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Search of human proteins with 85068578
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|85068578 intercellular adhesion molecule 4 isoform 3
precursor [Homo sapiens]
(272 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|85068578 intercellular adhesion molecule 4 isoform 3 precurso... 578 e-165
gi|4504561 intercellular adhesion molecule 4 isoform 1 precursor... 274 7e-74
gi|12545402 intercellular adhesion molecule 4 isoform 2 precurso... 274 7e-74
gi|189571583 intercellular adhesion molecule 5 precursor [Homo s... 72 5e-13
gi|167466207 intercellular adhesion molecule 3 precursor [Homo s... 56 4e-08
gi|153082722 intercellular adhesion molecule 2 precursor [Homo s... 50 2e-06
gi|153082719 intercellular adhesion molecule 2 precursor [Homo s... 50 2e-06
gi|153082699 intercellular adhesion molecule 2 precursor [Homo s... 50 2e-06
gi|153082686 intercellular adhesion molecule 2 precursor [Homo s... 50 2e-06
gi|153082696 intercellular adhesion molecule 2 precursor [Homo s... 50 2e-06
gi|167466198 intercellular adhesion molecule 1 precursor [Homo s... 41 0.001
gi|25121980 dispatched B [Homo sapiens] 37 0.018
gi|239757369 PREDICTED: hypothetical protein [Homo sapiens] 35 0.053
gi|239751917 PREDICTED: hypothetical protein [Homo sapiens] 35 0.053
gi|239746407 PREDICTED: hypothetical protein XP_002343705 [Homo ... 35 0.053
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 33 0.35
gi|38787970 tensin like C1 domain containing phosphatase isoform... 31 1.0
gi|38787957 tensin like C1 domain containing phosphatase isoform... 31 1.0
gi|38787941 tensin like C1 domain containing phosphatase isoform... 31 1.0
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 31 1.0
gi|4557733 latent transforming growth factor beta binding protei... 30 1.7
gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo ... 30 2.2
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 30 2.9
gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1 is... 29 3.8
gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1 ... 29 3.8
gi|239752252 PREDICTED: hypothetical protein XP_002348181 [Homo ... 29 3.8
gi|157311649 neogenin homolog 1 [Homo sapiens] 29 3.8
gi|4758822 nephrin precursor [Homo sapiens] 29 5.0
gi|109633022 mucosal vascular addressin cell adhesion molecule 1... 29 5.0
gi|18780285 mucosal vascular addressin cell adhesion molecule 1 ... 29 5.0
>gi|85068578 intercellular adhesion molecule 4 isoform 3 precursor
[Homo sapiens]
Length = 272
Score = 578 bits (1490), Expect = e-165
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ
Sbjct: 1 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
Query: 61 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK
Sbjct: 61 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
Query: 121 TRWATSRITAYSVPGGLLGGDPEAWKPGHLFRKPGALHRPGSGQRDLDLRVCCWTPRLLA 180
TRWATSRITAYSVPGGLLGGDPEAWKPGHLFRKPGALHRPGSGQRDLDLRVCCWTPRLLA
Sbjct: 121 TRWATSRITAYSVPGGLLGGDPEAWKPGHLFRKPGALHRPGSGQRDLDLRVCCWTPRLLA 180
Query: 181 ARDLPRAPQSRRPGGPQQLGTHYTDARLEPRAHSFGLRFHRCPCRDPPHCGRCVPMQVPS 240
ARDLPRAPQSRRPGGPQQLGTHYTDARLEPRAHSFGLRFHRCPCRDPPHCGRCVPMQVPS
Sbjct: 181 ARDLPRAPQSRRPGGPQQLGTHYTDARLEPRAHSFGLRFHRCPCRDPPHCGRCVPMQVPS 240
Query: 241 YEVPGVKGDVLCRLSEKKRNMKQSGEMAIHGG 272
YEVPGVKGDVLCRLSEKKRNMKQSGEMAIHGG
Sbjct: 241 YEVPGVKGDVLCRLSEKKRNMKQSGEMAIHGG 272
>gi|4504561 intercellular adhesion molecule 4 isoform 1 precursor
[Homo sapiens]
Length = 271
Score = 274 bits (700), Expect = 7e-74
Identities = 132/138 (95%), Positives = 134/138 (97%)
Query: 1 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ
Sbjct: 1 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
Query: 61 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK
Sbjct: 61 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
Query: 121 TRWATSRITAYSVPGGLL 138
TRWATSRITAY P ++
Sbjct: 121 TRWATSRITAYKPPHSVI 138
>gi|12545402 intercellular adhesion molecule 4 isoform 2 precursor
[Homo sapiens]
Length = 237
Score = 274 bits (700), Expect = 7e-74
Identities = 132/138 (95%), Positives = 134/138 (97%)
Query: 1 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ
Sbjct: 1 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
Query: 61 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK
Sbjct: 61 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
Query: 121 TRWATSRITAYSVPGGLL 138
TRWATSRITAY P ++
Sbjct: 121 TRWATSRITAYKPPHSVI 138
>gi|189571583 intercellular adhesion molecule 5 precursor [Homo
sapiens]
Length = 924
Score = 72.0 bits (175), Expect = 5e-13
Identities = 56/183 (30%), Positives = 80/183 (43%), Gaps = 16/183 (8%)
Query: 47 PFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRA 106
PFW + P V+ G S+ LNCS +CP+P+ L T LR+ T RG W++ QL+D+R
Sbjct: 33 PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIRE 92
Query: 107 WSSLAHCLVTCAGKTRWATSRITAYSVPGGLLGGDPEAWKP-GHLF----RKPGALHRPG 161
+ C CA +T A I + P + W+P G F R PGA R
Sbjct: 93 PETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRAS 152
Query: 162 ------SGQRDLDLRVCCWTPRLLAARDLPRAPQSRRPGGPQQLGTHYT-DARLEPRAHS 214
G ++L R P L +RR + G +++ A L+ R H
Sbjct: 153 LTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARR----EDHGANFSCRAELDLRPHG 208
Query: 215 FGL 217
GL
Sbjct: 209 LGL 211
>gi|167466207 intercellular adhesion molecule 3 precursor [Homo
sapiens]
Length = 547
Score = 55.8 bits (133), Expect = 4e-08
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 39 LAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVS 98
L P F +R+ P+ + G S+ +NCS CP + +L T L + G GW +
Sbjct: 23 LTPGVQGQEFLLRVEPQNPVLSAGGSLFVNCSTDCPSSEKIALETSLSKELVASGMGWAA 82
Query: 99 YQLLDVRAWSSLAHCLVTCAGKTRWATSRITAYSVPGGLLGGDPEAWKP 147
+ L +V S + C V C G +S IT Y +P + W+P
Sbjct: 83 FNLSNVTGNSRIL-CSVYCNGSQITGSSNITVYRLPERVELAPLPPWQP 130
>gi|153082722 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 41 PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
P F V + P+ +AV+P S+++NCS +C QP+ L T L + W Y
Sbjct: 20 PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79
Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYSVP 134
+ ++ + ++ C TC+GK S ++ Y P
Sbjct: 80 VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPP 112
>gi|153082719 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 41 PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
P F V + P+ +AV+P S+++NCS +C QP+ L T L + W Y
Sbjct: 20 PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79
Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYSVP 134
+ ++ + ++ C TC+GK S ++ Y P
Sbjct: 80 VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPP 112
>gi|153082699 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 41 PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
P F V + P+ +AV+P S+++NCS +C QP+ L T L + W Y
Sbjct: 20 PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79
Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYSVP 134
+ ++ + ++ C TC+GK S ++ Y P
Sbjct: 80 VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPP 112
>gi|153082686 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 41 PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
P F V + P+ +AV+P S+++NCS +C QP+ L T L + W Y
Sbjct: 20 PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79
Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYSVP 134
+ ++ + ++ C TC+GK S ++ Y P
Sbjct: 80 VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPP 112
>gi|153082696 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 41 PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
P F V + P+ +AV+P S+++NCS +C QP+ L T L + W Y
Sbjct: 20 PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79
Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYSVP 134
+ ++ + ++ C TC+GK S ++ Y P
Sbjct: 80 VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPP 112
>gi|167466198 intercellular adhesion molecule 1 precursor [Homo
sapiens]
Length = 532
Score = 40.8 bits (94), Expect = 0.001
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 27/141 (19%)
Query: 8 SLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQL 67
+LL L A +PG G+A TSV SP V + G SV +
Sbjct: 12 ALLVLLGALFPGPGNAQ-------------------TSV------SPSKVILPRGGSVLV 46
Query: 68 NCSNSCPQPQNSSLRTPL-RQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGKTRWATS 126
CS SC QP+ + TPL ++ L G Y+L +V+ S C C A +
Sbjct: 47 TCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQE-DSQPMCYSNCPDGQSTAKT 105
Query: 127 RITAYSVPGGLLGGDPEAWKP 147
+T Y P + +W+P
Sbjct: 106 FLTVYWTPERVELAPLPSWQP 126
>gi|25121980 dispatched B [Homo sapiens]
Length = 1401
Score = 37.0 bits (84), Expect = 0.018
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 19 GVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCS-NSCPQPQ 77
G G A G + Q P+G PLAP G S S + AV P S + +CS +SCP
Sbjct: 11 GSGPAPGPGPEGEQRPEGEPLAPDGGSPD-----STQTKAVPPEASPERSCSLHSCPLED 65
Query: 78 NSSLRTPLRQGKTLRGPG 95
SS P TL+ G
Sbjct: 66 PSSSSGPPPTTSTLQPVG 83
>gi|239757369 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 35.4 bits (80), Expect = 0.053
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 6 PLSLLFFLAAAYPGVGSALGR---RTKRAQSPKGSPL---APSGTSVP--FWVRMS---- 53
P L L+ A G+G + R R + Q P+G L APS P FW + +
Sbjct: 106 PRLLFLLLSGARRGIGKGVPRGRLRRQLRQHPRGGGLLAGAPSALLPPPAFWNKAASLWI 165
Query: 54 ----PEFVAVQPGKSVQL 67
PEF++VQPG SV+L
Sbjct: 166 SFHQPEFLSVQPGGSVRL 183
>gi|239751917 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 35.4 bits (80), Expect = 0.053
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 6 PLSLLFFLAAAYPGVGSALGR---RTKRAQSPKGSPL---APSGTSVP--FWVRMS---- 53
P L L+ A G+G + R R + Q P+G L APS P FW + +
Sbjct: 106 PRLLFLLLSGARRGIGKGVPRGRLRRQLRQHPRGGGLLAGAPSALLPPPAFWNKAASLWI 165
Query: 54 ----PEFVAVQPGKSVQL 67
PEF++VQPG SV+L
Sbjct: 166 SFHQPEFLSVQPGGSVRL 183
>gi|239746407 PREDICTED: hypothetical protein XP_002343705 [Homo
sapiens]
Length = 188
Score = 35.4 bits (80), Expect = 0.053
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 6 PLSLLFFLAAAYPGVGSALGR---RTKRAQSPKGSPL---APSGTSVP--FWVRMS---- 53
P L L+ A G+G + R R + Q P+G L APS P FW + +
Sbjct: 106 PRLLFLLLSGARRGIGKGVPRGRLRRQLRQHPRGGGLLAGAPSALLPPPAFWNKAASLWI 165
Query: 54 ----PEFVAVQPGKSVQL 67
PEF++VQPG SV+L
Sbjct: 166 SFHQPEFLSVQPGGSVRL 183
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 32.7 bits (73), Expect = 0.35
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 60 QPGKSVQLNCSNSCPQP----QNSSLRTPLRQGKTLRGPGWV--SYQLLDVRAWSS---L 110
Q G S LN SNSCP+P ++ +R P+ + W+ S + +D SS +
Sbjct: 184 QNGISYVLNASNSCPKPDFICESRFMRVPINDNYCEKLLPWLDKSIEFIDKAKLSSCQVI 243
Query: 111 AHCLVTCAGKTRWATSRITAYSVPGGLLGGD 141
HCL AG +R AT I G+ D
Sbjct: 244 VHCL---AGISRSATIAIAYIMKTMGMSSDD 271
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 31.2 bits (69), Expect = 1.0
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 33 SPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLR 92
SP GSPL P + +P W+ SPE P + L S N + PL + + L
Sbjct: 902 SPDGSPLTPVPSQMP-WLVASPEPPQSSPTPAFPLAAS----YDTNGLSQPPLPEKRHLP 956
Query: 93 GPG 95
GPG
Sbjct: 957 GPG 959
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 31.2 bits (69), Expect = 1.0
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 33 SPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLR 92
SP GSPL P + +P W+ SPE P + L S N + PL + + L
Sbjct: 1026 SPDGSPLTPVPSQMP-WLVASPEPPQSSPTPAFPLAAS----YDTNGLSQPPLPEKRHLP 1080
Query: 93 GPG 95
GPG
Sbjct: 1081 GPG 1083
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 31.2 bits (69), Expect = 1.0
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 33 SPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLR 92
SP GSPL P + +P W+ SPE P + L S N + PL + + L
Sbjct: 1036 SPDGSPLTPVPSQMP-WLVASPEPPQSSPTPAFPLAAS----YDTNGLSQPPLPEKRHLP 1090
Query: 93 GPG 95
GPG
Sbjct: 1091 GPG 1093
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 31.2 bits (69), Expect = 1.0
Identities = 33/101 (32%), Positives = 41/101 (40%), Gaps = 28/101 (27%)
Query: 138 LGGDPEAWKPGHLFRKPGALHRPGSGQRDLDLRVCCWTPRLLAARDLPRAPQSRRPGGPQ 197
+GG + +PG R G+L PG RD L AR+L S GP+
Sbjct: 1367 VGGVSQCPEPG--LRHNGSLS-PGLEARDP-----------LEARELGVGETS----GPE 1408
Query: 198 QLGTHYTDARLEPR----------AHSFGLRFHRCPCRDPP 228
G Y+ + LEP A SFG RCP R PP
Sbjct: 1409 TQGEDYSSSSLEPHPADPGMETGEALSFGASPGRCPARPPP 1449
>gi|4557733 latent transforming growth factor beta binding protein 2
[Homo sapiens]
Length = 1821
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 180 AARDLPRAPQSRRPGGPQQLGTHYTDARLEPRAHSFGLRFHRCPCRDPPHCGRCV 234
A R P P P +L HY + EP A GL+ C + GRCV
Sbjct: 1695 AGHSADRTPILESPLQPSELQPHYVASHPEPPAGFEGLQAEECGILNGCENGRCV 1749
>gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo
sapiens]
Length = 918
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 134 PGGLLGGDPEAWKPGHLFRK------PGA-LHRPGSGQRDLDLRVCCWTPRLLAARDL-- 184
P L GG P A P HL R PG+ + R S +R R P + ++D
Sbjct: 795 PDYLRGGSPPAPLPAHLSRAARNSPGPGSQIERTESSRRPPPSRPIPPAPNCIVSQDFSR 854
Query: 185 PRAPQSRRPGGP 196
PR PQ P P
Sbjct: 855 PRPPQKALPANP 866
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 29.6 bits (65), Expect = 2.9
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 23 ALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLR 82
AL RR++ S KG +P G+S SPE P S S P+P+ S R
Sbjct: 1631 ALPRRSRSGSSSKGRGPSPEGSSS---TESSPEH---PPKSRTARRGSRSSPEPKTKS-R 1683
Query: 83 TPLRQGKTLRGP 94
TP R+ + P
Sbjct: 1684 TPPRRRSSRSSP 1695
>gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1
isoform 1 [Homo sapiens]
Length = 468
Score = 29.3 bits (64), Expect = 3.8
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 185 PRAPQSRRPGGPQQLGTHYTDARLEPRAHSF---GLRFHRCPCRDPPHCGRCVPMQVPSY 241
P P +PG PQ+ G DA EP + G F P R P C C + +Y
Sbjct: 125 PLEPGPPKPGVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTR--PGCEMCCRARPEAY 182
Query: 242 EVP 244
+VP
Sbjct: 183 QVP 185
>gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1
isoform 2 [Homo sapiens]
Length = 510
Score = 29.3 bits (64), Expect = 3.8
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 185 PRAPQSRRPGGPQQLGTHYTDARLEPRAHSF---GLRFHRCPCRDPPHCGRCVPMQVPSY 241
P P +PG PQ+ G DA EP + G F P R P C C + +Y
Sbjct: 167 PLEPGPPKPGVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTR--PGCEMCCRARPEAY 224
Query: 242 EVP 244
+VP
Sbjct: 225 QVP 227
>gi|239752252 PREDICTED: hypothetical protein XP_002348181 [Homo
sapiens]
Length = 311
Score = 29.3 bits (64), Expect = 3.8
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 16/86 (18%)
Query: 113 CLVTCAGKTRWATSRITAYSVP--GGLLGGDPEAWKPGHLFRKPGALHRPGSGQRDLDLR 170
C VT +G+ +S S P G L E+W PG P A HR S Q++L
Sbjct: 55 CSVTASGRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPGGDPSAGHRGHSRQQEL--- 111
Query: 171 VCCWTPRLLAARDLPRAPQSRRPGGP 196
R L A + RR G P
Sbjct: 112 -----------RTLQEACRERRQGLP 126
>gi|157311649 neogenin homolog 1 [Homo sapiens]
Length = 1461
Score = 29.3 bits (64), Expect = 3.8
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 5 FPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKS 64
F L L L PG +A R+ S SP A T PF+ + P G S
Sbjct: 16 FWLYCLLLLGRRAPGAAAA------RSGSAPQSPGASIRTFTPFYFLVEPVDTLSVRGSS 69
Query: 65 VQLNCS-NSCPQPQ 77
V LNCS S P P+
Sbjct: 70 VILNCSAYSEPSPK 83
>gi|4758822 nephrin precursor [Homo sapiens]
Length = 1241
Score = 28.9 bits (63), Expect = 5.0
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 45 SVP--FWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQL 101
SVP FW PE + V G SV+L C S P + L G R PG+ Y+L
Sbjct: 29 SVPRGFWAL--PENLTVVEGASVELRCGVSTPGSAVQWAKDGLLLGPDPRIPGFPRYRL 85
>gi|109633022 mucosal vascular addressin cell adhesion molecule 1
isoform a precursor [Homo sapiens]
Length = 382
Score = 28.9 bits (63), Expect = 5.0
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 47 PFWVRMSPEFVAVQPGKSVQLNCSNSC----PQPQNSSLRTPLRQGKTLRGPGWVSYQLL 102
P V VAV G S QL C +C Q L T L ++ G ++ +
Sbjct: 25 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNA 84
Query: 103 DVRAWSSLAHCLVTCAGKTRWATSRITAYSV-------PGGLLGGDPEAWKPGH 149
+ A + C+ +C G+T T ++ Y+ P L+ GDPE H
Sbjct: 85 SLSA-AGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVPGDPEVACTAH 137
>gi|18780285 mucosal vascular addressin cell adhesion molecule 1
isoform b precursor [Homo sapiens]
Length = 295
Score = 28.9 bits (63), Expect = 5.0
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 47 PFWVRMSPEFVAVQPGKSVQLNCSNSC----PQPQNSSLRTPLRQGKTLRGPGWVSYQLL 102
P V VAV G S QL C +C Q L T L ++ G ++ +
Sbjct: 25 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNA 84
Query: 103 DVRAWSSLAHCLVTCAGKTRWATSRITAYSV-------PGGLLGGDPEAWKPGH 149
+ A + C+ +C G+T T ++ Y+ P L+ GDPE H
Sbjct: 85 SLSA-AGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVPGDPEVACTAH 137
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,777,378
Number of Sequences: 37866
Number of extensions: 780717
Number of successful extensions: 2116
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2087
Number of HSP's gapped (non-prelim): 51
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.