Guide to the Human Genome
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Name: FAM65C Sequence: fasta or formatted (946aa) NCBI GI: 109689705
Description:

hypothetical protein LOC140876

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         71           3
 C cysteine            2.5         24           1
 D aspartate           4.4         42           2
 E glutamate           8.1         77           3
 F phenylalanine       3.8         36           2
 G glycine             7.2         68           2
 H histidine           2.2         21           1
 I isoleucine          3.1         29           2
 K lysine              4.8         45           2
 L leucine            13.0        123           3
 M methionine          1.5         14           1
 N asparagine          1.5         14           1
 P proline             5.3         50           3
 Q glutamine           5.9         56           2
 R arginine            7.8         74           2
 S serine              8.8         83           3
 T threonine           5.0         47           2
 V valine              5.0         47           2
 W tryptophan          1.0          9           1
 Y tyrosine            1.7         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC140876 
FAM65B                0.274   hypothetical protein LOC9750 isoform 1 
FAM65B                0.175   hypothetical protein LOC9750 isoform 2 
FAM65A                0.158   hypothetical protein LOC79567 
FOSB                  0.008   FBJ murine osteosarcoma viral oncogene homolog B is...
FOSB                  0.008   FBJ murine osteosarcoma viral oncogene homolog B is...
HECW2                 0.007   HECT, C2 and WW domain containing E3 ubiquitin prote...
PLEKHA6               0.005   phosphoinositol 3-phosphate-binding protein-3 
RGPD3                 0.005   RANBP2-like and GRIP domain containing 3 
RGPD4                 0.005   RANBP2-like and GRIP domain containing 4 
AKAP11                0.005   A-kinase anchor protein 11 
UMODL1                0.005   uromodulin-like 1 isoform 2 precursor 
ACRV1                 0.005   acrosomal vesicle protein 1 isoform b precursor [Homo...
FAM169A               0.005   hypothetical protein LOC26049 
ACRV1                 0.005   acrosomal vesicle protein 1 isoform a precursor [Homo...
KIAA1462              0.005   hypothetical protein LOC57608 
RGPD1                 0.005   RANBP2-like and GRIP domain containing 1 
MAST1                 0.004   microtubule associated serine/threonine kinase 1 [Ho...
TCF4                  0.004   transcription factor 4 isoform b 
TCF4                  0.004   transcription factor 4 isoform a 
MAPK8IP1              0.004   mitogen-activated protein kinase 8 interacting protei...
MTSS1L                0.004   metastasis suppressor 1-like 
PSMC3IP               0.004   PSMC3 interacting protein isoform 1 
DHX57                 0.004   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
EGLN2                 0.004   EGL nine (C.elegans) homolog 2 
EGLN2                 0.004   EGL nine (C.elegans) homolog 2 
LOC100291794          0.004   PREDICTED: hypothetical protein XP_002345269 
LOC100290152          0.004   PREDICTED: hypothetical protein XP_002348038 
LOC100288507          0.004   PREDICTED: hypothetical protein XP_002343741 
CTAGE4                0.004   CTAGE family, member 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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