Guide to the Human Genome
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Name: PCGF3 Sequence: fasta or formatted (242aa) NCBI GI: 31742478
Description:

ring finger protein 3

Referenced in:

Ring Finger Proteins
Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         11           2
 C cysteine            5.0         12           1
 D aspartate           5.8         14           2
 E glutamate           7.9         19           2
 F phenylalanine       2.5          6           1
 G glycine             3.7          9           1
 H histidine           5.0         12           1
 I isoleucine          5.8         14           1
 K lysine              9.5         23           2
 L leucine            11.6         28           3
 M methionine          2.1          5           1
 N asparagine          4.1         10           2
 P proline             2.9          7           1
 Q glutamine           3.3          8           1
 R arginine            6.2         15           1
 S serine              5.8         14           2
 T threonine           5.8         14           2
 V valine              4.5         11           3
 W tryptophan          1.2          3           1
 Y tyrosine            2.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 3 
PCGF5                 0.388   polycomb group ring finger 5 
PCGF1                 0.317   polycomb group ring finger 1 
BMI1                  0.271   BMI1 polycomb ring finger oncogene 
PCGF2                 0.269   ring finger protein 110 
PCGF6                 0.265   polycomb group ring finger 6 isoform a 
PCGF6                 0.133   polycomb group ring finger 6 isoform b 
RNF2                  0.067   ring finger protein 2 
RING1                 0.054   ring finger protein 1 
CHFR                  0.052   checkpoint with forkhead and ring finger domains is...
CHFR                  0.052   checkpoint with forkhead and ring finger domains is...
CHFR                  0.052   checkpoint with forkhead and ring finger domains is...
CHFR                  0.052   checkpoint with forkhead and ring finger domains is...
CHFR                  0.052   checkpoint with forkhead and ring finger domains is...
RNF41                 0.050   ring finger protein 41 isoform 1 
RNF41                 0.050   ring finger protein 41 isoform 1 
LONRF3                0.048   LON peptidase N-terminal domain and ring finger 3 is...
LONRF3                0.048   LON peptidase N-terminal domain and ring finger 3 is...
TRIM10                0.044   tripartite motif-containing 10 isoform 1 
TRIM10                0.044   tripartite motif-containing 10 isoform 2 
TRIM75                0.042   tripartite motif-containing 75 
DTX3                  0.042   deltex homolog 3 
RFWD2                 0.040   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.040   ring finger and WD repeat domain 2 isoform d24 [Homo...
TRIM77                0.040   PREDICTED: tripartite motif-containing 77 
LOC646754             0.040   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.040   PREDICTED: tripartite motif-containing protein 64C-...
TRIM77                0.040   PREDICTED: tripartite motif-containing 77 
LOC646754             0.040   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.040   PREDICTED: tripartite motif-containing protein 64C-...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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