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Search of human proteins with 93587332
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|93587332 voltage-gated sodium channel beta-3 subunit
precursor [Homo sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9055238 voltage-gated sodium channel beta-3 subunit precursor... 437 e-123
gi|93587332 voltage-gated sodium channel beta-3 subunit precurso... 437 e-123
gi|4506805 sodium channel, voltage-gated, type I, beta isoform a... 182 2e-46
gi|39930610 sodium channel, voltage-gated, type I, beta isoform ... 101 4e-22
gi|4505243 myelin protein zero [Homo sapiens] 62 5e-10
gi|38093645 myelin protein zero-like 3 [Homo sapiens] 62 5e-10
gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens] 53 2e-07
gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens] 53 2e-07
gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens] 47 1e-05
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens] 47 1e-05
gi|148664224 adhesion molecule, interacts with CXADR antigen 1 i... 40 0.001
gi|148664207 adhesion molecule, interacts with CXADR antigen 1 i... 40 0.001
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa... 40 0.001
gi|62865876 immunoglobulin superfamily, member 11 isoform b [Hom... 40 0.001
gi|62865874 immunoglobulin superfamily, member 11 isoform a [Hom... 37 0.013
gi|21687218 CD300 molecule-like family member g [Homo sapiens] 35 0.037
gi|32699028 V-set and immunoglobulin domain containing 1 [Homo s... 35 0.063
gi|49574534 T cell immunoglobulin mucin 3 [Homo sapiens] 34 0.082
gi|5901964 HERV-H LTR-associating 2 [Homo sapiens] 34 0.082
gi|5453613 CD7 antigen precursor [Homo sapiens] 34 0.11
gi|11386199 poliovirus receptor-related 3 [Homo sapiens] 34 0.11
gi|7706529 CD244 natural killer cell receptor 2B4 [Homo sapiens] 33 0.14
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho... 33 0.14
gi|229577039 butyrophilin-like 8 isoform 4 precursor [Homo sapiens] 33 0.14
gi|94957742 butyrophilin-like 8 isoform 2 precursor [Homo sapiens] 33 0.14
gi|13376271 butyrophilin-like 8 isoform 1 precursor [Homo sapiens] 33 0.14
gi|14150145 matrix-remodelling associated 8 [Homo sapiens] 33 0.14
gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo sapi... 33 0.18
gi|209413732 poliovirus receptor isoform delta [Homo sapiens] 33 0.18
gi|209413730 poliovirus receptor isoform gamma [Homo sapiens] 33 0.18
>gi|9055238 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 437 bits (1124), Expect = e-123
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVV 60
MPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVV
Sbjct: 1 MPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVV 60
Query: 61 EWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTC 120
EWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTC
Sbjct: 61 EWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTC 120
Query: 121 NVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYC 180
NVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYC
Sbjct: 121 NVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYC 180
Query: 181 YRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE 215
YRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE
Sbjct: 181 YRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE 215
>gi|93587332 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 437 bits (1124), Expect = e-123
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVV 60
MPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVV
Sbjct: 1 MPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVV 60
Query: 61 EWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTC 120
EWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTC
Sbjct: 61 EWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTC 120
Query: 121 NVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYC 180
NVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYC
Sbjct: 121 NVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYC 180
Query: 181 YRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE 215
YRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE
Sbjct: 181 YRKVSKAEEAAQENASDYLAIPSENKENSAVPVEE 215
>gi|4506805 sodium channel, voltage-gated, type I, beta isoform a
[Homo sapiens]
Length = 218
Score = 182 bits (462), Expect = 2e-46
Identities = 103/206 (50%), Positives = 133/206 (64%), Gaps = 7/206 (3%)
Query: 10 LASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGG 69
LA +V VS CVEV SETEAV G K+ CISC +R E A T EW +R +G
Sbjct: 5 LALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGT 64
Query: 70 KDFL-IYEYRNGHQEVESP--FQGRLQWNGS---KDLQDVSITVLNVTLNDSGLYTCNVS 123
++F+ I Y N ++E F+GR+ WNGS KDLQD+SI + NVT N SG Y C+V
Sbjct: 65 EEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVY 124
Query: 124 REFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRK 183
R FE + + I + V ++A D S+VSEIMMY+L+V LT+WL+ EMIYCY+K
Sbjct: 125 RLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMIYCYKK 184
Query: 184 VSKA-EEAAQENASDYLAIPSENKEN 208
++ A E AAQENAS+YLAI SE+KEN
Sbjct: 185 IAAATETAAQENASEYLAITSESKEN 210
>gi|39930610 sodium channel, voltage-gated, type I, beta isoform b
[Homo sapiens]
Length = 268
Score = 101 bits (252), Expect = 4e-22
Identities = 62/145 (42%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
Query: 10 LASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGG 69
LA +V VS CVEV SETEAV G K+ CISC +R E A T EW +R +G
Sbjct: 5 LALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGT 64
Query: 70 KDFL-IYEYRNGHQEVESP--FQGRLQWNGS---KDLQDVSITVLNVTLNDSGLYTCNVS 123
++F+ I Y N ++E F+GR+ WNGS KDLQD+SI + NVT N SG Y C+V
Sbjct: 65 EEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVY 124
Query: 124 REFEFEAHRPFVKTTRLIPLRVTEE 148
R FE + + I + V ++
Sbjct: 125 RLLFFENYEHNTSVVKKIHIEVVDK 149
>gi|4505243 myelin protein zero [Homo sapiens]
Length = 258
Score = 61.6 bits (148), Expect = 5e-10
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 11/161 (6%)
Query: 25 VCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFL-IYEYRNGHQE 83
+ V E G+ + L C S E V W Y+PEGG+D + I+ Y G
Sbjct: 40 IVVYTDREVHGAVGSRVTLHC-SFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPY 98
Query: 84 VES--PFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLI 141
++ F+ R+QW G +D SI + N+ +D+G +TC+V + V T +
Sbjct: 99 IDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPD------IVGKTSQV 152
Query: 142 PLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMI-YCY 181
L V E+ + V+ ++ +L V L L LL ++ YC+
Sbjct: 153 TLYVFEKVPTRYGVVLGAVIGGVLGVVLLLLLLFYVVRYCW 193
>gi|38093645 myelin protein zero-like 3 [Homo sapiens]
Length = 235
Score = 61.6 bits (148), Expect = 5e-10
Identities = 48/211 (22%), Positives = 94/211 (44%), Gaps = 13/211 (6%)
Query: 7 LFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRP 66
LFPL ++ V + F + + + G +KL+C + +V ++W YRP
Sbjct: 14 LFPLLGVLFFQGVYIVFSLEIRADAHVRGYVGEKIKLKC-TFKSTSDVTDKLTIDWTYRP 72
Query: 67 EGGKDFL-IYEYRN-GHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSR 124
+ I+ Y++ + F+ R+ W G+ D SI++ N T+ D+G ++C V
Sbjct: 73 PSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKN 132
Query: 125 EFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKV 184
+ + P + T VTE F +++S + + +LVF+ +++ ++ R
Sbjct: 133 PPDVHHNIPMTELT------VTERG---FGTMLSSVALLSILVFVPSAVVVALL-LVRMG 182
Query: 185 SKAEEAAQENASDYLAIPSENKENSAVPVEE 215
KA + + S Y E +++ EE
Sbjct: 183 RKAAGLKKRSRSGYKKSSIEVSDDTDQEEEE 213
>gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 53.1 bits (126), Expect = 2e-07
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 34 EAVQGNPMKLRCISCMKREEVEATTVVEWFYRP-EGGKD-FLIYEYRNGHQEVESPFQGR 91
EAV G +L+C +A TV W +RP +GG + F+ Y + + Q + F+ R
Sbjct: 36 EAVNGTDARLKCTFSSFAPVGDALTVT-WNFRPLDGGPEQFVFYYHIDPFQPMSGRFKDR 94
Query: 92 LQWNGSKDLQDVSITVLNVTLNDSGLYTCNV 122
+ W+G+ + D SI + + +D+G YTC V
Sbjct: 95 VSWDGNPERYDASILLWKLQFDDNGTYTCQV 125
>gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 53.1 bits (126), Expect = 2e-07
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 34 EAVQGNPMKLRCISCMKREEVEATTVVEWFYRP-EGGKD-FLIYEYRNGHQEVESPFQGR 91
EAV G +L+C +A TV W +RP +GG + F+ Y + + Q + F+ R
Sbjct: 36 EAVNGTDARLKCTFSSFAPVGDALTVT-WNFRPLDGGPEQFVFYYHIDPFQPMSGRFKDR 94
Query: 92 LQWNGSKDLQDVSITVLNVTLNDSGLYTCNV 122
+ W+G+ + D SI + + +D+G YTC V
Sbjct: 95 VSWDGNPERYDASILLWKLQFDDNGTYTCQV 125
>gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]
Length = 209
Score = 47.0 bits (110), Expect = 1e-05
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 27 VEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFL-IYEYRNGHQEVE 85
V P E G KL C T V W ++PEG + + Y G +
Sbjct: 40 VYTPKEIFVANGTQGKLTC-KFKSTSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLG 98
Query: 86 S--PFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNV 122
+ PF+ R+ W G D +D SI + N+ +G Y C+V
Sbjct: 99 NYPPFKDRISWAGDLDKKDASINIENMQFIHNGTYICDV 137
>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
Length = 269
Score = 47.0 bits (110), Expect = 1e-05
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 27 VEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFL-IYEYRNGHQEVE 85
V P E G KL C T V W ++PEG + + Y G +
Sbjct: 40 VYTPKEIFVANGTQGKLTC-KFKSTSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLG 98
Query: 86 S--PFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNV 122
+ PF+ R+ W G D +D SI + N+ +G Y C+V
Sbjct: 99 NYPPFKDRISWAGDLDKKDASINIENMQFIHNGTYICDV 137
>gi|148664224 adhesion molecule, interacts with CXADR antigen 1
isoform 2 [Homo sapiens]
Length = 384
Score = 40.4 bits (93), Expect = 0.001
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 16 IYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIY 75
++ +V V E P E G +++ C+ + EV+ T VEW + K+ +++
Sbjct: 116 VFKKAVVLHVLPEEPKELMVHVGGLIQMGCV--FQSTEVKHVTKVEWIFSGRRAKEEIVF 173
Query: 76 EYRNG------HQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNV 122
Y + + + FQ R+ G D SI + V +D G YTC++
Sbjct: 174 RYYHKLRMSVEYSQSWGHFQNRVNLVGDIFRNDGSIMLQGVRESDGGNYTCSI 226
Score = 29.3 bits (64), Expect = 2.6
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 30 PSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRP-EGGKD-FLIYEYRNGHQEVESP 87
P E G+ + C+ + E + ++W P E KD +++Y Y N +
Sbjct: 17 PPELTVHVGDSALMGCV--FQSTEDKCIFKIDWTLSPGEHAKDEYVLYYYSNLSVPI-GR 73
Query: 88 FQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFV 135
FQ R+ G D S+ + +V D G Y C + + E + + V
Sbjct: 74 FQNRVHLMGDILCNDGSLLLQDVQEADQGTYICEIRLKGESQVFKKAV 121
>gi|148664207 adhesion molecule, interacts with CXADR antigen 1
isoform 1 [Homo sapiens]
Length = 394
Score = 40.4 bits (93), Expect = 0.001
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 16 IYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIY 75
++ +V V E P E G +++ C+ + EV+ T VEW + K+ +++
Sbjct: 126 VFKKAVVLHVLPEEPKELMVHVGGLIQMGCV--FQSTEVKHVTKVEWIFSGRRAKEEIVF 183
Query: 76 EYRNG------HQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNV 122
Y + + + FQ R+ G D SI + V +D G YTC++
Sbjct: 184 RYYHKLRMSVEYSQSWGHFQNRVNLVGDIFRNDGSIMLQGVRESDGGNYTCSI 236
Score = 29.3 bits (64), Expect = 2.6
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 30 PSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRP-EGGKD-FLIYEYRNGHQEVESP 87
P E G+ + C+ + E + ++W P E KD +++Y Y N +
Sbjct: 27 PPELTVHVGDSALMGCV--FQSTEDKCIFKIDWTLSPGEHAKDEYVLYYYSNLSVPI-GR 83
Query: 88 FQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFV 135
FQ R+ G D S+ + +V D G Y C + + E + + V
Sbjct: 84 FQNRVHLMGDILCNDGSLLLQDVQEADQGTYICEIRLKGESQVFKKAV 131
>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
Length = 215
Score = 40.0 bits (92), Expect = 0.001
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 27 VEVPSETEAVQGNPMKLRCI--SCMKREEVEATTVVEWFYRPEGG---KDFLIYEYRNGH 81
V VP+ + G+ +L C SC + + + W Y+ + FL + + +
Sbjct: 32 VTVPATLNVLNGSDARLPCTFNSCYTVNHKQFS--LNWTYQECNNCSEEMFLQFRMKIIN 89
Query: 82 QEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLI 141
++E FQ R++++G+ DVS+ + NV D G+Y C + + HR K I
Sbjct: 90 LKLER-FQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMN--PPDRHRGHGK----I 142
Query: 142 PLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIY-CYRKVSKAEEAAQENASDYLA 200
L+V E + S V+ I+ + FL + +L+ M+ C R+ + Q+ ++D L
Sbjct: 143 HLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRR-----KKEQKLSTDDLK 197
Query: 201 IPSENK 206
E K
Sbjct: 198 TEEEGK 203
>gi|62865876 immunoglobulin superfamily, member 11 isoform b [Homo
sapiens]
Length = 431
Score = 40.0 bits (92), Expect = 0.001
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 9 PLASLVLIYWVSVCFPVCV-EVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRP- 66
PLA L+L+ V + V E P + +G P L C + + W P
Sbjct: 7 PLAPLLLLSLHGVAASLEVSESPGSIQVARGQPAVLPCTFTTSAALINLNVI--WMVTPL 64
Query: 67 -EGGKDFLIYEYRNGHQEVESP-FQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVS 123
+ + Y+ G +P F GR+ + G+ +VSI + N L+D+G Y C V+
Sbjct: 65 SNANQPEQVILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFINNTQLSDTGTYQCLVN 123
Score = 31.2 bits (69), Expect = 0.70
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 91 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG 150
+L ++D ++T+ N++ SGLY C S +T L+ L+V
Sbjct: 186 KLPPTATQDQVQGTVTIRNISALSSGLYQCVASNAIG--------TSTCLLDLQVISPQP 237
Query: 151 EDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSA 210
+ + I +++ + L++ + +R +K EE + IP+E +E+
Sbjct: 238 RNIGLIAGAIGTGAVIIIFCIALILGAFFYWRSKNKEEEEEE--------IPNEIREDDL 289
Query: 211 VP 212
P
Sbjct: 290 PP 291
>gi|62865874 immunoglobulin superfamily, member 11 isoform a [Homo
sapiens]
Length = 430
Score = 37.0 bits (84), Expect = 0.013
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 28 EVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRP--EGGKDFLIYEYRNGHQEVE 85
E P + +G P L C + + W P + + Y+ G
Sbjct: 26 ESPGSIQVARGQPAVLPCTFTTSAALINLNVI--WMVTPLSNANQPEQVILYQGGQMFDG 83
Query: 86 SP-FQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVS 123
+P F GR+ + G+ +VSI + N L+D+G Y C V+
Sbjct: 84 APRFHGRVGFTGTMPATNVSIFINNTQLSDTGTYQCLVN 122
Score = 31.2 bits (69), Expect = 0.70
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 91 RLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG 150
+L ++D ++T+ N++ SGLY C S +T L+ L+V
Sbjct: 185 KLPPTATQDQVQGTVTIRNISALSSGLYQCVASNAIG--------TSTCLLDLQVISPQP 236
Query: 151 EDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSA 210
+ + I +++ + L++ + +R +K EE + IP+E +E+
Sbjct: 237 RNIGLIAGAIGTGAVIIIFCIALILGAFFYWRSKNKEEEEEE--------IPNEIREDDL 288
Query: 211 VP 212
P
Sbjct: 289 PP 290
>gi|21687218 CD300 molecule-like family member g [Homo sapiens]
Length = 332
Score = 35.4 bits (80), Expect = 0.037
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 13 LVLIYWVSVCFP--VCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGK 70
L+++ W + P +E P E +G+ + L+C REE+ ++ +GG
Sbjct: 3 LLVLLWGCLLLPGYEALEGPEEISGFEGDTVSLQCTY---REELRDHRK---YWCRKGG- 55
Query: 71 DFLIYEYRNG----HQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSR 124
+++ +G +E + +GR+ S+ + +T+ N+TL D+G Y C V +
Sbjct: 56 --ILFSRCSGTIYAEEEGQETMKGRVSIRDSRQELSLIVTLWNLTLQDAGEYWCGVEK 111
>gi|32699028 V-set and immunoglobulin domain containing 1 [Homo
sapiens]
Length = 387
Score = 34.7 bits (78), Expect = 0.063
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 38 GNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGS 97
G+ + L CI E ++ F+ + + IY + G F+ R+ GS
Sbjct: 36 GSNVTLICIYTTTVASREQLSIQWSFFHKKEMEPISIYFSQGGQAVAIGQFKDRI--TGS 93
Query: 98 KDLQDVSITVLNVTLNDSGLYTCNVSREFEF 128
D + SIT+ ++ DSG+Y C+V+ +F
Sbjct: 94 NDPGNASITISHMQPADSGIYICDVNNPPDF 124
>gi|49574534 T cell immunoglobulin mucin 3 [Homo sapiens]
Length = 301
Score = 34.3 bits (77), Expect = 0.082
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 95 NGSKDLQDVSITVLNVTLNDSGLYTCNV 122
NG DVS+T+ NVTL DSG+Y C +
Sbjct: 85 NGDFRKGDVSLTIENVTLADSGIYCCRI 112
>gi|5901964 HERV-H LTR-associating 2 [Homo sapiens]
Length = 414
Score = 34.3 bits (77), Expect = 0.082
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 60 VEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDL---QDVSITVLNVTLNDSG 116
V W G L Y + + + + R WN K+L D S+ ++++ L+DSG
Sbjct: 258 VTWSRMKSGTFSVLAYYLSSSQNTIIN--ESRFSWN--KELINQSDFSMNLMDLNLSDSG 313
Query: 117 LYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLW 172
Y CN+S + E + T + P + T + +V IL FL +W
Sbjct: 314 EYLCNISSD---EYTLLTIHTVHVEPSQETASHNKGLWILVPSA---ILAAFLLIW 363
>gi|5453613 CD7 antigen precursor [Homo sapiens]
Length = 240
Score = 33.9 bits (76), Expect = 0.11
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 88 FQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSRE 125
F+GR+ ++GS+D +++IT+ + L+D+G YTC E
Sbjct: 84 FRGRIDFSGSQD--NLTITMHRLQLSDTGTYTCQAITE 119
>gi|11386199 poliovirus receptor-related 3 [Homo sapiens]
Length = 549
Score = 33.9 bits (76), Expect = 0.11
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 24 PVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQE 83
P+ VE AV G + L+C+ E E T + W + +
Sbjct: 59 PIIVE--PHVTAVWGKNVSLKCLI----EVNETITQISWEKIHGKSSQTVAVHHPQYGFS 112
Query: 84 VESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTC 120
V+ +QGR+ + + L D +IT+ N+ +DSG Y C
Sbjct: 113 VQGEYQGRVLFK-NYSLNDATITLHNIGFSDSGKYIC 148
>gi|7706529 CD244 natural killer cell receptor 2B4 [Homo sapiens]
Length = 365
Score = 33.5 bits (75), Expect = 0.14
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 13/117 (11%)
Query: 94 WNGSKDLQDV-SITVLN--VTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAG 150
+ GSK +Q ++T L+ V +N + YTCNVS +E+H L +T++
Sbjct: 165 YRGSKLIQTAGNLTYLDEEVDINGTHTYTCNVSNPVSWESH----------TLNLTQDCQ 214
Query: 151 EDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKVSKAEEAAQENASDYLAIPSENKE 207
+ I+++ L+L +C + + E+ ++ + ++L I + K+
Sbjct: 215 NAHQEFRFWPFLVIIVILSALFLGTLACFCVWRRKRKEKQSETSPKEFLTIYEDVKD 271
>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
sapiens]
Length = 365
Score = 33.5 bits (75), Expect = 0.14
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 27 VEVPSET-EAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKD----FLIYEYRNGH 81
+ P E E +G L C + E+ + +EW P + ++Y +
Sbjct: 22 ITTPEEMIEKAKGETAYLPCKFTLSPED-QGPLDIEWLISPADNQKVDQVIILYSGDKIY 80
Query: 82 QEVESPFQGRLQWNGSKDLQ--DVSITVLNVTLNDSGLYTCNVSR 124
+ +GR+ + S DL+ D SI V N+ L+D G Y C V +
Sbjct: 81 DDYYPDLKGRVHFT-SNDLKSGDASINVTNLQLSDIGTYQCKVKK 124
>gi|229577039 butyrophilin-like 8 isoform 4 precursor [Homo sapiens]
Length = 340
Score = 33.5 bits (75), Expect = 0.14
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 47 SCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNG-SKDLQD--- 102
SC + A + F+R G +++ YR+G + PF Q+ G +K ++D
Sbjct: 39 SCFLSPKTNAEAMEVRFFR--GQFSSVVHLYRDGKDQ---PFMQMPQYQGRTKLVKDSIA 93
Query: 103 ---VSITVLNVTLNDSGLYTCNVSREFEFE 129
+S+ + N+T+ D+GLY C +S + ++
Sbjct: 94 EGRISLRLENITVLDAGLYGCRISSQSYYQ 123
>gi|94957742 butyrophilin-like 8 isoform 2 precursor [Homo sapiens]
Length = 500
Score = 33.5 bits (75), Expect = 0.14
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 47 SCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNG-SKDLQD--- 102
SC + A + F+R G +++ YR+G + PF Q+ G +K ++D
Sbjct: 39 SCFLSPKTNAEAMEVRFFR--GQFSSVVHLYRDGKDQ---PFMQMPQYQGRTKLVKDSIA 93
Query: 103 ---VSITVLNVTLNDSGLYTCNVSREFEFE 129
+S+ + N+T+ D+GLY C +S + ++
Sbjct: 94 EGRISLRLENITVLDAGLYGCRISSQSYYQ 123
>gi|13376271 butyrophilin-like 8 isoform 1 precursor [Homo sapiens]
Length = 347
Score = 33.5 bits (75), Expect = 0.14
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 47 SCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNG-SKDLQD--- 102
SC + A + F+R G +++ YR+G + PF Q+ G +K ++D
Sbjct: 39 SCFLSPKTNAEAMEVRFFR--GQFSSVVHLYRDGKDQ---PFMQMPQYQGRTKLVKDSIA 93
Query: 103 ---VSITVLNVTLNDSGLYTCNVSREFEFE 129
+S+ + N+T+ D+GLY C +S + ++
Sbjct: 94 EGRISLRLENITVLDAGLYGCRISSQSYYQ 123
>gi|14150145 matrix-remodelling associated 8 [Homo sapiens]
Length = 442
Score = 33.5 bits (75), Expect = 0.14
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 59 VVEWFYRPEGGKDF--LIYEYRNGHQEV-ESPFQGRLQWNGSK-DLQDVSITVLNVTLND 114
V+ W R GG L+ Y G Q V E+ +GRL+ + S D + S+ + V D
Sbjct: 72 VLHWDLRGPGGGPARRLLDLYSAGEQRVYEARDRGRLELSASAFDDGNFSLLIRAVEETD 131
Query: 115 SGLYTCNVSREF 126
+GLYTCN+ +
Sbjct: 132 AGLYTCNLHHHY 143
>gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo
sapiens]
Length = 354
Score = 33.1 bits (74), Expect = 0.18
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 81 HQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFE 127
H++ +QGR+ G D D S+ + ++TL D G Y C V E
Sbjct: 101 HKKTYGGYQGRVFLKGGSD-SDASLVITDLTLEDYGRYKCEVIEGLE 146
>gi|209413732 poliovirus receptor isoform delta [Homo sapiens]
Length = 392
Score = 33.1 bits (74), Expect = 0.18
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 7 LFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRP 66
L +A LVL + V V+ P++ G+ + L C + EV + + W
Sbjct: 11 LLLVALLVLSWPPPGTGDVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHG 70
Query: 67 EGGKDFLIYEYRNGHQEVESPFQGRLQWNGSK---DLQDVSITVLNVTLNDSGLYTC 120
E G ++ G ES RL++ ++ +L++ S+ + + + D G YTC
Sbjct: 71 ESG-SMAVFHQTQGPSYSESK---RLEFVAARLGAELRNASLRMFGLRVEDEGNYTC 123
>gi|209413730 poliovirus receptor isoform gamma [Homo sapiens]
Length = 364
Score = 33.1 bits (74), Expect = 0.18
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 7 LFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRP 66
L +A LVL + V V+ P++ G+ + L C + EV + + W
Sbjct: 11 LLLVALLVLSWPPPGTGDVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHG 70
Query: 67 EGGKDFLIYEYRNGHQEVESPFQGRLQWNGSK---DLQDVSITVLNVTLNDSGLYTC 120
E G ++ G ES RL++ ++ +L++ S+ + + + D G YTC
Sbjct: 71 ESG-SMAVFHQTQGPSYSESK---RLEFVAARLGAELRNASLRMFGLRVEDEGNYTC 123
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,938,047
Number of Sequences: 37866
Number of extensions: 331871
Number of successful extensions: 1393
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 1244
Number of HSP's gapped (non-prelim): 255
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.