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Search of human proteins with 109637779
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109637779 centromere protein A isoform b [Homo sapiens]
(114 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109637779 centromere protein A isoform b [Homo sapiens] 231 7e-62
gi|4502775 centromere protein A isoform a [Homo sapiens] 217 1e-57
gi|4885385 H3 histone, family 3B [Homo sapiens] 83 5e-17
gi|4504279 H3 histone, family 3A [Homo sapiens] 83 5e-17
gi|53793688 histone cluster 2, H3a [Homo sapiens] 82 1e-16
gi|31742503 histone cluster 2, H3c [Homo sapiens] 82 1e-16
gi|183076548 histone cluster 2, H3d [Homo sapiens] 82 1e-16
gi|4504287 histone cluster 1, H3e [Homo sapiens] 81 2e-16
gi|4504295 histone cluster 1, H3h [Homo sapiens] 81 2e-16
gi|4504289 histone cluster 1, H3i [Homo sapiens] 81 2e-16
gi|4504281 histone cluster 1, H3a [Homo sapiens] 81 2e-16
gi|10440560 histone cluster 1, H3f [Homo sapiens] 81 2e-16
gi|21071021 histone cluster 1, H3d [Homo sapiens] 81 2e-16
gi|4504297 histone cluster 1, H3b [Homo sapiens] 81 2e-16
gi|4504293 histone cluster 1, H3j [Homo sapiens] 81 2e-16
gi|4504285 histone cluster 1, H3c [Homo sapiens] 81 2e-16
gi|4504291 H3 histone family, member H [Homo sapiens] 81 2e-16
gi|169167761 PREDICTED: similar to HIStone family member (his-72... 80 5e-16
gi|88987392 PREDICTED: similar to HIStone family member (his-72)... 80 5e-16
gi|41147170 PREDICTED: similar to HIStone family member (his-72)... 80 5e-16
gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens] 80 5e-16
gi|4504299 histone cluster 3, H3 [Homo sapiens] 79 8e-16
gi|188528667 histone H3-like [Homo sapiens] 76 7e-15
gi|239742093 PREDICTED: similar to histone H3.3B [Homo sapiens] 70 5e-13
gi|169167750 PREDICTED: similar to hCG1642908 [Homo sapiens] 45 2e-05
gi|169168508 PREDICTED: similar to hCG1642908 [Homo sapiens] 45 2e-05
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 37 0.004
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 37 0.004
gi|126722969 centromere protein T [Homo sapiens] 35 0.010
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 35 0.010
>gi|109637779 centromere protein A isoform b [Homo sapiens]
Length = 114
Score = 231 bits (590), Expect = 7e-62
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL 60
MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL
Sbjct: 1 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL 60
Query: 61 LIRKLPFSRLAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEEGLG 114
LIRKLPFSRLAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEEGLG
Sbjct: 61 LIRKLPFSRLAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEEGLG 114
>gi|4502775 centromere protein A isoform a [Homo sapiens]
Length = 140
Score = 217 bits (553), Expect = 1e-57
Identities = 114/140 (81%), Positives = 114/140 (81%), Gaps = 26/140 (18%)
Query: 1 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL 60
MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL
Sbjct: 1 MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL 60
Query: 61 LIRKLPFSRL--------------------------AAEAFLVHLFEDAYLLTLHAGRVT 94
LIRKLPFSRL AAEAFLVHLFEDAYLLTLHAGRVT
Sbjct: 61 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT 120
Query: 95 LFPKDVQLARRIRGLEEGLG 114
LFPKDVQLARRIRGLEEGLG
Sbjct: 121 LFPKDVQLARRIRGLEEGLG 140
>gi|4885385 H3 histone, family 3B [Homo sapiens]
Length = 136
Score = 82.8 bits (203), Expect = 5e-17
Identities = 57/130 (43%), Positives = 69/130 (53%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + PS G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPSTGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A+EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|4504279 H3 histone, family 3A [Homo sapiens]
Length = 136
Score = 82.8 bits (203), Expect = 5e-17
Identities = 57/130 (43%), Positives = 69/130 (53%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + PS G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPSTGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A+EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|53793688 histone cluster 2, H3a [Homo sapiens]
Length = 136
Score = 81.6 bits (200), Expect = 1e-16
Identities = 56/130 (43%), Positives = 69/130 (53%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A+EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|31742503 histone cluster 2, H3c [Homo sapiens]
Length = 136
Score = 81.6 bits (200), Expect = 1e-16
Identities = 56/130 (43%), Positives = 69/130 (53%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A+EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|183076548 histone cluster 2, H3d [Homo sapiens]
Length = 136
Score = 81.6 bits (200), Expect = 1e-16
Identities = 56/130 (43%), Positives = 69/130 (53%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A+EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|4504287 histone cluster 1, H3e [Homo sapiens]
Length = 136
Score = 81.3 bits (199), Expect = 2e-16
Identities = 56/130 (43%), Positives = 68/130 (52%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|4504295 histone cluster 1, H3h [Homo sapiens]
Length = 136
Score = 81.3 bits (199), Expect = 2e-16
Identities = 56/130 (43%), Positives = 68/130 (52%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|4504289 histone cluster 1, H3i [Homo sapiens]
Length = 136
Score = 81.3 bits (199), Expect = 2e-16
Identities = 56/130 (43%), Positives = 68/130 (52%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|4504281 histone cluster 1, H3a [Homo sapiens]
Length = 136
Score = 81.3 bits (199), Expect = 2e-16
Identities = 56/130 (43%), Positives = 68/130 (52%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|10440560 histone cluster 1, H3f [Homo sapiens]
Length = 136
Score = 81.3 bits (199), Expect = 2e-16
Identities = 56/130 (43%), Positives = 68/130 (52%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|21071021 histone cluster 1, H3d [Homo sapiens]
Length = 136
Score = 81.3 bits (199), Expect = 2e-16
Identities = 56/130 (43%), Positives = 68/130 (52%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|4504297 histone cluster 1, H3b [Homo sapiens]
Length = 136
Score = 81.3 bits (199), Expect = 2e-16
Identities = 56/130 (43%), Positives = 68/130 (52%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|4504293 histone cluster 1, H3j [Homo sapiens]
Length = 136
Score = 81.3 bits (199), Expect = 2e-16
Identities = 56/130 (43%), Positives = 68/130 (52%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|4504285 histone cluster 1, H3c [Homo sapiens]
Length = 136
Score = 81.3 bits (199), Expect = 2e-16
Identities = 56/130 (43%), Positives = 68/130 (52%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|4504291 H3 histone family, member H [Homo sapiens]
Length = 136
Score = 81.3 bits (199), Expect = 2e-16
Identities = 56/130 (43%), Positives = 68/130 (52%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A EA+LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|169167761 PREDICTED: similar to HIStone family member (his-72)
[Homo sapiens]
Length = 136
Score = 79.7 bits (195), Expect = 5e-16
Identities = 53/129 (41%), Positives = 68/129 (52%), Gaps = 31/129 (24%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62
R++ +APR+ P T +R P G H R + G L +EIRK QKST LL+
Sbjct: 9 RKATAWQAPRK----PLATKAAGKRAPPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A+EA+LV LFED L +HA RVT+ P+
Sbjct: 64 RKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIMPR 123
Query: 99 DVQLARRIR 107
D+QLARR+R
Sbjct: 124 DMQLARRLR 132
>gi|88987392 PREDICTED: similar to HIStone family member (his-72)
[Homo sapiens]
Length = 136
Score = 79.7 bits (195), Expect = 5e-16
Identities = 53/129 (41%), Positives = 68/129 (52%), Gaps = 31/129 (24%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62
R++ +APR+ P T +R P G H R + G L +EIRK QKST LL+
Sbjct: 9 RKATAWQAPRK----PLATKAAGKRAPPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A+EA+LV LFED L +HA RVT+ P+
Sbjct: 64 RKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIMPR 123
Query: 99 DVQLARRIR 107
D+QLARR+R
Sbjct: 124 DMQLARRLR 132
>gi|41147170 PREDICTED: similar to HIStone family member (his-72)
[Homo sapiens]
Length = 136
Score = 79.7 bits (195), Expect = 5e-16
Identities = 53/129 (41%), Positives = 68/129 (52%), Gaps = 31/129 (24%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62
R++ +APR+ P T +R P G H R + G L +EIRK QKST LL+
Sbjct: 9 RKATAWQAPRK----PLATKAAGKRAPPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A+EA+LV LFED L +HA RVT+ P+
Sbjct: 64 RKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIMPR 123
Query: 99 DVQLARRIR 107
D+QLARR+R
Sbjct: 124 DMQLARRLR 132
>gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens]
Length = 147
Score = 79.7 bits (195), Expect = 5e-16
Identities = 56/136 (41%), Positives = 71/136 (52%), Gaps = 33/136 (24%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62
R++ +APR+ P T +R G H R + G L +EIRK QKST LL+
Sbjct: 9 RKATAWQAPRK----PLATKAARKRASPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A+EA+LV LFED L +HA RVT+ P+
Sbjct: 64 RKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIMPR 123
Query: 99 DVQLARRIRGLEEGLG 114
D+QLARR+RG EG G
Sbjct: 124 DMQLARRLRG--EGAG 137
>gi|4504299 histone cluster 3, H3 [Homo sapiens]
Length = 136
Score = 79.0 bits (193), Expect = 8e-16
Identities = 55/130 (42%), Positives = 68/130 (52%), Gaps = 31/130 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
R+S +APR++ T + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 9 RKSTGGKAPRKQ----LATKVARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 63
Query: 63 RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98
RKLPF RL A E++LV LFED L +HA RVT+ PK
Sbjct: 64 RKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIMPK 123
Query: 99 DVQLARRIRG 108
D+QLARRIRG
Sbjct: 124 DIQLARRIRG 133
>gi|188528667 histone H3-like [Homo sapiens]
Length = 135
Score = 75.9 bits (185), Expect = 7e-15
Identities = 54/129 (41%), Positives = 68/129 (52%), Gaps = 30/129 (23%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSL-GASSHQHSRRRQGWLKEIRKLQKSTHLLIR 63
R+S +APR++ T + PS G H++ R L+EIR+ QKST LLIR
Sbjct: 9 RKSTGGKAPRKQ----LATKAARKSTPSTCGVKPHRY-RPGTVALREIRRYQKSTELLIR 63
Query: 64 KLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPKD 99
KLPF RL A+EA+LV L ED L +HA RVT+ PKD
Sbjct: 64 KLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKD 123
Query: 100 VQLARRIRG 108
+QLARRIRG
Sbjct: 124 IQLARRIRG 132
>gi|239742093 PREDICTED: similar to histone H3.3B [Homo sapiens]
Length = 141
Score = 69.7 bits (169), Expect = 5e-13
Identities = 46/120 (38%), Positives = 61/120 (50%), Gaps = 25/120 (20%)
Query: 14 RRRSPSPTPTPGPSRRGPSLGA-SSHQHSRRRQGWLKEIRKLQKSTHLLIRKLPFSRL-- 70
R+ + T + PS G H R L+EIR+ QK+T LLIRKL F RL
Sbjct: 19 RKAARKQLGTKAAHKSAPSTGGVKKPHHYRPGTVALREIRRYQKATELLIRKLRFQRLVQ 78
Query: 71 ----------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 108
A+EA+LV LFED+ L +HA R+T+ PK++QLARRI+G
Sbjct: 79 EIAQDLKTDLRFQSAAIGALQEASEAYLVGLFEDSNLCAIHAKRLTIMPKEIQLARRIQG 138
>gi|169167750 PREDICTED: similar to hCG1642908 [Homo sapiens]
Length = 193
Score = 44.7 bits (104), Expect = 2e-05
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62
R++ +APR+ P T +R G H R + G L +EIRK QKST LL+
Sbjct: 54 RKATAWQAPRK----PLATKAARKRASPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 108
Query: 63 RKLPFSRLAAE 73
RKLPF RL E
Sbjct: 109 RKLPFQRLVRE 119
>gi|169168508 PREDICTED: similar to hCG1642908 [Homo sapiens]
Length = 193
Score = 44.7 bits (104), Expect = 2e-05
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62
R++ +APR+ P T +R G H R + G L +EIRK QKST LL+
Sbjct: 54 RKATAWQAPRK----PLATKAARKRASPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 108
Query: 63 RKLPFSRLAAE 73
RKLPF RL E
Sbjct: 109 RKLPFQRLVRE 119
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 36.6 bits (83), Expect = 0.004
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 10 PEAPRRRSPSPTPTPGPSRRGPSLGASSHQHS 41
P PR+ SP PTP P P RG +LG S + S
Sbjct: 207 PGGPRQPSPGPTPPPFPGNRGTALGGGSIRQS 238
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 3 PRRRSRKPEAPRRRSPS-----PTPTPGPSRRGP 31
P ++ KP P PS P P P PSR GP
Sbjct: 285 PPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGP 318
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 36.6 bits (83), Expect = 0.004
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 10 PEAPRRRSPSPTPTPGPSRRGPSLGASSHQHS 41
P PR+ SP PTP P P RG +LG S + S
Sbjct: 207 PGGPRQPSPGPTPPPFPGNRGTALGGGSIRQS 238
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 3 PRRRSRKPEAPRRRSPS-----PTPTPGPSRRGP 31
P ++ KP P PS P P P PSR GP
Sbjct: 285 PPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGP 318
>gi|126722969 centromere protein T [Homo sapiens]
Length = 561
Score = 35.4 bits (80), Expect = 0.010
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 13 PRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHLLIRKLPFSRLAA 72
PR R+ P P P + G S H + + ++ +K+ ++ + L
Sbjct: 442 PRPRTTGPRPRQDPHKAGLS-------HYVKLFSFYAKMPMERKALEMVEKCL------- 487
Query: 73 EAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 109
+ + HL +D + HAGR T+ P+D++L R +GL
Sbjct: 488 DKYFQHLCDDLEVFAAHAGRKTVKPEDLELLMRRQGL 524
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 35.4 bits (80), Expect = 0.010
Identities = 25/52 (48%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 2 GPRRRS-RKPEAPRRRSPSP--------TPTPGPSRRGPSLGASSHQHSRRR 44
G RRRS P RRRSPSP TPTP P RR PS S RR
Sbjct: 544 GRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRR 595
Score = 33.1 bits (74), Expect = 0.049
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 3 PRRRSRKPEAPRRRSPSPTP---TPGPSRRGPSL 33
PRRR PRRR+PSP P +P P R P +
Sbjct: 567 PRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPI 600
Score = 31.2 bits (69), Expect = 0.18
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 12/41 (29%)
Query: 3 PRRRSRKPEAPRRRSPSP-----------TPTPGPSRRGPS 32
PRRR+ P PRRRSPSP +P+P P RR S
Sbjct: 577 PRRRTPSPP-PRRRSPSPRRYSPPIQRRYSPSPPPKRRTAS 616
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 5 RRSRKPEAPRRRSPSPTP-------TPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKS 57
R +R P+ +R SPSP P +P P RRG S SS Q + + IR++ ++
Sbjct: 671 REARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGAS---SSPQRRQSPSPSTRPIRRVSRT 727
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 3 PRRRSR---KPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKS 57
PRRR R + +PRRR PSP P P RR P RR + ++ R+ S
Sbjct: 298 PRRRHRSRSRSYSPRRR-PSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSAS 354
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 3 PRRRSRKPEAPRRRSPSPTPTPGPSRRGPS 32
PR+R ++ RR SP+P P RR PS
Sbjct: 533 PRKRQKETSPRGRRRRSPSPPPTRRRRSPS 562
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 3 PRRRSRKPEAP--RRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRK 53
P+RR+ P P RR SPSP P S P SS RR + RK
Sbjct: 610 PKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRK 662
Score = 29.3 bits (64), Expect = 0.70
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 10 PEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTH 59
P P +++ SPTP+P P R G + ++ + K+ + + H
Sbjct: 782 PAVPVKKAKSPTPSPSPPRNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKH 831
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 4 RRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQ 45
R RSR P + RSPSP P RR SH S R +
Sbjct: 166 RERSRSPRRRKSRSPSPRRRSSPVRRERK---RSHSRSPRHR 204
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 3 PRRRSRK---PEAPRRRSPSPTPTPGPSRR 29
P RR RK +PR R+ S +P+P P ++
Sbjct: 188 PVRRERKRSHSRSPRHRTKSRSPSPAPEKK 217
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 4 RRRSRKPEAPRRRS-PSPTPTPGPSRRGPSLGASSHQHSRRR 44
RR S PRRR PSP TP P R S++ + R
Sbjct: 386 RRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSR 427
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,502,806
Number of Sequences: 37866
Number of extensions: 290803
Number of successful extensions: 4835
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 3996
Number of HSP's gapped (non-prelim): 955
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.