CENPA 461

Name: CENPA	Sequence: fasta or formatted (114aa)		NCBI GI: 109637779
Description: centromere protein A isoform b		Referenced in: Centromere Proteins Histones, Related Proteins, and Modifying Enzymes
Other entries for this name: alt prot [140aa] centromere protein A isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.0 8 2 C cysteine 0.0 0 0 D aspartate 1.8 2 1 E glutamate 5.3 6 2 F phenylalanine 3.5 4 1 G glycine 7.9 9 1 H histidine 4.4 5 1 I isoleucine 2.6 3 1 K lysine 5.3 6 1 L leucine 14.0 16 2 M methionine 0.9 1 1 N asparagine 0.0 0 0 P proline 9.6 11 1 Q glutamine 3.5 4 1 R arginine 16.7 19 3 S serine 8.8 10 2 T threonine 4.4 5 1 V valine 2.6 3 1 W tryptophan 0.9 1 1 Y tyrosine 0.9 1 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 centromere protein A isoform b CENPA 0.932 centromere protein A isoform a H3F3B 0.282 H3 histone, family 3B H3F3A 0.282 H3 histone, family 3A HIST2H3A 0.277 histone cluster 2, H3a HIST2H3C 0.277 histone cluster 2, H3c HIST2H3D 0.277 histone cluster 2, H3d HIST1H3E 0.272 histone cluster 1, H3e HIST1H3H 0.272 histone cluster 1, H3h HIST1H3I 0.272 histone cluster 1, H3i HIST1H3A 0.272 histone cluster 1, H3a HIST1H3F 0.272 histone cluster 1, H3f HIST1H3D 0.272 histone cluster 1, H3d HIST1H3B 0.272 histone cluster 1, H3b HIST1H3J 0.272 histone cluster 1, H3j HIST1H3C 0.272 histone cluster 1, H3c HIST1H3G 0.272 H3 histone family, member H LOC391769 0.267 PREDICTED: similar to HIStone family member (his-72... LOC391769 0.267 PREDICTED: similar to HIStone family member (his-72)... LOC391769 0.267 PREDICTED: similar to HIStone family member (his-72)... LOC340096 0.267 PREDICTED: similar to hCG1642908 HIST3H3 0.262 histone cluster 3, H3 LOC440093 0.248 histone H3-like LOC644950 0.218 PREDICTED: similar to histone H3.3B LOC340096 0.097 PREDICTED: similar to hCG1642908 LOC340096 0.097 PREDICTED: similar to hCG1642908 WIPF1 0.058 WAS/WASL interacting protein family, member 1 [Homo... WIPF1 0.058 WAS/WASL interacting protein family, member 1 CENPT 0.049 centromere protein T SRRM1 0.049 serine/arginine repetitive matrix 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.