Guide to the Human Genome
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Name: FAM65B Sequence: fasta or formatted (1068aa) NCBI GI: 164414421
Description:

hypothetical protein LOC9750 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {591aa} hypothetical protein LOC9750 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         77           3
 C cysteine            1.6         17           2
 D aspartate           5.0         53           2
 E glutamate           9.3         99           3
 F phenylalanine       3.9         42           2
 G glycine             5.4         58           3
 H histidine           2.0         21           1
 I isoleucine          3.3         35           2
 K lysine              6.1         65           2
 L leucine            12.0        128           3
 M methionine          1.9         20           1
 N asparagine          3.7         40           3
 P proline             4.4         47           2
 Q glutamine           4.4         47           2
 R arginine            5.1         54           2
 S serine             10.8        115           3
 T threonine           5.5         59           2
 V valine              5.7         61           2
 W tryptophan          0.5          5           1
 Y tyrosine            2.3         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC9750 isoform 1 
FAM65B                0.539   hypothetical protein LOC9750 isoform 2 
FAM65C                0.247   hypothetical protein LOC140876 
FAM65A                0.191   hypothetical protein LOC79567 
CCDC123               0.008   coiled-coil domain containing 123 
CCDC96                0.007   coiled-coil domain containing 96 
IWS1                  0.007   IWS1 homolog 
BANK1                 0.007   B-cell scaffold protein with ankyrin repeats 1 isof...
BANK1                 0.007   B-cell scaffold protein with ankyrin repeats 1 isof...
BANK1                 0.007   B-cell scaffold protein with ankyrin repeats 1 isof...
ALPK3                 0.007   alpha-kinase 3 
ZEB2                  0.006   zinc finger homeobox 1b 
DSPP                  0.006   dentin sialophosphoprotein preproprotein 
TMF1                  0.006   TATA element modulatory factor 1 
KIF5C                 0.006   kinesin family member 5C 
C17orf85              0.005   ELG protein isoform b 
C17orf85              0.005   ELG protein isoform a 
MYO10                 0.005   myosin X 
SPHKAP                0.005   sphingosine kinase type 1-interacting protein isofo...
BAT2D1                0.005   HBxAg transactivated protein 2 
TPM4                  0.005   tropomyosin 4 isoform 1 
TAOK1                 0.005   TAO kinase 1 
IFT74                 0.005   coiled-coil domain containing 2 isoform a 
IFT74                 0.005   coiled-coil domain containing 2 isoform a 
IFT74                 0.005   coiled-coil domain containing 2 isoform a 
RASSF8                0.005   Ras association (RalGDS/AF-6) domain family (N-termi...
TOX3                  0.004   TOX high mobility group box family member 3 isoform...
TOX3                  0.004   TOX high mobility group box family member 3 isoform...
DCTN1                 0.004   dynactin 1 isoform 4 
DCTN1                 0.004   dynactin 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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