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Search of human proteins with 146229354
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|146229354 phospholipid scramblase family, member 5 [Homo
sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|146229354 phospholipid scramblase family, member 5 [Homo sapi... 563 e-161
gi|10863877 phospholipid scramblase 1 [Homo sapiens] 313 1e-85
gi|9966795 phospholipid scramblase 2 [Homo sapiens] 298 4e-81
gi|31543417 phospholipid scramblase 3 [Homo sapiens] 246 2e-65
gi|190341019 phospholipid scramblase 4 isoform a [Homo sapiens] 207 1e-53
gi|190194379 phospholipid scramblase 4 isoform a [Homo sapiens] 207 1e-53
gi|190194377 phospholipid scramblase 4 isoform a [Homo sapiens] 207 1e-53
gi|190194381 phospholipid scramblase 4 isoform b [Homo sapiens] 120 1e-27
gi|239742160 PREDICTED: similar to hCG1794790 [Homo sapiens] 88 7e-18
gi|239748259 PREDICTED: similar to hCG1794790 [Homo sapiens] 85 8e-17
gi|239753717 PREDICTED: similar to hCG1794790 [Homo sapiens] 83 3e-16
gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate... 37 0.024
gi|116174780 SEC24 related gene family, member A [Homo sapiens] 34 0.12
gi|148839466 kalirin, RhoGEF kinase isoform 1 [Homo sapiens] 32 0.59
gi|68362740 kalirin, RhoGEF kinase isoform 3 [Homo sapiens] 32 0.59
gi|56549696 E1A binding protein p400 [Homo sapiens] 32 0.77
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 30 1.7
gi|29826294 golgi reassembly stacking protein 2 [Homo sapiens] 30 2.2
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 30 2.2
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 30 2.2
gi|224458301 family with sequence similarity 186, member A [Homo... 30 2.9
gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [H... 30 2.9
gi|237820624 pleckstrin homology domain containing, family N mem... 29 3.8
gi|237820622 pleckstrin homology domain containing, family N mem... 29 3.8
gi|148833515 interferon regulatory factor 5 isoform c [Homo sapi... 29 3.8
gi|148833496 interferon regulatory factor 5 isoform b [Homo sapi... 29 3.8
gi|148833494 interferon regulatory factor 5 isoform d [Homo sapi... 29 3.8
gi|148833492 interferon regulatory factor 5 isoform c [Homo sapi... 29 3.8
gi|148833488 interferon regulatory factor 5 isoform c [Homo sapi... 29 3.8
gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens] 29 3.8
>gi|146229354 phospholipid scramblase family, member 5 [Homo
sapiens]
Length = 271
Score = 563 bits (1451), Expect = e-161
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MASKDAQNQRRGLPGFLPGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEY 60
MASKDAQNQRRGLPGFLPGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEY
Sbjct: 1 MASKDAQNQRRGLPGFLPGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEY 60
Query: 61 LSQLDLIIIHQQVELLGMILGTETSNKYEIKNSLGQRIYFAVEESICFNRTFCSTLRSCT 120
LSQLDLIIIHQQVELLGMILGTETSNKYEIKNSLGQRIYFAVEESICFNRTFCSTLRSCT
Sbjct: 61 LSQLDLIIIHQQVELLGMILGTETSNKYEIKNSLGQRIYFAVEESICFNRTFCSTLRSCT 120
Query: 121 LRITDNSGREVITVNRPLRCNSCWCPCYLQELEIQAPPGTIVGYVTQKWDPFLPKFTIQN 180
LRITDNSGREVITVNRPLRCNSCWCPCYLQELEIQAPPGTIVGYVTQKWDPFLPKFTIQN
Sbjct: 121 LRITDNSGREVITVNRPLRCNSCWCPCYLQELEIQAPPGTIVGYVTQKWDPFLPKFTIQN 180
Query: 181 ANKEDILKIVGPCVTCGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDVFTNADNFGIHV 240
ANKEDILKIVGPCVTCGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDVFTNADNFGIHV
Sbjct: 181 ANKEDILKIVGPCVTCGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDVFTNADNFGIHV 240
Query: 241 PADLDVTVKAAMIGACFLFDFMFFEHSLAGL 271
PADLDVTVKAAMIGACFLFDFMFFEHSLAGL
Sbjct: 241 PADLDVTVKAAMIGACFLFDFMFFEHSLAGL 271
>gi|10863877 phospholipid scramblase 1 [Homo sapiens]
Length = 318
Score = 313 bits (801), Expect = 1e-85
Identities = 149/250 (59%), Positives = 183/250 (73%), Gaps = 6/250 (2%)
Query: 19 GAPDPDQSL---PASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVEL 75
G P P+Q + P + P A +P P P ++ PPGLEYLSQ+D I+IHQQ+EL
Sbjct: 60 GFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQ---PPLNCPPGLEYLSQIDQILIHQQIEL 116
Query: 76 LGMILGTETSNKYEIKNSLGQRIYFAVEESICFNRTFCSTLRSCTLRITDNSGREVITVN 135
L ++ G ET+NKYEIKNS GQR+YFA E++ C R C R TLRI DN G+EVIT+
Sbjct: 117 LEVLTGFETNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLE 176
Query: 136 RPLRCNSCWCPCYLQELEIQAPPGTIVGYVTQKWDPFLPKFTIQNANKEDILKIVGPCVT 195
RPLRC+SC CPC LQE+EIQAPPG +GYV Q W P LPKFTIQN +ED+LKI GPCV
Sbjct: 177 RPLRCSSCCCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVV 236
Query: 196 CGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDVFTNADNFGIHVPADLDVTVKAAMIGA 255
C C GDVDFE+K+++E+ +GKISK+W+G + + FT+ADNFGI P DLDV +KA MIGA
Sbjct: 237 CSCCGDVDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGIQFPLDLDVKMKAVMIGA 296
Query: 256 CFLFDFMFFE 265
CFL DFMFFE
Sbjct: 297 CFLIDFMFFE 306
>gi|9966795 phospholipid scramblase 2 [Homo sapiens]
Length = 224
Score = 298 bits (762), Expect = 4e-81
Identities = 136/218 (62%), Positives = 168/218 (77%)
Query: 50 PTVSLPPGLEYLSQLDLIIIHQQVELLGMILGTETSNKYEIKNSLGQRIYFAVEESICFN 109
P ++ PPGLEYLSQ+D+I+IHQQ+ELL ++ E+SN YEIKNS GQRIYFA E++
Sbjct: 6 PPLNCPPGLEYLSQIDMILIHQQIELLEVLFSFESSNMYEIKNSFGQRIYFAAEDTNFCI 65
Query: 110 RTFCSTLRSCTLRITDNSGREVITVNRPLRCNSCWCPCYLQELEIQAPPGTIVGYVTQKW 169
R C R TLRITDN GREVIT+ RPLRCN C CPC LQE+EIQAPPG VGYVTQ W
Sbjct: 66 RNCCGRSRPFTLRITDNVGREVITLERPLRCNCCCCPCCLQEIEIQAPPGVPVGYVTQTW 125
Query: 170 DPFLPKFTIQNANKEDILKIVGPCVTCGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDV 229
P L KFTI+N +ED+LKI GPC+ C C VDFE+ +++E++ +G+ISK+WSGF+ +
Sbjct: 126 HPCLTKFTIKNQKREDVLKISGPCIVCSCIAGVDFEITSLDEQIVVGRISKHWSGFLREA 185
Query: 230 FTNADNFGIHVPADLDVTVKAAMIGACFLFDFMFFEHS 267
FT+ADNFGI P DLDV +KA MIGACFL D+MFFE +
Sbjct: 186 FTDADNFGIQFPRDLDVKMKAVMIGACFLIDYMFFERT 223
>gi|31543417 phospholipid scramblase 3 [Homo sapiens]
Length = 295
Score = 246 bits (628), Expect = 2e-65
Identities = 121/253 (47%), Positives = 166/253 (65%), Gaps = 7/253 (2%)
Query: 13 LPGFLPGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQ 72
+P +P AP P +L S P ++L + FLP +P GLE+L Q+D I+IHQ+
Sbjct: 38 VPAQVP-APAPGFALFPSPGP------VALGSAAPFLPLPGVPSGLEFLVQIDQILIHQK 90
Query: 73 VELLGMILGTETSNKYEIKNSLGQRIYFAVEESICFNRTFCSTLRSCTLRITDNSGREVI 132
E + LG ET N+YE+++ GQ + A EES C R C R +R+ D REV+
Sbjct: 91 AERVETFLGWETCNRYELRSGAGQPLGQAAEESNCCARLCCGARRPLRVRLADPGDREVL 150
Query: 133 TVNRPLRCNSCWCPCYLQELEIQAPPGTIVGYVTQKWDPFLPKFTIQNANKEDILKIVGP 192
+ RPL C CPC LQE+E+QAPPGT +G+V Q W PFLPKF+IQ+A+++ +L++VGP
Sbjct: 151 RLLRPLHCGCSCCPCGLQEMEVQAPPGTTIGHVLQTWHPFLPKFSIQDADRQTVLRVVGP 210
Query: 193 CVTCGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDVFTNADNFGIHVPADLDVTVKAAM 252
C TCGC D +FEVKT +E ++G+ISK W G V + T+AD+FG+ P DLDV VKA +
Sbjct: 211 CWTCGCGTDTNFEVKTRDESRSVGRISKQWGGLVREALTDADDFGLQFPLDLDVRVKAVL 270
Query: 253 IGACFLFDFMFFE 265
+GA FL D+MFFE
Sbjct: 271 LGATFLIDYMFFE 283
>gi|190341019 phospholipid scramblase 4 isoform a [Homo sapiens]
Length = 329
Score = 207 bits (526), Expect = 1e-53
Identities = 110/255 (43%), Positives = 152/255 (59%), Gaps = 17/255 (6%)
Query: 16 FLPGA-PDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVE 74
+ PG P P+QS+P + PG P + PPGLEYL QLD I + Q E
Sbjct: 83 YQPGKYPMPNQSVPITWMPGPT-------------PMANCPPGLEYLVQLDNIHVLQHFE 129
Query: 75 LLGMILGTETSNKYEIKNSLGQRIYFAVEESICFNRTFCSTLRSCTLRITDNSGREVITV 134
L M+ ET+N+Y+IKN+ Q +Y E++ F R TLR LR+TD GRE++T+
Sbjct: 130 PLEMMTCFETNNRYDIKNNSDQMVYIVTEDTDDFTRNAYRTLRPFVLRVTDCMGREIMTM 189
Query: 135 NRPLRCNSC--WCPCYLQELEIQAPPGTIVGYVTQKWDPFLPKFTIQNANKEDILKIVGP 192
RP RC C CP QELE+Q PPG +G+V + W+ ++IQN KE+++++ GP
Sbjct: 190 QRPFRCTCCCFCCPSARQELEVQCPPGVTIGFVAEHWNLCRAVYSIQNEKKENVMRVRGP 249
Query: 193 CVTCGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDVFTNADNFGIHVPADLDVTVKAAM 252
C T GC D FEVK+++ IG I + W+G ++ +AD+F IH P DLDV +KA +
Sbjct: 250 CSTYGCGSDSVFEVKSLDGISNIGSIIRKWNGLLS-AMADADHFDIHFPLDLDVKMKAMI 308
Query: 253 IGACFLFDFMFFEHS 267
GACFL DFM+FE S
Sbjct: 309 FGACFLIDFMYFERS 323
>gi|190194379 phospholipid scramblase 4 isoform a [Homo sapiens]
Length = 329
Score = 207 bits (526), Expect = 1e-53
Identities = 110/255 (43%), Positives = 152/255 (59%), Gaps = 17/255 (6%)
Query: 16 FLPGA-PDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVE 74
+ PG P P+QS+P + PG P + PPGLEYL QLD I + Q E
Sbjct: 83 YQPGKYPMPNQSVPITWMPGPT-------------PMANCPPGLEYLVQLDNIHVLQHFE 129
Query: 75 LLGMILGTETSNKYEIKNSLGQRIYFAVEESICFNRTFCSTLRSCTLRITDNSGREVITV 134
L M+ ET+N+Y+IKN+ Q +Y E++ F R TLR LR+TD GRE++T+
Sbjct: 130 PLEMMTCFETNNRYDIKNNSDQMVYIVTEDTDDFTRNAYRTLRPFVLRVTDCMGREIMTM 189
Query: 135 NRPLRCNSC--WCPCYLQELEIQAPPGTIVGYVTQKWDPFLPKFTIQNANKEDILKIVGP 192
RP RC C CP QELE+Q PPG +G+V + W+ ++IQN KE+++++ GP
Sbjct: 190 QRPFRCTCCCFCCPSARQELEVQCPPGVTIGFVAEHWNLCRAVYSIQNEKKENVMRVRGP 249
Query: 193 CVTCGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDVFTNADNFGIHVPADLDVTVKAAM 252
C T GC D FEVK+++ IG I + W+G ++ +AD+F IH P DLDV +KA +
Sbjct: 250 CSTYGCGSDSVFEVKSLDGISNIGSIIRKWNGLLS-AMADADHFDIHFPLDLDVKMKAMI 308
Query: 253 IGACFLFDFMFFEHS 267
GACFL DFM+FE S
Sbjct: 309 FGACFLIDFMYFERS 323
>gi|190194377 phospholipid scramblase 4 isoform a [Homo sapiens]
Length = 329
Score = 207 bits (526), Expect = 1e-53
Identities = 110/255 (43%), Positives = 152/255 (59%), Gaps = 17/255 (6%)
Query: 16 FLPGA-PDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVE 74
+ PG P P+QS+P + PG P + PPGLEYL QLD I + Q E
Sbjct: 83 YQPGKYPMPNQSVPITWMPGPT-------------PMANCPPGLEYLVQLDNIHVLQHFE 129
Query: 75 LLGMILGTETSNKYEIKNSLGQRIYFAVEESICFNRTFCSTLRSCTLRITDNSGREVITV 134
L M+ ET+N+Y+IKN+ Q +Y E++ F R TLR LR+TD GRE++T+
Sbjct: 130 PLEMMTCFETNNRYDIKNNSDQMVYIVTEDTDDFTRNAYRTLRPFVLRVTDCMGREIMTM 189
Query: 135 NRPLRCNSC--WCPCYLQELEIQAPPGTIVGYVTQKWDPFLPKFTIQNANKEDILKIVGP 192
RP RC C CP QELE+Q PPG +G+V + W+ ++IQN KE+++++ GP
Sbjct: 190 QRPFRCTCCCFCCPSARQELEVQCPPGVTIGFVAEHWNLCRAVYSIQNEKKENVMRVRGP 249
Query: 193 CVTCGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDVFTNADNFGIHVPADLDVTVKAAM 252
C T GC D FEVK+++ IG I + W+G ++ +AD+F IH P DLDV +KA +
Sbjct: 250 CSTYGCGSDSVFEVKSLDGISNIGSIIRKWNGLLS-AMADADHFDIHFPLDLDVKMKAMI 308
Query: 253 IGACFLFDFMFFEHS 267
GACFL DFM+FE S
Sbjct: 309 FGACFLIDFMYFERS 323
>gi|190194381 phospholipid scramblase 4 isoform b [Homo sapiens]
Length = 239
Score = 120 bits (302), Expect = 1e-27
Identities = 55/120 (45%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Query: 148 YLQELEIQAPPGTIVGYVTQKWDPFLPKFTIQNANKEDILKIVGPCVTCGCFGDVDFEVK 207
YL +LE+Q PPG +G+V + W+ ++IQN KE+++++ GPC T GC D FEVK
Sbjct: 115 YLVQLEVQCPPGVTIGFVAEHWNLCRAVYSIQNEKKENVMRVRGPCSTYGCGSDSVFEVK 174
Query: 208 TINEKLTIGKISKYWSGFVNDVFTNADNFGIHVPADLDVTVKAAMIGACFLFDFMFFEHS 267
+++ IG I + W+G ++ +AD+F IH P DLDV +KA + GACFL DFM+FE S
Sbjct: 175 SLDGISNIGSIIRKWNGLLS-AMADADHFDIHFPLDLDVKMKAMIFGACFLIDFMYFERS 233
Score = 30.4 bits (67), Expect = 1.7
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 14/52 (26%)
Query: 16 FLPGA-PDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDL 66
+ PG P P+QS+P + PG P + PPGLEYL QL++
Sbjct: 83 YQPGKYPMPNQSVPITWMPGPT-------------PMANCPPGLEYLVQLEV 121
>gi|239742160 PREDICTED: similar to hCG1794790 [Homo sapiens]
Length = 172
Score = 88.2 bits (217), Expect = 7e-18
Identities = 64/213 (30%), Positives = 98/213 (46%), Gaps = 61/213 (28%)
Query: 53 SLPPGLEYLSQLDLIIIHQQVELLGMILGTETSNKYEIKNSLGQRIYFAVEESICFNRTF 112
S P GLEYL Q++ + + Q + LG++ ETS YEI N+ GQRIYFA E + CF R
Sbjct: 18 SCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQGQRIYFAEERNNCFLRHL 77
Query: 113 CSTLRSCTLRITDNSGREVITVNRPLRCNSCWCPCYLQELEIQAPPGTIVGYVTQKWDPF 172
C T+ I DN GR+V+ +++ L+C+ LQ+L + ++G +++++ F
Sbjct: 78 CGFSSPFTMTIYDNVGRDVLALHKALKCS-------LQKL-LTLDEEMVIGKISKQYSGF 129
Query: 173 LPKFTIQNANKEDILKIVGPCVTCGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDVFTN 232
+ + + N K FG
Sbjct: 130 V-RGILTNGEK---------------FG-------------------------------- 141
Query: 233 ADNFGIHVPADLDVTVKAAMIGACFLFDFMFFE 265
I P DLDV +KA M+GA FL ++M+FE
Sbjct: 142 -----IQFPFDLDVKIKALMLGATFLIEYMYFE 169
>gi|239748259 PREDICTED: similar to hCG1794790 [Homo sapiens]
Length = 172
Score = 84.7 bits (208), Expect = 8e-17
Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 61/213 (28%)
Query: 53 SLPPGLEYLSQLDLIIIHQQVELLGMILGTETSNKYEIKNSLGQRIYFAVEESICFNRTF 112
S P GLEYL Q++ + + Q + LG++ ETS YEI N+ QRIYFA E + CF R
Sbjct: 18 SCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQVQRIYFAEERNNCFLRHL 77
Query: 113 CSTLRSCTLRITDNSGREVITVNRPLRCNSCWCPCYLQELEIQAPPGTIVGYVTQKWDPF 172
C T+ I DN GR+V+ +++ L+C+ LQ+L + ++G +++++ F
Sbjct: 78 CGFSSPFTMTIYDNVGRDVLALHKALKCS-------LQKL-LTLDEEMVIGKISKQYSGF 129
Query: 173 LPKFTIQNANKEDILKIVGPCVTCGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDVFTN 232
+ + + N K FG
Sbjct: 130 V-RGILTNGEK---------------FG-------------------------------- 141
Query: 233 ADNFGIHVPADLDVTVKAAMIGACFLFDFMFFE 265
I P DLDV +KA M+GA FL ++M+FE
Sbjct: 142 -----IQFPFDLDVKIKALMLGATFLIEYMYFE 169
>gi|239753717 PREDICTED: similar to hCG1794790 [Homo sapiens]
Length = 172
Score = 82.8 bits (203), Expect = 3e-16
Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 61/213 (28%)
Query: 53 SLPPGLEYLSQLDLIIIHQQVELLGMILGTETSNKYEIKNSLGQRIYFAVEESICFNRTF 112
S P GLEYL Q++ + + Q + LG++ ETS YEI N+ QRIYFA E + CF R
Sbjct: 18 SCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQVQRIYFAEERNNCFLRHL 77
Query: 113 CSTLRSCTLRITDNSGREVITVNRPLRCNSCWCPCYLQELEIQAPPGTIVGYVTQKWDPF 172
C T+ I DN GR+V+ +++ L+C+ LQ+L + ++G +++++ F
Sbjct: 78 CGFSSPFTMTIYDNVGRDVLALHKALKCS-------LQKL-LTLDEEMVIGKISKQYSGF 129
Query: 173 LPKFTIQNANKEDILKIVGPCVTCGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDVFTN 232
+ + + N K FG
Sbjct: 130 V-RGILTNGEK---------------FG-------------------------------- 141
Query: 233 ADNFGIHVPADLDVTVKAAMIGACFLFDFMFFE 265
I P DLDV +K M+GA FL ++M+FE
Sbjct: 142 -----IQFPFDLDVKIKXLMLGATFLIEYMYFE 169
>gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate 3B
[Homo sapiens]
Length = 1043
Score = 36.6 bits (83), Expect = 0.024
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 33 PGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDL----IIIHQQVELLGMILGT 82
P W L PLP LPT LPPGL L ++ IH V+L+ LG+
Sbjct: 253 PPGPHWLLGTPLPPKALPTAGLPPGLLALGEVARPPLEAAIHDIVQLVARALGS 306
>gi|116174780 SEC24 related gene family, member A [Homo sapiens]
Length = 1093
Score = 34.3 bits (77), Expect = 0.12
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 17 LPGAPDPDQSLPASSNPGNQAWQLSLPLP-SSFLPTVSLPPGLEY 60
L P P LPAS NP + P+P SSFLP +LPP L +
Sbjct: 100 LHSGPAPRMPLPASQNPA------TTPMPSSSFLPEANLPPPLNW 138
>gi|148839466 kalirin, RhoGEF kinase isoform 1 [Homo sapiens]
Length = 2986
Score = 32.0 bits (71), Expect = 0.59
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 11 RGLPGFLPGA-PDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIII 69
R P LP A P P S+PA S + + PLP + T + PG EY D
Sbjct: 2252 RSQPARLPQASPRPYSSVPAGSEKPPKGSSYNPPLPPLKISTSNGSPGFEYHQPGDKFEA 2311
Query: 70 HQQVELLGMILGTETSNKYEIKNSLGQRIYFAVEES-ICFNR 110
+Q +L G TS+ IK+ Y+A++E+ IC ++
Sbjct: 2312 SKQNDLGGC---NGTSSMAVIKD------YYALKENEICVSQ 2344
>gi|68362740 kalirin, RhoGEF kinase isoform 3 [Homo sapiens]
Length = 1289
Score = 32.0 bits (71), Expect = 0.59
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 11 RGLPGFLPGA-PDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIII 69
R P LP A P P S+PA S + + PLP + T + PG EY D
Sbjct: 555 RSQPARLPQASPRPYSSVPAGSEKPPKGSSYNPPLPPLKISTSNGSPGFEYHQPGDKFEA 614
Query: 70 HQQVELLGMILGTETSNKYEIKNSLGQRIYFAVEES-ICFNR 110
+Q +L G TS+ IK+ Y+A++E+ IC ++
Sbjct: 615 SKQNDLGGC---NGTSSMAVIKD------YYALKENEICVSQ 647
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 31.6 bits (70), Expect = 0.77
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 18 PGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPP 56
PGAP+P Q +PASS+ +Q +L + +P+ L T + PP
Sbjct: 3083 PGAPNPAQ-VPASSDSPSQQPKLQMRVPAVRLKTPTKPP 3120
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 17 LPGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLS 62
LPG P QSLPAS P P P FL + L PGL+ L+
Sbjct: 260 LPGFGPPAQSLPASYTPP--------PPPPPFLNSPPLGPGLQPLA 297
>gi|29826294 golgi reassembly stacking protein 2 [Homo sapiens]
Length = 452
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 12 GLPGFL-PGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPP 56
GLP + PG P P S+P + PG LPLPS FLP+ L P
Sbjct: 332 GLPELVNPGLP-PLPSMPPRNLPGIAP----LPLPSEFLPSFPLVP 372
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 30.0 bits (66), Expect = 2.2
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1 MASKDAQNQRRGLPGFLPGAPDPD-QSLPASSNPGNQAWQLSLPLPSSFLPTVSLPP 56
M S + Q+ P +P P P Q SS P + P PSSFLP+ S P
Sbjct: 432 MLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSPSSFLPSPSPQP 488
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 30.0 bits (66), Expect = 2.2
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1 MASKDAQNQRRGLPGFLPGAPDPD-QSLPASSNPGNQAWQLSLPLPSSFLPTVSLPP 56
M S + Q+ P +P P P Q SS P + P PSSFLP+ S P
Sbjct: 392 MLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSPSSFLPSPSPQP 448
>gi|224458301 family with sequence similarity 186, member A [Homo
sapiens]
Length = 2351
Score = 29.6 bits (65), Expect = 2.9
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 17 LPGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVELL 76
+P P Q+L S P QA +L +PL + + L+ QL + + QQ + L
Sbjct: 1193 IPLTPQQAQALRVSLTP-QQAQELGIPLTPQQAQALGITLTLQQAQQLGIPLTPQQAQAL 1251
Query: 77 GMIL 80
G+ L
Sbjct: 1252 GITL 1255
Score = 28.5 bits (62), Expect = 6.5
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 36 QAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVELLGMILGTETSNKYEI 90
QA +L +PL + +P + +L + + QQ + LGM L T+ + + I
Sbjct: 1355 QAQELGIPLTPQHAQALGMPLTTQQAQELGIPLTPQQAQALGMPLTTQQAQELGI 1409
Score = 28.1 bits (61), Expect = 8.5
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 17 LPGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVELL 76
+P P Q+L + P QA +L +PL T+ +P + L + QQ + L
Sbjct: 1265 IPLTPQQAQALGITLTP-KQAQELGIPLNPQQAQTLGIPLTPKQAQALGIPFTPQQAQAL 1323
Query: 77 GMILGTETSNKYEI 90
G+ L + + EI
Sbjct: 1324 GIPLTPQQAQTQEI 1337
>gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [Homo
sapiens]
Length = 4515
Score = 29.6 bits (65), Expect = 2.9
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 171 PFLPKFTIQNANKEDILKIVGP-CVTCGCFGDVDFEVKTINEKLTIGKI-SKYWSGFVND 228
P P T + +D+ K +G CV CF D+D++ I K G + S WS F D
Sbjct: 1546 PAGPAGTGKTETVKDLAKSLGKHCVVFNCFEDLDYK---IVRKFFFGLVQSGAWSCF--D 1600
Query: 229 VFTNADNFGIHVPADLDVTVKAA 251
F D + V A +T+KAA
Sbjct: 1601 EFNLIDLEVLSVIASQILTIKAA 1623
>gi|237820624 pleckstrin homology domain containing, family N member
1 isoform b [Homo sapiens]
Length = 576
Score = 29.3 bits (64), Expect = 3.8
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 1 MASKDAQNQRRGLPGFLPGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEY 60
+ S+ AQ R P PD Q + ++ + W LPL P S PG ++
Sbjct: 491 LQSRAAQRHRGSAKDGGPQPPDAPQLVSSAREGSPEPW---LPLTDGRSPRRSRDPGYDH 547
Query: 61 LSQLDLIIIHQQVELLG 77
L L HQ+ LG
Sbjct: 548 LWDETLSSSHQKCPQLG 564
>gi|237820622 pleckstrin homology domain containing, family N member
1 isoform a [Homo sapiens]
Length = 611
Score = 29.3 bits (64), Expect = 3.8
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 1 MASKDAQNQRRGLPGFLPGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEY 60
+ S+ AQ R P PD Q + ++ + W LPL P S PG ++
Sbjct: 526 LQSRAAQRHRGSAKDGGPQPPDAPQLVSSAREGSPEPW---LPLTDGRSPRRSRDPGYDH 582
Query: 61 LSQLDLIIIHQQVELLG 77
L L HQ+ LG
Sbjct: 583 LWDETLSSSHQKCPQLG 599
>gi|148833515 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 29.3 bits (64), Expect = 3.8
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 18 PGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVELLG 77
P APDP P NP LS L LP SLPP E L DL+I + L
Sbjct: 182 PPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP-ASLPPAGEQLLP-DLLISPHMLPLTD 239
Query: 78 MILGTETSNK----YEIKNSLGQRIYFAVEES 105
+ + + + I N G R++++ E+
Sbjct: 240 LEIKFQYRGRPPRALTISNPHGCRLFYSQLEA 271
>gi|148833496 interferon regulatory factor 5 isoform b [Homo
sapiens]
Length = 498
Score = 29.3 bits (64), Expect = 3.8
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 18 PGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVELLG 77
P APDP P NP LS L LP SLPP E L DL+I + L
Sbjct: 192 PPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP-ASLPPAGEQLLP-DLLISPHMLPLTD 249
Query: 78 MILGTETSNK----YEIKNSLGQRIYFAVEES 105
+ + + + I N G R++++ E+
Sbjct: 250 LEIKFQYRGRPPRALTISNPHGCRLFYSQLEA 281
>gi|148833494 interferon regulatory factor 5 isoform d [Homo
sapiens]
Length = 514
Score = 29.3 bits (64), Expect = 3.8
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 18 PGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVELLG 77
P APDP P NP LS L LP SLPP E L DL+I + L
Sbjct: 208 PPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP-ASLPPAGEQLLP-DLLISPHMLPLTD 265
Query: 78 MILGTETSNK----YEIKNSLGQRIYFAVEES 105
+ + + + I N G R++++ E+
Sbjct: 266 LEIKFQYRGRPPRALTISNPHGCRLFYSQLEA 297
>gi|148833492 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 29.3 bits (64), Expect = 3.8
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 18 PGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVELLG 77
P APDP P NP LS L LP SLPP E L DL+I + L
Sbjct: 182 PPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP-ASLPPAGEQLLP-DLLISPHMLPLTD 239
Query: 78 MILGTETSNK----YEIKNSLGQRIYFAVEES 105
+ + + + I N G R++++ E+
Sbjct: 240 LEIKFQYRGRPPRALTISNPHGCRLFYSQLEA 271
>gi|148833488 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 29.3 bits (64), Expect = 3.8
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 18 PGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVELLG 77
P APDP P NP LS L LP SLPP E L DL+I + L
Sbjct: 182 PPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP-ASLPPAGEQLLP-DLLISPHMLPLTD 239
Query: 78 MILGTETSNK----YEIKNSLGQRIYFAVEES 105
+ + + + I N G R++++ E+
Sbjct: 240 LEIKFQYRGRPPRALTISNPHGCRLFYSQLEA 271
>gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens]
Length = 498
Score = 29.3 bits (64), Expect = 3.8
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 18 PGAPDPDQSLPASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVELLG 77
P APDP P NP LS L LP SLPP E L DL+I + L
Sbjct: 192 PPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP-ASLPPAGEQLLP-DLLISPHMLPLTD 249
Query: 78 MILGTETSNK----YEIKNSLGQRIYFAVEES 105
+ + + + I N G R++++ E+
Sbjct: 250 LEIKFQYRGRPPRALTISNPHGCRLFYSQLEA 281
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,352,844
Number of Sequences: 37866
Number of extensions: 555289
Number of successful extensions: 1663
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1618
Number of HSP's gapped (non-prelim): 65
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.