Guide to the Human Genome
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Name: GBF1 Sequence: fasta or formatted (1859aa) NCBI GI: 4758416
Description:

golgi-specific brefeldin A resistant guanine nucleotide exchange factor 1

Referenced in:

ADP-Ribosylation Factors
ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8        127           2
 C cysteine            1.9         36           2
 D aspartate           5.3         99           3
 E glutamate           7.7        144           2
 F phenylalanine       3.4         64           1
 G glycine             5.4        101           3
 H histidine           2.9         54           1
 I isoleucine          4.6         86           2
 K lysine              5.0         93           3
 L leucine            12.2        226           3
 M methionine          2.8         52           1
 N asparagine          3.3         61           1
 P proline             6.5        121           4
 Q glutamine           3.8         71           2
 R arginine            5.0         93           2
 S serine              8.8        164           4
 T threonine           5.9        109           2
 V valine              5.7        106           2
 W tryptophan          1.0         19           1
 Y tyrosine            1.8         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   golgi-specific brefeldin A resistant guanine nucleoti... 
ARFGEF2               0.063   ADP-ribosylation factor guanine nucleotide-exchange...
ARFGEF1               0.056   brefeldin A-inhibited guanine nucleotide-exchange pr...
CYTH3                 0.034   cytohesin 3 
CYTH1                 0.034   cytohesin 1 isoform 2 
CYTH1                 0.034   cytohesin 1 isoform 1 
CYTH2                 0.032   cytohesin 2 isoform 2 
CYTH2                 0.032   cytohesin 2 isoform 1 
CYTH4                 0.031   cytohesin 4 
IQSEC1                0.030   IQ motif and Sec7 domain 1 isoform a 
IQSEC1                0.030   IQ motif and Sec7 domain 1 isoform b 
IQSEC3                0.030   IQ motif and Sec7 domain 3 
IQSEC2                0.029   IQ motif and Sec7 domain 2 isoform 2 
IQSEC2                0.029   IQ motif and Sec7 domain 2 isoform1 
PSD3                  0.021   ADP-ribosylation factor guanine nucleotide factor 6 ...
PSD3                  0.021   ADP-ribosylation factor guanine nucleotide factor 6...
PSD                   0.021   pleckstrin and Sec7 domain containing 
PSD2                  0.020   pleckstrin and Sec7 domain containing 2 
PSD4                  0.017   pleckstrin and Sec7 domain containing 4 
FBXO8                 0.008   F-box only protein 8 
FLJ22184              0.008   PREDICTED: hypothetical protein FLJ22184 
C6orf132              0.007   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.007   PREDICTED: chromosome 6 open reading frame 132 [Hom...
FLJ22184              0.007   PREDICTED: hypothetical protein LOC80164 
C6orf132              0.007   PREDICTED: hypothetical protein LOC647024 
RREB1                 0.007   ras responsive element binding protein 1 isoform 2 [...
RREB1                 0.007   ras responsive element binding protein 1 isoform 1 [...
PRR12                 0.007   proline rich 12 
WIPF3                 0.007   WAS/WASL interacting protein family, member 3 [Homo...
KIAA0754              0.006   hypothetical protein LOC643314 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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