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Search of human proteins with 14249524
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14249524 transmembrane protein 87B [Homo sapiens]
(555 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14249524 transmembrane protein 87B [Homo sapiens] 1120 0.0
gi|31377765 transmembrane protein 87A isoform 1 [Homo sapiens] 447 e-126
gi|122937301 G protein-coupled receptor 108 isoform 1 [Homo sapi... 70 7e-12
gi|56711308 G protein-coupled receptor 107 isoform 3 [Homo sapiens] 69 1e-11
gi|130489591 G protein-coupled receptor 108 isoform 2 [Homo sapi... 69 1e-11
gi|211971060 G protein-coupled receptor 107 isoform 2 [Homo sapi... 63 6e-10
gi|211971058 G protein-coupled receptor 107 isoform 1 [Homo sapi... 52 1e-06
gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens] 31 2.6
gi|46240864 sperm associated antigen 17 [Homo sapiens] 30 4.4
gi|4759128 solute carrier family 24 (sodium/potassium/calcium ex... 30 5.8
gi|160333222 transmembrane protein 87A isoform 2 [Homo sapiens] 30 5.8
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 29 9.9
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 29 9.9
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 29 9.9
gi|122937412 ubiquitin specific peptidase 45 [Homo sapiens] 29 9.9
>gi|14249524 transmembrane protein 87B [Homo sapiens]
Length = 555
Score = 1120 bits (2898), Expect = 0.0
Identities = 555/555 (100%), Positives = 555/555 (100%)
Query: 1 MVAACRSVAGLLPRRRRCFPARAPLLRVALCLLCWTPAAVRAVPELGLWLETVNDKSGPL 60
MVAACRSVAGLLPRRRRCFPARAPLLRVALCLLCWTPAAVRAVPELGLWLETVNDKSGPL
Sbjct: 1 MVAACRSVAGLLPRRRRCFPARAPLLRVALCLLCWTPAAVRAVPELGLWLETVNDKSGPL 60
Query: 61 IFRKTMFNSTDIKLSVKSFHCSGPVKFTIVWHLKYHTCHNEHSNLEELFQKHKLSVDEDF 120
IFRKTMFNSTDIKLSVKSFHCSGPVKFTIVWHLKYHTCHNEHSNLEELFQKHKLSVDEDF
Sbjct: 61 IFRKTMFNSTDIKLSVKSFHCSGPVKFTIVWHLKYHTCHNEHSNLEELFQKHKLSVDEDF 120
Query: 121 CHYLKNDNCWTTKNENLDCNSDSQVFPSLNNKELINIRNVSNQERSMDVVARTQKDGFHI 180
CHYLKNDNCWTTKNENLDCNSDSQVFPSLNNKELINIRNVSNQERSMDVVARTQKDGFHI
Sbjct: 121 CHYLKNDNCWTTKNENLDCNSDSQVFPSLNNKELINIRNVSNQERSMDVVARTQKDGFHI 180
Query: 181 FIVSIKTENTDASWNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSAC 240
FIVSIKTENTDASWNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSAC
Sbjct: 181 FIVSIKTENTDASWNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSAC 240
Query: 241 YWKDILRIQFWIAAVIFLGMLEKAVFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARL 300
YWKDILRIQFWIAAVIFLGMLEKAVFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARL
Sbjct: 241 YWKDILRIQFWIAAVIFLGMLEKAVFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARL 300
Query: 301 LVIIVSLGYGIVKPRLGTVMHRVIGLGLLYLIFAAVEGVMRVIGGSNHLAVVLDDIILAV 360
LVIIVSLGYGIVKPRLGTVMHRVIGLGLLYLIFAAVEGVMRVIGGSNHLAVVLDDIILAV
Sbjct: 301 LVIIVSLGYGIVKPRLGTVMHRVIGLGLLYLIFAAVEGVMRVIGGSNHLAVVLDDIILAV 360
Query: 361 IDSIFVWFIFISLAQTMKTLRLRKNTVKFSLYRHFKNTLIFAVLASIVFMGWTTKTFRIA 420
IDSIFVWFIFISLAQTMKTLRLRKNTVKFSLYRHFKNTLIFAVLASIVFMGWTTKTFRIA
Sbjct: 361 IDSIFVWFIFISLAQTMKTLRLRKNTVKFSLYRHFKNTLIFAVLASIVFMGWTTKTFRIA 420
Query: 421 KCQSDWMERWVDDAFWSFLFSLILIVIMFLWRPSANNQRYAFMPLIDDSDDEIEEFMVTS 480
KCQSDWMERWVDDAFWSFLFSLILIVIMFLWRPSANNQRYAFMPLIDDSDDEIEEFMVTS
Sbjct: 421 KCQSDWMERWVDDAFWSFLFSLILIVIMFLWRPSANNQRYAFMPLIDDSDDEIEEFMVTS 480
Query: 481 ENLTEGIKLRASKSVSNGTAKPATSENFDEDLKWVEENIPSSFTDVALPVLVDSDEEIMT 540
ENLTEGIKLRASKSVSNGTAKPATSENFDEDLKWVEENIPSSFTDVALPVLVDSDEEIMT
Sbjct: 481 ENLTEGIKLRASKSVSNGTAKPATSENFDEDLKWVEENIPSSFTDVALPVLVDSDEEIMT 540
Query: 541 RSEMAEKMFSSEKIM 555
RSEMAEKMFSSEKIM
Sbjct: 541 RSEMAEKMFSSEKIM 555
>gi|31377765 transmembrane protein 87A isoform 1 [Homo sapiens]
Length = 555
Score = 447 bits (1151), Expect = e-126
Identities = 256/532 (48%), Positives = 328/532 (61%), Gaps = 28/532 (5%)
Query: 37 PAAVRAVPELGLWLETVNDKSGPLIFRKTMFNSTDIKLSVKSFHCSGPVKFTIVWHLKYH 96
PA V A + W + F K +F +T I L C + I W+LK
Sbjct: 31 PATVAAA-DRSKWHIPIPSGKNYFSFGKILFRNTTIFLKFDGEPCD--LSLNITWYLKSA 87
Query: 97 TCHNEHSN---------LEELFQKHKLSVDEDFCHYLKNDNCWTTKNENLDCNSDSQVFP 147
C+NE N LE+L +K LS L NC P
Sbjct: 88 DCYNEIYNFKAEEVELYLEKLKEKRGLSGKYQTSSKLFQ-NCSELFKTQTFSGDFMHRLP 146
Query: 148 SLNNKELINIRNVS----NQERSMDVVARTQKDGFHIFIVSIKTENTDASWNLN------ 197
L K+ + + +M +T +D +IFIV I ++ S N
Sbjct: 147 LLGEKQEAKENGTNLTFIGDKTAMHEPLQTWQDAPYIFIVHIGISSSKESSKENSLSNLF 206
Query: 198 -VSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYWKDILRIQFWIAAVI 256
+++ + GP+ Y++ D+PLMIF+MVMCIVY+L+G+LWL WSACYW+D+LRIQFWI AVI
Sbjct: 207 TMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVI 266
Query: 257 FLGMLEKAVFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVKPRL 316
FLGMLEKAVFY+E+QNI G S QG LI AEL+SA+KR+LAR LVIIVSLGYGIVKPRL
Sbjct: 267 FLGMLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRL 326
Query: 317 GTVMHRVIGLGLLYLIFAAVEGVMRVIGGSNHLAVVLDDIILAVIDSIFVWFIFISLAQT 376
G +H+V+ G LYL+F+ +EGV+RV G LA L I LA +D+ W+IFISL QT
Sbjct: 327 GVTLHKVVVAGALYLLFSGMEGVLRVTGAQTDLA-SLAFIPLAFLDTALCWWIFISLTQT 385
Query: 377 MKTLRLRKNTVKFSLYRHFKNTLIFAVLASIVFMGWTTKTFRIAKCQSDWMERWVDDAFW 436
MK L+LR+N VK SLYRHF NTLI AV ASIVF+ WTT FRI CQSDW E WVDDA W
Sbjct: 386 MKLLKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFRIVTCQSDWRELWVDDAIW 445
Query: 437 SFLFSLILIVIMFLWRPSANNQRYAFMPLIDDSDDEIEEFMVTSENLTEGIKLRASKSVS 496
LFS+IL VIM LWRPSANNQR+AF PL ++ +++ ++ + E+ EG+K+R++K
Sbjct: 446 RLLFSMILFVIMVLWRPSANNQRFAFSPLSEEEEEDEQKEPMLKESF-EGMKMRSTKQEP 504
Query: 497 NGTAKPATSENFDEDLKWVEENIPSSFTDVALPVLVDSDEEIMTRSEMAEKM 548
NG +K ++ ++DLKWVEEN+PSS TDVALP L+DSDEE M KM
Sbjct: 505 NGNSKVNKAQ--EDDLKWVEENVPSSVTDVALPALLDSDEERMITHFERSKM 554
>gi|122937301 G protein-coupled receptor 108 isoform 1 [Homo
sapiens]
Length = 543
Score = 69.7 bits (169), Expect = 7e-12
Identities = 68/315 (21%), Positives = 139/315 (44%), Gaps = 26/315 (8%)
Query: 194 WNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYWKDILRIQFWIA 253
+++ V + P G++SA++ PL YMVM ++ GI W++ + +I + +A
Sbjct: 238 FDITVMIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMA 297
Query: 254 AVIFLGMLEKAVFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVK 313
A+ F + Y I++ G +GL + + +K L + + ++ G+ +K
Sbjct: 298 ALAFTKSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIK 357
Query: 314 PRLGTVMHRVIGLGLLYLIFAAVEGVM---RVIGGSNHLAVVLDDIILAVIDSIFVWFIF 370
L +V G+ + + A V ++ R G S++ VL IL ++D I I
Sbjct: 358 YVLSDKEKKVFGIVIPMQVLANVAYIIIESREEGASDY---VLWKEILFLVDLICCGAIL 414
Query: 371 ISLAQTMKTL--------RLRKNTVKFSLYRHFKNTLIFAVLASIVFMGWTTKTFRIA-K 421
+ +++ L ++ N K L+RH+ V+ + F ++A
Sbjct: 415 FPVVWSIRHLQDASGTDGKVAVNLAKLKLFRHY----YVMVICYVYFTRIIAILLQVAVP 470
Query: 422 CQSDWMERWVDDAFWSFLFSLILIVIMFLWRPSANNQRYAFMPLIDDSDDEIEEFMVTSE 481
Q W+ + + + F ++ + ++P+ NN Y +P D+ D ++E+ M T
Sbjct: 471 FQWQWLYQLLVEGSTLAFF----VLTGYKFQPTGNNP-YLQLPQEDEEDVQMEQVM-TDS 524
Query: 482 NLTEGIKLRASKSVS 496
EG+ + +K+ S
Sbjct: 525 GFREGLS-KVNKTAS 538
>gi|56711308 G protein-coupled receptor 107 isoform 3 [Homo sapiens]
Length = 552
Score = 68.9 bits (167), Expect = 1e-11
Identities = 68/319 (21%), Positives = 135/319 (42%), Gaps = 22/319 (6%)
Query: 193 SWNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYWKDILRIQFWI 252
+++L++ ++ P Y+SA + PL Y+ M + L G +W+ D+ +I + +
Sbjct: 239 TFSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLM 298
Query: 253 AAVIFLGMLEKAVFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIV 312
AA+ F L +Y IS+ G +G + + +K L + + ++ G+ +
Sbjct: 299 AALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFI 358
Query: 313 KPRLG----TVMHRVIGLGLL----YLIFAAVEGVMRVIGGSNHLAVVLDDIILAVIDSI 364
K L + VI L +L Y+I + E G ++D + I
Sbjct: 359 KHILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFP 418
Query: 365 FVWFIFISLAQTMKTLRLRKNTVKFSLYRHFKNTLIFAVLASIVFMGWTTKTFRIA-KCQ 423
VW I + + N K L+RH+ ++ I F ++A Q
Sbjct: 419 VVWSIRHLQEASATDGKAAINLAKLKLFRHY----YVLIVCYIYFTRIIAFLLKLAVPFQ 474
Query: 424 SDWMERWVDDAFWSFLFSLILIVIMFLWRPSANNQRYAFMPLIDDSDDEIEEFMVTSENL 483
W+ + +D+ F ++ + +RP+++N ++ L + +D E +VT+ +
Sbjct: 475 WKWLYQLLDETATLVFF----VLTGYKFRPASDN---PYLQLSQEEEDLEMESVVTTSGV 527
Query: 484 TEGIKLRASKSVSNGTAKP 502
E +K K V+NG+ +P
Sbjct: 528 MESMK--KVKKVTNGSVEP 544
>gi|130489591 G protein-coupled receptor 108 isoform 2 [Homo
sapiens]
Length = 301
Score = 68.6 bits (166), Expect = 1e-11
Identities = 67/304 (22%), Positives = 134/304 (44%), Gaps = 26/304 (8%)
Query: 205 PHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYWKDILRIQFWIAAVIFLGMLEKA 264
P G++SA++ PL YMVM ++ GI W++ + +I + +AA+ F +
Sbjct: 7 PDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFTKSISLL 66
Query: 265 VFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVKPRLGTVMHRVI 324
Y I++ G +GL + + +K L + + ++ G+ +K L +V
Sbjct: 67 FHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSDKEKKVF 126
Query: 325 GLGLLYLIFAAVEGVM---RVIGGSNHLAVVLDDIILAVIDSIFVWFIFISLAQTMKTL- 380
G+ + + A V ++ R G S++ VL IL ++D I I + +++ L
Sbjct: 127 GIVIPMQVLANVAYIIIESREEGASDY---VLWKEILFLVDLICCGAILFPVVWSIRHLQ 183
Query: 381 -------RLRKNTVKFSLYRHFKNTLIFAVLASIVFMGWTTKTFRIA-KCQSDWMERWVD 432
++ N K L+RH+ V+ + F ++A Q W+ + +
Sbjct: 184 DASGTDGKVAVNLAKLKLFRHY----YVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLV 239
Query: 433 DAFWSFLFSLILIVIMFLWRPSANNQRYAFMPLIDDSDDEIEEFMVTSENLTEGIKLRAS 492
+ F ++ + ++P+ NN Y +P D+ D ++E+ M T EG+ + +
Sbjct: 240 EGSTLAFF----VLTGYKFQPTGNNP-YLQLPQEDEEDVQMEQVM-TDSGFREGLS-KVN 292
Query: 493 KSVS 496
K+ S
Sbjct: 293 KTAS 296
>gi|211971060 G protein-coupled receptor 107 isoform 2 [Homo
sapiens]
Length = 571
Score = 63.2 bits (152), Expect = 6e-10
Identities = 71/338 (21%), Positives = 138/338 (40%), Gaps = 41/338 (12%)
Query: 193 SWNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYWKDILRIQFWI 252
+++L++ ++ P Y+SA + PL Y+ M + L G +W+ D+ +I + +
Sbjct: 239 TFSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLM 298
Query: 253 AAVIFLGMLEKAVFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIV 312
AA+ F L +Y IS+ G +G + + +K L + + ++ G+ +
Sbjct: 299 AALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFI 358
Query: 313 KPRLG----TVMHRVIGLGLL----YLIFAAVEGVMRVIGGSNHLAVVLDDIILAVIDSI 364
K L + VI L +L Y+I + E G ++D + I
Sbjct: 359 KHILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFP 418
Query: 365 FVWFI------------FISLAQTMKTLRLRK-------NTVKFSLYRHFKNTLIFAVLA 405
VW I S+ + LR N K L+RH+ ++
Sbjct: 419 VVWSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIAAINLAKLKLFRHY----YVLIVC 474
Query: 406 SIVFMGWTTKTFRIA-KCQSDWMERWVDDAFWSFLFSLILIVIMFLWRPSANNQRYAFMP 464
I F ++A Q W+ + +D+ F ++ + +RP+++N ++
Sbjct: 475 YIYFTRIIAFLLKLAVPFQWKWLYQLLDETATLVFF----VLTGYKFRPASDN---PYLQ 527
Query: 465 LIDDSDDEIEEFMVTSENLTEGIKLRASKSVSNGTAKP 502
L + +D E +VT+ + E +K K V+NG+ +P
Sbjct: 528 LSQEEEDLEMESVVTTSGVMESMK--KVKKVTNGSVEP 563
>gi|211971058 G protein-coupled receptor 107 isoform 1 [Homo
sapiens]
Length = 600
Score = 52.4 bits (124), Expect = 1e-06
Identities = 27/121 (22%), Positives = 57/121 (47%)
Query: 193 SWNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYWKDILRIQFWI 252
+++L++ ++ P Y+SA + PL Y+ M + L G +W+ D+ +I + +
Sbjct: 239 TFSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLM 298
Query: 253 AAVIFLGMLEKAVFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIV 312
AA+ F L +Y IS+ G +G + + +K L + + ++ G+ +
Sbjct: 299 AALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFI 358
Query: 313 K 313
K
Sbjct: 359 K 359
>gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens]
Length = 1162
Score = 31.2 bits (69), Expect = 2.6
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 49 WLETVNDKSGPLIFRKTMFNSTDIKLSVKSFHCSG----------PVKFTIVWHL--KYH 96
W+ V + L+F +S +I + +K ++ P + + W++ +Y
Sbjct: 282 WIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYVLERYV 341
Query: 97 TCHNEHSNLEELFQKHKLSVD 117
C S+L + FQK LS+D
Sbjct: 342 YCITNRSHLTKEFQKESLSMD 362
>gi|46240864 sperm associated antigen 17 [Homo sapiens]
Length = 2223
Score = 30.4 bits (67), Expect = 4.4
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 467 DDSDDEIEEFMVTSENLTEGIKLRASKSVSNGTAKPATSENFDEDLKWVEENIPSSFTDV 526
D + +F S L GI L S SNG A E+ D DL+ + NIPS+ T
Sbjct: 1110 DAKNKAFSKFGSFSATLENGICLSISYYGSNGMAP----EDKDPDLETIL-NIPSALTPT 1164
Query: 527 ALPVLV 532
+PV+V
Sbjct: 1165 VVPVIV 1170
>gi|4759128 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 1 [Homo sapiens]
Length = 1099
Score = 30.0 bits (66), Expect = 5.8
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 18/165 (10%)
Query: 213 DWP-----LMIFYMVMCIVYILYGILWLTWSACYWKDILR--IQFWIAAVIFLGMLEKAV 265
DWP I+ ++ IV+ L WLT ++ + + ++ +++++ M +
Sbjct: 900 DWPETRQKQAIYLFLLPIVFPL----WLTVPDVRRQESRKFFVFTFLGSIMWIAMFSYLM 955
Query: 266 FYSEYQNISNTGLSTQ--GLLIFAELISAIKRTLARLLVIIVSLGYGIVKPRLGT-VMHR 322
+ +Q G+S + GL I A S I + ++V LG V +G+ +
Sbjct: 956 VWWAHQVGETIGISEEIMGLTILAAGTS-IPDLITSVIVARKGLGDMAVSSSVGSNIFDI 1014
Query: 323 VIGLGLLYLIFAAVEGVMRVIGGSNHL---AVVLDDIILAVIDSI 364
+GL + +L+F+ + G+ V SN L V+L ++L VI SI
Sbjct: 1015 TVGLPVPWLLFSLINGLQPVPVSSNGLFCAIVLLFLMLLFVISSI 1059
>gi|160333222 transmembrane protein 87A isoform 2 [Homo sapiens]
Length = 181
Score = 30.0 bits (66), Expect = 5.8
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 37 PAAVRAVPELGLWLETVNDKSGPLIFRKTMFNSTDIKLSVKSFHCSGPVKFTIVWHLKYH 96
PA V A + W + F K +F +T I L C + I W+LK
Sbjct: 31 PATVAAA-DRSKWHIPIPSGKNYFSFGKILFRNTTIFLKFDGEPCD--LSLNITWYLKSA 87
Query: 97 TCHNEHSN---------LEELFQKHKLS 115
C+NE N LE+L +K LS
Sbjct: 88 DCYNEIYNFKAEEVELYLEKLKEKRGLS 115
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 29.3 bits (64), Expect = 9.9
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 99 HNEHSNLEELFQKHKLSVDEDFCHYLKNDNCWTTKNENLDCNSDSQVFPSLNNKELINIR 158
+ + NL+E+ Q+HKL ++ K N K + S+ FP + E +
Sbjct: 656 YKKRQNLDEILQQHKLKME-------KERNARRKKKKAPAAASEEAAFPPVVEDEEMEAS 708
Query: 159 NVSNQERSM 167
VS E M
Sbjct: 709 GVSGNEEEM 717
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 29.3 bits (64), Expect = 9.9
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 99 HNEHSNLEELFQKHKLSVDEDFCHYLKNDNCWTTKNENLDCNSDSQVFPSLNNKELINIR 158
+ + NL+E+ Q+HKL ++ K N K + S+ FP + E +
Sbjct: 656 YKKRQNLDEILQQHKLKME-------KERNARRKKKKAPAAASEEAAFPPVVEDEEMEAS 708
Query: 159 NVSNQERSM 167
VS E M
Sbjct: 709 GVSGNEEEM 717
>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
sapiens]
Length = 2113
Score = 29.3 bits (64), Expect = 9.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 101 EHSNLEELFQKHKLSVDEDFCHYLKNDNCWTTKNENLD 138
EH+ LEE Q K + E F +D T NEN D
Sbjct: 1876 EHAKLEEQLQHAKFEITECFISDSSSDQMTTGTNENAD 1913
>gi|122937412 ubiquitin specific peptidase 45 [Homo sapiens]
Length = 814
Score = 29.3 bits (64), Expect = 9.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 133 KNENLDCNSDSQVFPSLNNKE 153
KNENL+ N DS +F SL N E
Sbjct: 459 KNENLEMNGDSLMFASLMNSE 479
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,122,011
Number of Sequences: 37866
Number of extensions: 800196
Number of successful extensions: 2738
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2718
Number of HSP's gapped (non-prelim): 22
length of query: 555
length of database: 18,247,518
effective HSP length: 107
effective length of query: 448
effective length of database: 14,195,856
effective search space: 6359743488
effective search space used: 6359743488
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.