Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SECISBP2 Sequence: fasta or formatted (854aa) NCBI GI: 83779010
Description:

SECIS binding protein 2

Referenced in:

Selenium Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         57           2
 C cysteine            1.4         12           1
 D aspartate           4.4         38           2
 E glutamate           8.7         74           2
 F phenylalanine       2.8         24           1
 G glycine             4.2         36           2
 H histidine           2.2         19           2
 I isoleucine          3.7         32           2
 K lysine              9.4         80           4
 L leucine             7.7         66           2
 M methionine          2.0         17           2
 N asparagine          4.0         34           2
 P proline             7.5         64           2
 Q glutamine           5.7         49           2
 R arginine            4.3         37           2
 S serine             10.2         87           2
 T threonine           5.6         48           2
 V valine              6.0         51           3
 W tryptophan          0.5          4           1
 Y tyrosine            2.9         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SECIS binding protein 2 
SECISBP2L             0.171   SECIS binding protein 2-like 
CYLC1                 0.014   cylicin, basic protein of sperm head cytoskeleton 1...
LOC100131897          0.012   hypothetical protein LOC100131897 
NEFH                  0.011   neurofilament, heavy polypeptide 200kDa 
MAP1B                 0.010   microtubule-associated protein 1B 
ASH1L                 0.010   absent, small, or homeotic 1-like 
DEK                   0.010   DEK oncogene isoform 2 
RIF1                  0.010   RAP1 interacting factor 1 
EIF5B                 0.010   eukaryotic translation initiation factor 5B 
LOC100133923          0.010   PREDICTED: similar to UPF0634 protein C 
AP3D1                 0.009   adaptor-related protein complex 3, delta 1 subunit ...
MUC16                 0.009   mucin 16 
ZMYND8                0.009   zinc finger, MYND-type containing 8 isoform c 
ZMYND8                0.009   zinc finger, MYND-type containing 8 isoform a 
ZMYND8                0.009   zinc finger, MYND-type containing 8 isoform b 
SHANK2                0.009   SH3 and multiple ankyrin repeat domains 2 isoform 1...
DEK                   0.008   DEK oncogene isoform 1 
FAM133A               0.008   hypothetical protein LOC286499 
TCHH                  0.008   trichohyalin 
INCENP                0.008   inner centromere protein antigens 135/155kDa isofor...
KIAA1210              0.008   hypothetical protein LOC57481 
RB1CC1                0.008   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.008   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
PPP1R12A              0.008   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.008   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.008   protein phosphatase 1, regulatory (inhibitor) subunit...
CIR1                  0.007   CBF1 interacting corepressor 
MYH10                 0.007   myosin, heavy polypeptide 10, non-muscle 
PABPN1                0.007   poly(A) binding protein, nuclear 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press