Guide to the Human Genome
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Name: PSD3 Sequence: fasta or formatted (513aa) NCBI GI: 45827716
Description:

ADP-ribosylation factor guanine nucleotide factor 6 isoform b

Referenced in:

ADP-Ribosylation Factors

Other entries for this name:
alt prot [1047aa] ADP-ribosylation factor guanine nucleotide factor 6 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         36           2
 C cysteine            1.6          8           2
 D aspartate           5.1         26           2
 E glutamate           8.6         44           2
 F phenylalanine       4.1         21           2
 G glycine             4.9         25           2
 H histidine           3.1         16           2
 I isoleucine          3.5         18           1
 K lysine             11.7         60           3
 L leucine             9.2         47           2
 M methionine          1.6          8           1
 N asparagine          4.7         24           2
 P proline             4.5         23           2
 Q glutamine           2.9         15           1
 R arginine            3.9         20           1
 S serine              8.2         42           2
 T threonine           6.4         33           3
 V valine              4.9         25           1
 W tryptophan          1.0          5           1
 Y tyrosine            3.3         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ADP-ribosylation factor guanine nucleotide factor 6 ... 
PSD3                  0.971   ADP-ribosylation factor guanine nucleotide factor 6...
PSD2                  0.566   pleckstrin and Sec7 domain containing 2 
PSD                   0.554   pleckstrin and Sec7 domain containing 
PSD4                  0.428   pleckstrin and Sec7 domain containing 4 
CYTH3                 0.092   cytohesin 3 
CYTH1                 0.088   cytohesin 1 isoform 1 
CYTH1                 0.087   cytohesin 1 isoform 2 
CYTH2                 0.083   cytohesin 2 isoform 2 
CYTH2                 0.083   cytohesin 2 isoform 1 
GBF1                  0.077   golgi-specific brefeldin A resistant guanine nucleoti...
ARFGEF1               0.074   brefeldin A-inhibited guanine nucleotide-exchange pr...
CYTH4                 0.071   cytohesin 4 
IQSEC3                0.065   IQ motif and Sec7 domain 3 
IQSEC1                0.063   IQ motif and Sec7 domain 1 isoform a 
IQSEC1                0.063   IQ motif and Sec7 domain 1 isoform b 
ARFGEF2               0.063   ADP-ribosylation factor guanine nucleotide-exchange...
IQSEC2                0.058   IQ motif and Sec7 domain 2 isoform 2 
IQSEC2                0.058   IQ motif and Sec7 domain 2 isoform1 
SPTBN4                0.042   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
SPTBN2                0.037   spectrin, beta, non-erythrocytic 2 
SPTB                  0.035   spectrin beta isoform a 
SPTBN1                0.034   spectrin, beta, non-erythrocytic 1 isoform 1 
ARHGAP23              0.031   Rho GTPase activating protein 23 
ARHGAP21              0.030   Rho GTPase activating protein 21 
FBXO8                 0.029   F-box only protein 8 
TIAM1                 0.028   T-cell lymphoma invasion and metastasis 1 
TIAM2                 0.024   T-cell lymphoma invasion and metastasis 2 isoform a ...
PLEKHA6               0.023   phosphoinositol 3-phosphate-binding protein-3 
PLEKHO1               0.020   pleckstrin homology domain containing, family O memb...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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