PRPF8 37254

Name: PRPF8	Sequence: fasta or formatted (2335aa)		NCBI GI: 91208426
Description: U5 snRNP-specific protein		Referenced in: Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.3 123 2 C cysteine 1.0 23 1 D aspartate 5.5 128 3 E glutamate 6.0 140 2 F phenylalanine 4.4 102 2 G glycine 4.5 104 2 H histidine 3.1 73 2 I isoleucine 6.1 142 3 K lysine 6.5 152 2 L leucine 10.4 242 2 M methionine 2.6 60 2 N asparagine 5.1 118 2 P proline 5.7 134 3 Q glutamine 4.8 113 2 R arginine 6.4 149 2 S serine 4.6 108 2 T threonine 5.6 131 3 V valine 5.5 128 2 W tryptophan 2.6 61 2 Y tyrosine 4.5 104 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 U5 snRNP-specific protein ANKRD17 0.003 ankyrin repeat domain protein 17 isoform a ANKRD17 0.003 ankyrin repeat domain protein 17 isoform b EIF3A 0.003 eukaryotic translation initiation factor 3, subunit 1... STAMBP 0.002 STAM binding protein STAMBP 0.002 STAM binding protein STAMBP 0.002 STAM binding protein STAMBPL1 0.002 STAM binding protein-like 1 NPTN 0.002 neuroplastin isoform c precursor NPTN 0.002 neuroplastin isoform b precursor AMPH 0.002 amphiphysin isoform 2 AMPH 0.002 amphiphysin isoform 1 PHLDB1 0.001 pleckstrin homology-like domain, family B, member 1... PHLDB1 0.001 pleckstrin homology-like domain, family B, member 1... PHLDB1 0.001 pleckstrin homology-like domain, family B, member 1 ... CROT 0.001 peroxisomal carnitine O-octanoyltransferase isoform... CROT 0.001 peroxisomal carnitine O-octanoyltransferase isoform ... JUN 0.001 jun oncogene TPR 0.001 nuclear pore complex-associated protein TPR ELTD1 0.001 EGF, latrophilin and seven transmembrane domain con... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.