Guide to the Human Genome
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Name: NT5C1A Sequence: fasta or formatted (368aa) NCBI GI: 14210538
Description:

5'-nucleotidase, cytosolic IA

Referenced in:

Nucleotide Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         43           3
 C cysteine            0.8          3           1
 D aspartate           4.3         16           2
 E glutamate           9.0         33           2
 F phenylalanine       5.2         19           2
 G glycine             6.0         22           2
 H histidine           2.7         10           1
 I isoleucine          4.1         15           1
 K lysine              5.4         20           3
 L leucine             8.2         30           2
 M methionine          1.6          6           1
 N asparagine          3.0         11           2
 P proline             7.6         28           1
 Q glutamine           4.6         17           2
 R arginine            6.5         24           2
 S serine              5.4         20           2
 T threonine           3.8         14           1
 V valine              6.2         23           3
 W tryptophan          0.5          2           1
 Y tyrosine            3.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   5'-nucleotidase, cytosolic IA 
NT5C1B                0.593   5' nucleotidase, cytosolic IB isoform 1 
NT5C1B                0.593   5' nucleotidase, cytosolic IB isoform 2 
TTN                   0.010   titin isoform N2-A 
SMARCC2               0.010   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.010   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.010   SWI/SNF-related matrix-associated actin-dependent r...
SYN2                  0.008   synapsin II isoform IIa 
SYN2                  0.008   synapsin II isoform IIb 
CCDC96                0.008   coiled-coil domain containing 96 
ZFPM1                 0.007   zinc finger protein, multitype 1 
FADS6                 0.007   fatty acid desaturase domain family, member 6 [Homo...
RAX                   0.007   retina and anterior neural fold homeobox 
CHD7                  0.007   chromodomain helicase DNA binding protein 7 
FAM21C                0.007   hypothetical protein LOC253725 
KLRG2                 0.007   killer cell lectin-like receptor subfamily G, member...
CDC40                 0.006   cell division cycle 40 homolog 
PCDH1                 0.006   protocadherin 1 isoform 2 precursor 
MFAP1                 0.006   microfibrillar-associated protein 1 
GDF5                  0.006   growth differentiation factor 5 preproprotein 
TESK1                 0.006   testis-specific protein kinase 1 
SFI1                  0.006   spindle assembly associated Sfi1 homolog isoform a [...
SFI1                  0.006   spindle assembly associated Sfi1 homolog isoform b [...
BAI1                  0.006   brain-specific angiogenesis inhibitor 1 precursor [...
PALMD                 0.006   palmdelphin 
MXRA7                 0.006   transmembrane anchor protein 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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