Guide to the Human Genome
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Name: ZNF642 Sequence: fasta or formatted (526aa) NCBI GI: 93004100
Description:

zinc finger protein 642

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         23           1
 C cysteine            3.8         20           2
 D aspartate           3.2         17           2
 E glutamate           9.5         50           2
 F phenylalanine       3.4         18           1
 G glycine             4.6         24           1
 H histidine           7.0         37           2
 I isoleucine          5.5         29           2
 K lysine              8.4         44           2
 L leucine             6.3         33           2
 M methionine          1.7          9           2
 N asparagine          3.4         18           1
 P proline             4.0         21           1
 Q glutamine           5.1         27           2
 R arginine            6.7         35           2
 S serine              7.4         39           2
 T threonine           7.6         40           1
 V valine              3.8         20           1
 W tryptophan          0.8          4           1
 Y tyrosine            3.4         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 642 
ZNF643                0.511   zinc finger protein 643 
ZNF184                0.394   zinc finger protein 184 
ZNF583                0.390   zinc finger protein 583 
ZNF583                0.390   zinc finger protein 583 
ZNF583                0.390   zinc finger protein 583 
ZNF570                0.383   zinc finger protein 570 
ZNF10                 0.374   zinc finger protein 10 
ZNF135                0.368   zinc finger protein 135 
ZNF287                0.367   zinc finger protein 287 
ZNF383                0.367   zinc finger protein 383 
DKFZp686E2433         0.361   hypothetical protein LOC345462 
ZNF461                0.361   gonadotropin inducible transcription repressor 1 [Ho...
ZNF568                0.357   zinc finger protein 568 
ZNF624                0.354   zinc finger protein 624 
ZNF286A               0.353   zinc finger protein 286 
ZNF286A               0.353   zinc finger protein 286 
ZNF565                0.350   zinc finger protein 565 
ZNF565                0.350   zinc finger protein 565 
ZNF582                0.347   zinc finger protein 582 
ZNF713                0.346   zinc finger protein 713 
ZNF354C               0.342   zinc finger protein 354C 
LOC646864             0.340   PREDICTED: similar to hCG36734 
LOC646864             0.340   PREDICTED: similar to hCG36734 
LOC646864             0.340   PREDICTED: similar to hCG36734 
ZNF527                0.340   zinc finger protein 527 
ZNF480                0.339   zinc finger protein 480 
LOC100287429          0.338   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.338   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.338   PREDICTED: hypothetical protein XP_002343927 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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