CHM 37821

Name: CHM	Sequence: fasta or formatted (653aa)		NCBI GI: 9966761
Description: choroideremia isoform a		Referenced in: Prenylation and Related Modifications Rab
Other entries for this name: alt prot [110aa] choroideremia isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.7 37 3 C cysteine 3.5 23 1 D aspartate 5.7 37 2 E glutamate 9.8 64 2 F phenylalanine 4.0 26 1 G glycine 4.3 28 2 H histidine 1.5 10 1 I isoleucine 5.8 38 2 K lysine 4.7 31 2 L leucine 8.4 55 2 M methionine 2.5 16 1 N asparagine 4.4 29 1 P proline 4.6 30 4 Q glutamine 4.1 27 2 R arginine 4.4 29 2 S serine 10.0 65 2 T threonine 6.1 40 2 V valine 6.1 40 2 W tryptophan 0.6 4 1 Y tyrosine 3.7 24 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 choroideremia isoform a CHML 0.712 choroideremia-like Rab escort protein 2 CHM 0.146 choroideremia isoform b GDI1 0.066 GDP dissociation inhibitor 1 GDI2 0.066 GDP dissociation inhibitor 2 isoform 1 GDI2 0.034 GDP dissociation inhibitor 2 isoform 2 RETSAT 0.010 all-trans-13,14-dihydroretinol saturase WWP1 0.006 WW domain containing E3 ubiquitin protein ligase 1 [... EDEM3 0.005 ER degradation enhancer, mannosidase alpha-like 3 [... RANBP3 0.005 RAN binding protein 3 isoform RANBP3-b RANBP3 0.005 RAN binding protein 3 isoform RANBP3-a RANBP3 0.005 RAN binding protein 3 isoform RANBP3-d TULP3 0.005 tubby like protein 3 isoform 2 TULP3 0.005 tubby like protein 3 isoform 1 NFIL3 0.005 nuclear factor, interleukin 3 regulated ARHGEF12 0.005 Rho guanine nucleotide exchange factor (GEF) 12 [Homo... DSPP 0.004 dentin sialophosphoprotein preproprotein KIAA1731 0.004 hypothetical protein LOC85459 RTN3 0.004 reticulon 3 isoform b LOC392555 0.004 PREDICTED: similar to melanoma antigen family C, 2 ... LOC100293706 0.004 PREDICTED: similar to hCG1797215 LOC392555 0.004 PREDICTED: similar to melanoma antigen family C, 2 ... LOC100287210 0.004 PREDICTED: similar to hCG1797215 LOC392555 0.004 PREDICTED: similar to melanoma antigen family C, 2 ... LOC100287210 0.004 PREDICTED: hypothetical protein XP_002342849 LOC100287210 0.004 PREDICTED: similar to hCG1797215 IWS1 0.004 IWS1 homolog TSPYL2 0.004 TSPY-like 2 EPB41 0.004 erythrocyte membrane protein band 4.1 (elliptocytosis... SLC39A10 0.004 solute carrier family 39 (zinc transporter), member... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.