Search of human proteins with 84452151

Search of human proteins with 84452151

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|84452151 nuclear prelamin A recognition factor isoform c
[Homo sapiens]
         (397 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|84452151 nuclear prelamin A recognition factor isoform c [Hom...   801   0.0  
gi|6912524 nuclear prelamin A recognition factor isoform a [Homo...   801   0.0  
gi|14165461 nuclear prelamin A recognition factor isoform b [Hom...   779   0.0  
gi|134284357 nuclear prelamin A recognition factor isoform d [Ho...   754   0.0  
gi|11968051 nuclear prelamin A recognition factor-like [Homo sap...   408   e-114
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    30   3.8  
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    30   3.8  
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ...    30   3.8  
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]     30   3.8  
gi|30794372 polybromo 1 isoform 1 [Homo sapiens]                       30   3.8  
gi|93102371 polybromo 1 isoform 2 [Homo sapiens]                       30   3.8  
gi|41281917 polybromo 1 isoform 4 [Homo sapiens]                       30   3.8  
gi|151101140 coiled-coil domain containing 2 isoform a [Homo sap...    29   8.5  
gi|151105223 coiled-coil domain containing 2 isoform a [Homo sap...    29   8.5  
gi|151105229 coiled-coil domain containing 2 isoform a [Homo sap...    29   8.5  
gi|148613880 hypothetical protein LOC145773 [Homo sapiens]             29   8.5  

>gi|84452151 nuclear prelamin A recognition factor isoform c [Homo
           sapiens]
          Length = 397

 Score =  801 bits (2069), Expect = 0.0
 Identities = 397/397 (100%), Positives = 397/397 (100%)

Query: 1   MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 60
           MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR
Sbjct: 1   MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 60

Query: 61  RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 120
           RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA
Sbjct: 61  RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 120

Query: 121 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 180
           ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES
Sbjct: 121 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 180

Query: 181 LPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHL 240
           LPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHL
Sbjct: 181 LPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHL 240

Query: 241 AHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKL 300
           AHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKL
Sbjct: 241 AHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKL 300

Query: 301 KKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQ 360
           KKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQ
Sbjct: 301 KKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQ 360

Query: 361 ELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW 397
           ELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW
Sbjct: 361 ELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW 397


>gi|6912524 nuclear prelamin A recognition factor isoform a [Homo
           sapiens]
          Length = 456

 Score =  801 bits (2069), Expect = 0.0
 Identities = 397/397 (100%), Positives = 397/397 (100%)

Query: 1   MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 60
           MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR
Sbjct: 60  MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 119

Query: 61  RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 120
           RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA
Sbjct: 120 RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 179

Query: 121 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 180
           ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES
Sbjct: 180 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 239

Query: 181 LPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHL 240
           LPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHL
Sbjct: 240 LPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHL 299

Query: 241 AHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKL 300
           AHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKL
Sbjct: 300 AHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKL 359

Query: 301 KKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQ 360
           KKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQ
Sbjct: 360 KKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQ 419

Query: 361 ELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW 397
           ELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW
Sbjct: 420 ELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW 456


>gi|14165461 nuclear prelamin A recognition factor isoform b [Homo
           sapiens]
          Length = 502

 Score =  779 bits (2012), Expect = 0.0
 Identities = 397/443 (89%), Positives = 397/443 (89%), Gaps = 46/443 (10%)

Query: 1   MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 60
           MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR
Sbjct: 60  MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 119

Query: 61  RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 120
           RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA
Sbjct: 120 RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 179

Query: 121 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 180
           ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES
Sbjct: 180 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 239

Query: 181 LPPALHGSRGADCVLTS------------------------------------------- 197
           LPPALHGSRGADCVLTS                                           
Sbjct: 240 LPPALHGSRGADCVLTSEISQAWWCTPVITATREAAARESLEPGRQRLQRDKIAPLDSSL 299

Query: 198 ---GEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNE 254
              GEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNE
Sbjct: 300 GGGGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNE 359

Query: 255 DVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLA 314
           DVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLA
Sbjct: 360 DVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLA 419

Query: 315 CAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPK 374
           CAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPK
Sbjct: 420 CAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPK 479

Query: 375 AREVLHTTYQSQERGTHSLDIKW 397
           AREVLHTTYQSQERGTHSLDIKW
Sbjct: 480 AREVLHTTYQSQERGTHSLDIKW 502


>gi|134284357 nuclear prelamin A recognition factor isoform d [Homo
           sapiens]
          Length = 408

 Score =  754 bits (1946), Expect = 0.0
 Identities = 372/373 (99%), Positives = 373/373 (100%)

Query: 25  KKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFS 84
           +KCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFS
Sbjct: 36  EKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFS 95

Query: 85  ILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGS 144
           ILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGS
Sbjct: 96  ILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGS 155

Query: 145 LVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRGADCVLTSGEIAQIM 204
           LVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRGADCVLTSGEIAQIM
Sbjct: 156 LVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRGADCVLTSGEIAQIM 215

Query: 205 EQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRAL 264
           EQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRAL
Sbjct: 216 EQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRAL 275

Query: 265 RNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRG 324
           RNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRG
Sbjct: 276 RNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRG 335

Query: 325 QAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTYQ 384
           QAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTYQ
Sbjct: 336 QAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTYQ 395

Query: 385 SQERGTHSLDIKW 397
           SQERGTHSLDIKW
Sbjct: 396 SQERGTHSLDIKW 408


>gi|11968051 nuclear prelamin A recognition factor-like [Homo
           sapiens]
          Length = 476

 Score =  408 bits (1049), Expect = e-114
 Identities = 201/400 (50%), Positives = 279/400 (69%), Gaps = 4/400 (1%)

Query: 1   MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 60
           +T+ E V ++QQ+ ++  +VL+ NK    S+ +++VVSV PQS    AA+F L+ TD +R
Sbjct: 78  ITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTAR 137

Query: 61  RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 120
           +L  F K +GVH+VFDT  +  FS+LESQ+EFVRR+R  ++  + LP+L SACPGW+ YA
Sbjct: 138 KLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADCRQALPLLASACPGWICYA 197

Query: 121 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 180
           E+  G  I  H+ TA+SPQQVMGSLVKD+FA+QQ+L+P+KI+HV V PCYDKKLEA +  
Sbjct: 198 EKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPD 257

Query: 181 LPPALHGSRGADCVLTSGEIAQIMEQGDLSVRD---AAVDTLFGDLKEDKVTRHDGASSD 237
                H +R  DCVLT+GE+ +++E+  +S+ D   A +D+L      ++ T H G  S 
Sbjct: 258 FFNQEHQTRDVDCVLTTGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSG 317

Query: 238 GHLAHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMI 297
           G+L H+FRHAA+ELF   V EVTY+ LRNKDFQEVTLEK G+V+L FA AYGFRNIQN++
Sbjct: 318 GYLEHVFRHAARELFGIHVAEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLV 377

Query: 298 LKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSA 357
            +LK+G+ P+H+VEV+AC  GCLNG GQ Q PD    + LL+ +E +Y  +    PE + 
Sbjct: 378 QRLKRGRCPYHYVEVMACPSGCLNGGGQLQAPD-RPSRELLQHVERLYGMVRAEAPEDAP 436

Query: 358 HVQELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW 397
            VQELY  WL+G +S  A  +LHT Y + E+ +  L I+W
Sbjct: 437 GVQELYTHWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 476


>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 123 VLGRPIT---AHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPC 169
           + GRP     A      + +++ G L+ D+FA+++  +PEK    + APC
Sbjct: 235 ISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPC 284


>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 123 VLGRPIT---AHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPC 169
           + GRP     A      + +++ G L+ D+FA+++  +PEK    + APC
Sbjct: 235 ISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPC 284


>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
           sapiens]
          Length = 316

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 123 VLGRPIT---AHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPC 169
           + GRP     A      + +++ G L+ D+FA+++  +PEK    + APC
Sbjct: 246 ISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPC 295


>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
          Length = 3664

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 349 PVRRPESSAHVQE-LYQEWLEGINSPKAREVLHTTYQSQERGTHSLD 394
           P   P  S H +E  Y+  L+G +  + R   H+ Y   ERGT   D
Sbjct: 114 PAYGPPPSLHAREGRYERRLDGASDNRERAYEHSAYGHHERGTGGFD 160


>gi|30794372 polybromo 1 isoform 1 [Homo sapiens]
          Length = 1602

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 17/79 (21%)

Query: 245 RHAAKELFNEDVEEVTYRALR-NKDFQEV----------------TLEKNGEVVLRFAAA 287
           R+   +LF E + EV  RA R N+   E+                 L KNGE++L  A +
Sbjct: 801 RYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALS 860

Query: 288 YGFRNIQNMILKLKKGKFP 306
           Y  +++ N + K +K K P
Sbjct: 861 YTTKHLHNDVEKERKEKLP 879


>gi|93102371 polybromo 1 isoform 2 [Homo sapiens]
          Length = 1582

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 17/79 (21%)

Query: 245 RHAAKELFNEDVEEVTYRALR-NKDFQEV----------------TLEKNGEVVLRFAAA 287
           R+   +LF E + EV  RA R N+   E+                 L KNGE++L  A +
Sbjct: 833 RYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALS 892

Query: 288 YGFRNIQNMILKLKKGKFP 306
           Y  +++ N + K +K K P
Sbjct: 893 YTTKHLHNDVEKERKEKLP 911


>gi|41281917 polybromo 1 isoform 4 [Homo sapiens]
          Length = 1582

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 17/79 (21%)

Query: 245 RHAAKELFNEDVEEVTYRALR-NKDFQEV----------------TLEKNGEVVLRFAAA 287
           R+   +LF E + EV  RA R N+   E+                 L KNGE++L  A +
Sbjct: 833 RYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALS 892

Query: 288 YGFRNIQNMILKLKKGKFP 306
           Y  +++ N + K +K K P
Sbjct: 893 YTTKHLHNDVEKERKEKLP 911


>gi|151101140 coiled-coil domain containing 2 isoform a [Homo
           sapiens]
          Length = 600

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 48/251 (19%)

Query: 171 DKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTL---FGDLKEDK 227
           +++L   +E +   +   R  D  L   +     +  +L  R+  +DT    F + K  +
Sbjct: 323 ERQLTDTKEKINQFIEEIRQLDMDLEEHQGEMNQKYKELKKREEHMDTFIETFEETKNQE 382

Query: 228 VTRHDGASSDGHLAHIFRHAAKELFN-EDVEEVTYRALR----NKDFQEVTLEKNGEVVL 282
           + R   A  + ++  +  H ++ +   E +  +T + L+    + +F+   ++K+     
Sbjct: 383 LKRK--AQIEANIVALLEHCSRNINRIEQISSITNQELKMMQDDLNFKSTEVQKSQSTAQ 440

Query: 283 RFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQME 342
              +     +IQ + L L+K       +E+L              T + H+ K+ ++QM 
Sbjct: 441 NLTS-----DIQRLQLDLQK-------MELLE----------SKMTEEQHSLKSKIKQMT 478

Query: 343 G---IYADIPVRRPESSAHVQELYQEWL---------EGINSPKAREVLHTTYQSQERGT 390
               IY D+P  +      +++L+QE +         + I   +  E      Q QE  T
Sbjct: 479 TDLEIYNDLPALKSSGEEKIKKLHQERMILSTHRNAFKKIMEKQNIEYEALKTQLQENET 538

Query: 391 HS----LDIKW 397
           HS    L+ KW
Sbjct: 539 HSQLTNLERKW 549


>gi|151105223 coiled-coil domain containing 2 isoform a [Homo
           sapiens]
          Length = 600

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 48/251 (19%)

Query: 171 DKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTL---FGDLKEDK 227
           +++L   +E +   +   R  D  L   +     +  +L  R+  +DT    F + K  +
Sbjct: 323 ERQLTDTKEKINQFIEEIRQLDMDLEEHQGEMNQKYKELKKREEHMDTFIETFEETKNQE 382

Query: 228 VTRHDGASSDGHLAHIFRHAAKELFN-EDVEEVTYRALR----NKDFQEVTLEKNGEVVL 282
           + R   A  + ++  +  H ++ +   E +  +T + L+    + +F+   ++K+     
Sbjct: 383 LKRK--AQIEANIVALLEHCSRNINRIEQISSITNQELKMMQDDLNFKSTEVQKSQSTAQ 440

Query: 283 RFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQME 342
              +     +IQ + L L+K       +E+L              T + H+ K+ ++QM 
Sbjct: 441 NLTS-----DIQRLQLDLQK-------MELLE----------SKMTEEQHSLKSKIKQMT 478

Query: 343 G---IYADIPVRRPESSAHVQELYQEWL---------EGINSPKAREVLHTTYQSQERGT 390
               IY D+P  +      +++L+QE +         + I   +  E      Q QE  T
Sbjct: 479 TDLEIYNDLPALKSSGEEKIKKLHQERMILSTHRNAFKKIMEKQNIEYEALKTQLQENET 538

Query: 391 HS----LDIKW 397
           HS    L+ KW
Sbjct: 539 HSQLTNLERKW 549


>gi|151105229 coiled-coil domain containing 2 isoform a [Homo
           sapiens]
          Length = 600

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 48/251 (19%)

Query: 171 DKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTL---FGDLKEDK 227
           +++L   +E +   +   R  D  L   +     +  +L  R+  +DT    F + K  +
Sbjct: 323 ERQLTDTKEKINQFIEEIRQLDMDLEEHQGEMNQKYKELKKREEHMDTFIETFEETKNQE 382

Query: 228 VTRHDGASSDGHLAHIFRHAAKELFN-EDVEEVTYRALR----NKDFQEVTLEKNGEVVL 282
           + R   A  + ++  +  H ++ +   E +  +T + L+    + +F+   ++K+     
Sbjct: 383 LKRK--AQIEANIVALLEHCSRNINRIEQISSITNQELKMMQDDLNFKSTEVQKSQSTAQ 440

Query: 283 RFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQME 342
              +     +IQ + L L+K       +E+L              T + H+ K+ ++QM 
Sbjct: 441 NLTS-----DIQRLQLDLQK-------MELLE----------SKMTEEQHSLKSKIKQMT 478

Query: 343 G---IYADIPVRRPESSAHVQELYQEWL---------EGINSPKAREVLHTTYQSQERGT 390
               IY D+P  +      +++L+QE +         + I   +  E      Q QE  T
Sbjct: 479 TDLEIYNDLPALKSSGEEKIKKLHQERMILSTHRNAFKKIMEKQNIEYEALKTQLQENET 538

Query: 391 HS----LDIKW 397
           HS    L+ KW
Sbjct: 539 HSQLTNLERKW 549


>gi|148613880 hypothetical protein LOC145773 [Homo sapiens]
          Length = 368

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 18/63 (28%), Positives = 30/63 (47%)

Query: 171 DKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTR 230
           ++ +E LQE +    + S G +  L + E+ Q+   GDL  R A  D     L  +  T 
Sbjct: 94  NRDIEVLQEQIRARDNISYGTNSALKTLEMRQLSGLGDLRGRVARCDASIARLSAEHKTT 153

Query: 231 HDG 233
           ++G
Sbjct: 154 YEG 156


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,817,145
Number of Sequences: 37866
Number of extensions: 637127
Number of successful extensions: 1559
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1545
Number of HSP's gapped (non-prelim): 19
length of query: 397
length of database: 18,247,518
effective HSP length: 104
effective length of query: 293
effective length of database: 14,309,454
effective search space: 4192670022
effective search space used: 4192670022
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.