Guide to the Human Genome
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Name: TMEM87B Sequence: fasta or formatted (555aa) NCBI GI: 14249524
Description:

transmembrane protein 87B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         35           2
 C cysteine            2.2         12           1
 D aspartate           4.9         27           2
 E glutamate           5.2         29           2
 F phenylalanine       5.9         33           1
 G glycine             4.0         22           2
 H histidine           2.2         12           1
 I isoleucine          8.3         46           2
 K lysine              5.2         29           1
 L leucine            11.0         61           2
 M methionine          3.6         20           1
 N asparagine          5.0         28           2
 P proline             2.9         16           1
 Q glutamine           1.8         10           1
 R arginine            4.9         27           4
 S serine              8.3         46           2
 T threonine           5.2         29           2
 V valine              7.7         43           2
 W tryptophan          3.1         17           1
 Y tyrosine            2.3         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 87B 
TMEM87A               0.385   transmembrane protein 87A isoform 1 
GPR108                0.041   G protein-coupled receptor 108 isoform 1 
GPR107                0.040   G protein-coupled receptor 107 isoform 3 
GPR108                0.040   G protein-coupled receptor 108 isoform 2 
GPR107                0.035   G protein-coupled receptor 107 isoform 2 
GPR107                0.025   G protein-coupled receptor 107 isoform 1 
KDM2A                 0.005   F-box and leucine-rich repeat protein 11 
SPAG17                0.005   sperm associated antigen 17 
SLC24A1               0.005   solute carrier family 24 (sodium/potassium/calcium ex...
TMEM87A               0.005   transmembrane protein 87A isoform 2 
NCOR2                 0.004   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.004   nuclear receptor co-repressor 2 isoform 1 
DSCAML1               0.004   Down syndrome cell adhesion molecule like 1 
USP45                 0.004   ubiquitin specific peptidase 45 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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