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Search of human proteins with 88943822
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|88943822 PREDICTED: hypothetical protein LOC644006 [Homo
sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|88943822 PREDICTED: hypothetical protein LOC644006 [Homo sapi... 387 e-108
gi|239747623 PREDICTED: hypothetical protein XP_002347917 [Homo ... 385 e-108
gi|169160953 PREDICTED: hypothetical LOC644006 [Homo sapiens] 382 e-106
gi|4506561 ring finger protein 4 [Homo sapiens] 362 e-101
gi|51479192 ring finger protein 1 [Homo sapiens] 47 8e-06
gi|6005747 ring finger protein 2 [Homo sapiens] 46 2e-05
gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo s... 46 2e-05
gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo... 46 2e-05
gi|8923898 zinc finger protein 313 [Homo sapiens] 46 2e-05
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 45 3e-05
gi|15208660 tripartite motif protein 21 [Homo sapiens] 44 6e-05
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens] 44 1e-04
gi|221139764 PHD and ring finger domains 1 [Homo sapiens] 43 1e-04
gi|33859668 Rabring 7 [Homo sapiens] 43 1e-04
gi|37595555 ring finger protein 125 [Homo sapiens] 43 1e-04
gi|20162564 tripartite motif-containing 40 [Homo sapiens] 43 1e-04
gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo ... 42 2e-04
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 41 7e-04
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 40 0.001
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 40 0.001
gi|31742478 ring finger protein 3 [Homo sapiens] 40 0.001
gi|30520320 ring finger protein 166 [Homo sapiens] 40 0.001
gi|24025688 ligand of numb-protein X 2 [Homo sapiens] 40 0.001
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 40 0.001
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 40 0.001
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 40 0.001
gi|21071001 autocrine motility factor receptor [Homo sapiens] 40 0.001
gi|31542779 tripartite motif family-like 1 [Homo sapiens] 40 0.001
gi|87241872 ring finger protein 151 [Homo sapiens] 40 0.002
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 39 0.002
>gi|88943822 PREDICTED: hypothetical protein LOC644006 [Homo
sapiens]
Length = 190
Score = 387 bits (995), Expect = e-108
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
Sbjct: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
Query: 61 LTHNDSVVIVDKRRRPRRNARRLPQDHADSCMVSSDDELLSRDRDVYVTTHTSRNTRDEG 120
LTHNDSVVIVDKRRRPRRNARRLPQDHADSCMVSSDDELLSRDRDVYVTTHTSRNTRDEG
Sbjct: 61 LTHNDSVVIVDKRRRPRRNARRLPQDHADSCMVSSDDELLSRDRDVYVTTHTSRNTRDEG 120
Query: 121 AIGLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
AIGLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
Sbjct: 121 AIGLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
Query: 181 NHKQYHSIHI 190
NHKQYHSIHI
Sbjct: 181 NHKQYHSIHI 190
>gi|239747623 PREDICTED: hypothetical protein XP_002347917 [Homo
sapiens]
Length = 190
Score = 385 bits (990), Expect = e-108
Identities = 189/190 (99%), Positives = 189/190 (99%)
Query: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
Sbjct: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
Query: 61 LTHNDSVVIVDKRRRPRRNARRLPQDHADSCMVSSDDELLSRDRDVYVTTHTSRNTRDEG 120
LTHNDSVVIVDKRRRPRRNARRLPQDHADSCMVSSDDELLSRDRDVYVTTHTSRNTRDEG
Sbjct: 61 LTHNDSVVIVDKRRRPRRNARRLPQDHADSCMVSSDDELLSRDRDVYVTTHTSRNTRDEG 120
Query: 121 AIGLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
A GLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
Sbjct: 121 ATGLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
Query: 181 NHKQYHSIHI 190
NHKQYHSIHI
Sbjct: 181 NHKQYHSIHI 190
>gi|169160953 PREDICTED: hypothetical LOC644006 [Homo sapiens]
Length = 190
Score = 382 bits (980), Expect = e-106
Identities = 188/190 (98%), Positives = 188/190 (98%)
Query: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
Sbjct: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
Query: 61 LTHNDSVVIVDKRRRPRRNARRLPQDHADSCMVSSDDELLSRDRDVYVTTHTSRNTRDEG 120
LTHNDSVVIVDKRRRPRRNARRLPQDHADS MVSSDDELLSRDRDVYVTTHTSRNTRDEG
Sbjct: 61 LTHNDSVVIVDKRRRPRRNARRLPQDHADSSMVSSDDELLSRDRDVYVTTHTSRNTRDEG 120
Query: 121 AIGLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
A GLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
Sbjct: 121 ATGLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
Query: 181 NHKQYHSIHI 190
NHKQYHSIHI
Sbjct: 181 NHKQYHSIHI 190
>gi|4506561 ring finger protein 4 [Homo sapiens]
Length = 190
Score = 362 bits (930), Expect = e-101
Identities = 178/190 (93%), Positives = 182/190 (95%)
Query: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
Sbjct: 1 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD 60
Query: 61 LTHNDSVVIVDKRRRPRRNARRLPQDHADSCMVSSDDELLSRDRDVYVTTHTSRNTRDEG 120
LTHNDSVVIVD+RRRPRRNARRLPQDHADSC+VSSDDE LSRDRDVYVTTHT RN RDEG
Sbjct: 61 LTHNDSVVIVDERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEG 120
Query: 121 AIGLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
A GLRPSGTV CPICMD YSEIVQN RLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
Sbjct: 121 ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
Query: 181 NHKQYHSIHI 190
NHK+YH I+I
Sbjct: 181 NHKRYHPIYI 190
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 47.4 bits (111), Expect = 8e-06
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKQ 184
CPIC+D + + + EC H FCS C+ +L++ N CPTCRKK+ K+
Sbjct: 48 CPICLDML------KNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKR 95
>gi|6005747 ring finger protein 2 [Homo sapiens]
Length = 336
Score = 46.2 bits (108), Expect = 2e-05
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKQ 184
CPIC+D + + + EC H FC+ C+ +L++ N CPTCRKK+ K+
Sbjct: 51 CPICLDML------KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKR 98
>gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo
sapiens]
Length = 731
Score = 46.2 bits (108), Expect = 2e-05
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 182
CPIC D E T+CGH FC +C+ SL++ N CP C +++
Sbjct: 136 CPICFDMIEEAYM-------TKCGHSFCYKCIHQSLEDNNRCPKCNYVVDN 179
>gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo
sapiens]
Length = 707
Score = 46.2 bits (108), Expect = 2e-05
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 182
CPIC D E T+CGH FC +C+ SL++ N CP C +++
Sbjct: 136 CPICFDMIEEAYM-------TKCGHSFCYKCIHQSLEDNNRCPKCNYVVDN 179
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 45.8 bits (107), Expect = 2e-05
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 126 PSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKI 180
P G CP+C++ Y + VQ CGHVFCS CL++ LK C CR +
Sbjct: 23 PLGRFTCPVCLEVYEKPVQ-------VPCGHVFCSACLQECLKPKKPVCGVCRSAL 71
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 45.4 bits (106), Expect = 3e-05
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 81 RRLPQDHADSCMVSSDDELLSRDRDVYVTTHTSRNTRDEGAIGLRPSGT-VGCPICMDRY 139
R+ P D D+ +++ ++ +D ++ S N+ E + GL T C +CM
Sbjct: 401 RQFPDDVEDAPDLNAPGKIPKKD----LSLQRSPNSETEESQGLSLDVTDFECALCMRLL 456
Query: 140 SEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 181
E V +T CGH FC +CL L +A CP C+ K++
Sbjct: 457 FEPV-------TTPCGHTFCLKCLERCLDHAPHCPLCKDKLS 491
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 44.3 bits (103), Expect = 6e-05
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 130 VGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKK 179
V CPIC+D + E V S ECGH FC +C+ K + CP CR++
Sbjct: 14 VTCPICLDPFVEPV-------SIECGHSFCQECISQVGKGGGSVCPVCRQR 57
>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
Length = 485
Score = 43.5 bits (101), Expect = 1e-04
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKQY 185
C IC + + E V + C H FCS C+ + +K CP CRK I K Y
Sbjct: 403 CIICSEYFIEAV-------TLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTY 449
>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
Length = 1648
Score = 43.1 bits (100), Expect = 1e-04
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 23/108 (21%)
Query: 86 DHADSCMVSSDDELLSRDRDVYVTTHTSRNTRDEGAIGLRPSGTVG-------------- 131
+H D +DE S + D+ + S ++ D+G L +GT G
Sbjct: 49 EHGDG--TDGEDEGASEEEDLEDRSG-SEDSEDDGETLLEVAGTQGKLEAAGSFNSDDDA 105
Query: 132 --CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 177
CPIC++ + +++ + C H FC C+ + KNAN+CP R
Sbjct: 106 ESCPICLNAF----RDQAVGTPENCAHYFCLDCIVEWSKNANSCPVDR 149
>gi|33859668 Rabring 7 [Homo sapiens]
Length = 304
Score = 43.1 bits (100), Expect = 1e-04
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 103 DRDVYVTTHTSRNTRDEGAIGLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQC 162
D++ + T T+++ +GL CP+C + Y+ + R+L C H F S C
Sbjct: 205 DKEKITSLPTVTVTQEQVDMGLE------CPVCKEDYTVEEEVRQL----PCNHFFHSSC 254
Query: 163 LRDSLKNANTCPTCRKKIN 181
+ L+ +TCP CRK +N
Sbjct: 255 IVPWLELHDTCPVCRKSLN 273
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 43.1 bits (100), Expect = 1e-04
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 126 PSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCR 177
P + C +C++ + V+ R CGHVFC C+ SLKN TCP CR
Sbjct: 31 PVTSFDCAVCLEVLHQPVRTR-------CGHVFCRSCIATSLKNNKWTCPYCR 76
>gi|20162564 tripartite motif-containing 40 [Homo sapiens]
Length = 229
Score = 43.1 bits (100), Expect = 1e-04
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 12/52 (23%)
Query: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANT-----CPTCRK 178
CPIC + E V ST CGH+FC CL ++ A+ CP CRK
Sbjct: 14 CPICQESLKEAV-------STNCGHLFCRVCLTQHVEKASASGVFCCPLCRK 58
>gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo
sapiens]
Length = 1045
Score = 42.4 bits (98), Expect = 2e-04
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKQYHSI 188
CPIC+DR+ + R C H FC +C+++ KN CP C++ + +HS+
Sbjct: 103 CPICLDRFDNVSYLDR------CLHKFCFRCVQEWSKNKAECPLCKQPFD-SIFHSV 152
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 40.8 bits (94), Expect = 7e-04
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKQY 185
C +CM + E V +T CGH FC CL L +A CP C++ + K+Y
Sbjct: 479 CSLCMRLFFEPV-------TTPCGHSFCKNCLERCLDHAPYCPLCKESL--KEY 523
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 150 VSTECGHVFCSQCLRDSLKNANTCPTCRKKI 180
V+ CGH +C +CLR L+ C CR ++
Sbjct: 134 VTVPCGHSYCRRCLRRELR--ARCRLCRDRL 162
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 40.4 bits (93), Expect = 0.001
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRK 178
CPICM+ ++E +L+ CGH C QCL L N CP C K
Sbjct: 20 CPICMESFTEEQLRPKLL---HCGHTICRQCLEKLLASSINGVRCPFCSK 66
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 40.4 bits (93), Expect = 0.001
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRK 178
CPICM+ ++E +L+ CGH C QCL L N CP C K
Sbjct: 20 CPICMESFTEEQLRPKLL---HCGHTICRQCLEKLLASSINGVRCPFCSK 66
>gi|31742478 ring finger protein 3 [Homo sapiens]
Length = 242
Score = 40.4 bits (93), Expect = 0.001
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 152 TECGHVFCSQCLRDSLKNANTCPTCR 177
TEC H FC CL L+ NTCPTCR
Sbjct: 31 TECLHTFCRSCLVKYLEENNTCPTCR 56
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 40.4 bits (93), Expect = 0.001
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKQ 184
CPIC++ Y R + CGH FC +CL+ L+ + CP CR + K+
Sbjct: 33 CPICLEVY------HRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFDPKK 80
>gi|24025688 ligand of numb-protein X 2 [Homo sapiens]
Length = 690
Score = 40.4 bits (93), Expect = 0.001
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 150 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 183
+ T CGH FC +CLR+ L+ + CP RK+++ K
Sbjct: 61 LDTPCGHTFCYKCLRNFLQEKDFCPLDRKRLHFK 94
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 124 LRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCL-RDSLK-----NANTCPTCR 177
L P+ V C IC+ + + +L +CGHVFC +CL R SL NA CP CR
Sbjct: 56 LPPASPVECLICVSSFDGVF---KLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCR 112
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 124 LRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCL-RDSLK-----NANTCPTCR 177
L P+ V C IC+ + + +L +CGHVFC +CL R SL NA CP CR
Sbjct: 56 LPPASPVECLICVSSFDGVF---KLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCR 112
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 124 LRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCL-RDSLK-----NANTCPTCR 177
L P+ V C IC+ + + +L +CGHVFC +CL R SL NA CP CR
Sbjct: 56 LPPASPVECLICVSSFDGVF---KLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCR 112
>gi|21071001 autocrine motility factor receptor [Homo sapiens]
Length = 643
Score = 40.0 bits (92), Expect = 0.001
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 181
C IC D R+L CGH+F + CLR L+ +CPTCR +N
Sbjct: 341 CAICWDSMQAA---RKL----PCGHLFHNSCLRSWLEQDTSCPTCRMSLN 383
>gi|31542779 tripartite motif family-like 1 [Homo sapiens]
Length = 468
Score = 40.0 bits (92), Expect = 0.001
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANT---CPTCRKKINHKQYHS 187
C IC+D +S V +TECGH FC CL S + NT CP C + + + S
Sbjct: 16 CFICLDYFSSPV-------TTECGHSFCLVCLLRSWEEHNTPLSCPECWRTLEGPHFQS 67
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 39.7 bits (91), Expect = 0.002
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 154 CGHVFCSQCLRDSLKNANTCPTCRKKINHKQ 184
C H+FC +C+ L TCP CRK++ K+
Sbjct: 35 CSHIFCKKCILRWLARQKTCPCCRKEVKRKK 65
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 39.3 bits (90), Expect = 0.002
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 114 RNTRDEGAIGLRPSGTVGCPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLKNANTC 173
R + +E A+ P C +C++ RR +T CGH+FC +C+ + C
Sbjct: 279 RASLEERAVSRNPL----CTLCLEE-------RRHPTATPCGHLFCWECITAWCSSKAEC 327
Query: 174 PTCRKK 179
P CR+K
Sbjct: 328 PLCREK 333
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,178,979
Number of Sequences: 37866
Number of extensions: 301187
Number of successful extensions: 1411
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 230
Number of HSP's that attempted gapping in prelim test: 1257
Number of HSP's gapped (non-prelim): 352
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.