585B 
ZNF624                0.395   zinc finger protein 624 
ZNF184                0.394   zinc finger protein 184 
ZNF665                0.393   zinc finger protein 665 
ZNF33A                0.387   zinc finger protein 33A isoform b 
ZNF135                0.383   zinc finger protein 135 
ZNF540                0.382   zinc finger protein 540 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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