Guide to the Human Genome
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Name: RBM12 Sequence: fasta or formatted (932aa) NCBI GI: 19923345
Description:

RNA binding motif protein 12

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt mRNA [932aa] RNA binding motif protein 12
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         59           2
 C cysteine            0.4          4           1
 D aspartate           3.4         32           2
 E glutamate           4.0         37           2
 F phenylalanine       4.7         44           2
 G glycine            12.8        119           3
 H histidine           2.1         20           1
 I isoleucine          4.7         44           1
 K lysine              4.2         39           2
 L leucine             7.1         66           3
 M methionine          3.9         36           2
 N asparagine          6.1         57           3
 P proline            13.9        130           4
 Q glutamine           2.6         24           1
 R arginine            3.8         35           3
 S serine              7.5         70           3
 T threonine           4.2         39           2
 V valine              7.0         65           2
 W tryptophan          0.1          1           1
 Y tyrosine            1.2         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 12 
RBM12                 1.000   RNA binding motif protein 12 
RBM12B                0.092   RNA binding motif protein 12B 
COL4A5                0.040   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.040   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.040   type IV collagen alpha 5 isoform 3 precursor 
ELN                   0.037   elastin isoform e precursor 
ELN                   0.037   elastin isoform c precursor 
ELN                   0.037   elastin isoform b precursor 
COL4A1                0.037   alpha 1 type IV collagen preproprotein 
COL2A1                0.036   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.036   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL8A1                0.035   alpha 1 type VIII collagen precursor 
COL8A1                0.035   alpha 1 type VIII collagen precursor 
COL3A1                0.035   collagen type III alpha 1 preproprotein 
HNRNPF                0.034   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.034   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.034   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.034   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.034   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.034   heterogeneous nuclear ribonucleoprotein F 
COL1A1                0.034   alpha 1 type I collagen preproprotein 
ELN                   0.034   elastin isoform d precursor 
ELN                   0.034   elastin isoform a precursor 
COL8A2                0.034   collagen, type VIII, alpha 2 
COL10A1               0.033   type X collagen alpha 1 precursor 
COL16A1               0.033   alpha 1 type XVI collagen precursor 
ESX1                  0.032   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
HNRNPH2               0.030   heterogeneous nuclear ribonucleoprotein H2 
HNRNPH2               0.030   heterogeneous nuclear ribonucleoprotein H2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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