Guide to the Human Genome
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Name: KDM2A Sequence: fasta or formatted (1162aa) NCBI GI: 16306580
Description:

F-box and leucine-rich repeat protein 11

Referenced in:

Cullins and SCF Complexes
Histones, Related Proteins, and Modifying Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         48           3
 C cysteine            3.7         43           2
 D aspartate           6.1         71           2
 E glutamate           7.7         90          11
 F phenylalanine       2.3         27           1
 G glycine             5.9         68           2
 H histidine           2.5         29           2
 I isoleucine          4.4         51           2
 K lysine              6.1         71           2
 L leucine            10.3        120           3
 M methionine          2.7         31           1
 N asparagine          3.5         41           2
 P proline             5.7         66           3
 Q glutamine           3.9         45           1
 R arginine            8.0         93           4
 S serine              7.4         86           3
 T threonine           5.6         65           1
 V valine              5.7         66           1
 W tryptophan          1.8         21           1
 Y tyrosine            2.6         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   F-box and leucine-rich repeat protein 11 
KDM2B                 0.459   F-box and leucine-rich repeat protein 10 isoform b [...
KDM2B                 0.336   F-box and leucine-rich repeat protein 10 isoform a [...
FBXL19                0.113   F-box and leucine-rich repeat protein 19 
PHF8                  0.109   PHD finger protein 8 
JHDM1D                0.101   jumonji C domain containing histone demethylase 1 ho...
PHF2                  0.089   PHD finger protein 2 
FBXL20                0.017   F-box and leucine-rich repeat protein 20 
FBXL7                 0.017   F-box and leucine-rich repeat protein 7 
CXXC1                 0.015   CXXC finger 1 (PHD domain) isoform 1 
CXXC1                 0.015   CXXC finger 1 (PHD domain) isoform 2 
DNMT1                 0.015   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...
DNMT1                 0.015   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
FBXL2                 0.013   F-box and leucine-rich repeat protein 2 
MLL                   0.013   myeloid/lymphoid or mixed-lineage leukemia protein [...
FBXL14                0.012   F-box and leucine-rich repeat protein 14 
FBXL13                0.012   F-box and leucine-rich repeat protein 13 isoform 2 ...
FBXL13                0.012   F-box and leucine-rich repeat protein 13 isoform 1 ...
MLL4                  0.012   myeloid/lymphoid or mixed-lineage leukemia 4 
SKP2                  0.012   S-phase kinase-associated protein 2 isoform 1 
SKP2                  0.011   S-phase kinase-associated protein 2 isoform 2 
MBD1                  0.011   methyl-CpG binding domain protein 1 isoform PCM1 [Ho...
MBD1                  0.011   methyl-CpG binding domain protein 1 isoform 1 
FBXL16                0.011   F-box and leucine-rich repeat protein 16 
MBD1                  0.011   methyl-CpG binding domain protein 1 isoform 2 
LRRC29                0.008   F-box and leucine-rich repeat protein 9 
LRRC29                0.008   F-box and leucine-rich repeat protein 9 
PHF23                 0.008   PHD finger protein 23 
MYST3                 0.007   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.007   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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