Guide to the Human Genome
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Name: C17orf48 Sequence: fasta or formatted (342aa) NCBI GI: 94158594
Description:

ADP-ribose/CDP-alcohol pyrophosphatase

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         16           1
 C cysteine            2.0          7           2
 D aspartate           7.0         24           2
 E glutamate           6.7         23           1
 F phenylalanine       6.4         22           2
 G glycine             5.6         19           2
 H histidine           5.0         17           2
 I isoleucine          3.5         12           2
 K lysine              4.4         15           2
 L leucine             8.5         29           2
 M methionine          2.6          9           2
 N asparagine          5.8         20           2
 P proline             5.3         18           1
 Q glutamine           4.4         15           1
 R arginine            4.1         14           3
 S serine              7.0         24           2
 T threonine           3.2         11           1
 V valine              7.3         25           2
 W tryptophan          1.5          5           1
 Y tyrosine            5.0         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ADP-ribose/CDP-alcohol pyrophosphatase 
SMPDL3A               0.021   acid sphingomyelinase-like phosphodiesterase 3A [Hom...
LOC100292811          0.007   PREDICTED: similar to proprotein convertase subtili...
LOC100290671          0.007   PREDICTED: hypothetical protein XP_002347099 
LOC100289618          0.007   PREDICTED: hypothetical protein XP_002342982 
SESTD1                0.007   SEC14 and spectrin domains 1 
TBPL2                 0.007   TATA box binding protein like 2 
SMPD1                 0.006   sphingomyelin phosphodiesterase 1, acid lysosomal is...
RNF213                0.006   ring finger protein 213 
SMPDL3B               0.004   acid sphingomyelinase-like phosphodiesterase 3B isof...
SMPDL3B               0.004   acid sphingomyelinase-like phosphodiesterase 3B isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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