Search of human proteins with 8051605

Search of human proteins with 8051605

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8051605 glycophorin C isoform 2 [Homo sapiens]
         (109 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8051605 glycophorin C isoform 2 [Homo sapiens]                     223   3e-59
gi|4504229 glycophorin C isoform 1 [Homo sapiens]                     211   8e-56
gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapi...    78   2e-15
gi|54607031 immunoglobulin superfamily, member 4D [Homo sapiens]       61   2e-10
gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Ho...    61   2e-10
gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Ho...    61   2e-10
gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens]         59   8e-10
gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens]          59   8e-10
gi|18640734 contactin associated protein-like 5 [Homo sapiens]         58   2e-09
gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sap...    52   1e-07
gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sap...    52   1e-07
gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens]        40   3e-04
gi|21070967 neurexin 1 isoform beta precursor [Homo sapiens]           40   3e-04
gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]         40   3e-04
gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]        40   3e-04
gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]           40   3e-04
gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]        40   3e-04
gi|76496485 small trans-membrane and glycosylated protein [Homo ...    39   0.001
gi|76496487 small trans-membrane and glycosylated protein [Homo ...    39   0.001
gi|21686977 cell adhesion molecule 4 [Homo sapiens]                    38   0.002
gi|157427673 neurexin 3 isoform 3 precursor [Homo sapiens]             37   0.004
gi|41350305 neurexin 3 isoform 2 precursor [Homo sapiens]              37   0.004
gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens]              37   0.004
gi|27502407 CD46 antigen, complement regulatory protein isoform ...    33   0.038
gi|27502402 CD46 antigen, complement regulatory protein isoform ...    33   0.038
gi|4505463 contactin associated protein 1 precursor [Homo sapiens]     32   0.084
gi|27502415 CD46 antigen, complement regulatory protein isoform ...    32   0.084
gi|27502413 CD46 antigen, complement regulatory protein isoform ...    32   0.084
gi|33598912 activin A receptor, type IB isoform c precursor [Hom...    31   0.24 
gi|33598910 activin A receptor, type IB isoform b precursor [Hom...    31   0.24 

>gi|8051605 glycophorin C isoform 2 [Homo sapiens]
          Length = 109

 Score =  223 bits (568), Expect = 3e-59
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MWSTRSPNSTAWPLSLEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFV 60
           MWSTRSPNSTAWPLSLEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFV
Sbjct: 1   MWSTRSPNSTAWPLSLEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFV 60

Query: 61  MLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGDSSRKEYFI 109
           MLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGDSSRKEYFI
Sbjct: 61  MLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGDSSRKEYFI 109


>gi|4504229 glycophorin C isoform 1 [Homo sapiens]
          Length = 128

 Score =  211 bits (538), Expect = 8e-56
 Identities = 109/128 (85%), Positives = 109/128 (85%), Gaps = 19/128 (14%)

Query: 1   MWSTRSPNSTAWPLSLEPDPGM-------------------SGWPDGRMETSTPTIMDIV 41
           MWSTRSPNSTAWPLSLEPDPGM                   SGWPDGRMETSTPTIMDIV
Sbjct: 1   MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV 60

Query: 42  VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD 101
           VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
Sbjct: 61  VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD 120

Query: 102 SSRKEYFI 109
           SSRKEYFI
Sbjct: 121 SSRKEYFI 128


>gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapiens]
          Length = 1331

 Score = 77.8 bits (190), Expect = 2e-15
 Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 42   VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAA-LQGDPALQDAG 100
            +I GVIA V   ++  L  ++RYM+RHKGTYHTNEAKG E AESADAA +  DP   +  
Sbjct: 1263 IIGGVIAVVIFTILCTLVFLIRYMFRHKGTYHTNEAKGAESAESADAAIMNNDPNFTETI 1322

Query: 101  DSSRKEYFI 109
            D S+KE+ I
Sbjct: 1323 DESKKEWLI 1331


>gi|54607031 immunoglobulin superfamily, member 4D [Homo sapiens]
          Length = 437

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 11/106 (10%)

Query: 4   TRSPNSTAWPLSLEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLR 63
           T SP ++A   S+  DP      +G          D  +I G++A V  V +  +F++ R
Sbjct: 343 TTSPTTSATTSSIR-DPNALAGQNGP---------DHALIGGIVAVVVFVTLCSIFLLGR 392

Query: 64  YMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGDSSRKEYFI 109
           Y+ RHKGTY TNEAKG E A  AD A+      Q      +KEYFI
Sbjct: 393 YLARHKGTYLTNEAKGAEDAPDADTAIINAEGSQ-VNAEEKKEYFI 437


>gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Homo
           sapiens]
          Length = 414

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 38  MDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQ 97
           +D  VI GV+A V   ++ LL ++ RY  RHKGTY T+EAKG + A  AD A+      Q
Sbjct: 344 VDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQ 403

Query: 98  DAGDSSRKEYFI 109
           +     +KEYFI
Sbjct: 404 N-NSEEKKEYFI 414


>gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Homo
           sapiens]
          Length = 442

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 38  MDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQ 97
           +D  VI GV+A V   ++ LL ++ RY  RHKGTY T+EAKG + A  AD A+      Q
Sbjct: 372 VDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQ 431

Query: 98  DAGDSSRKEYFI 109
           +     +KEYFI
Sbjct: 432 N-NSEEKKEYFI 442


>gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens]
          Length = 398

 Score = 58.9 bits (141), Expect = 8e-10
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 42  VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD 101
           +I G++A +  +L+ +L  +  Y+ RHKGTY T+EAKG++ A  AD A+      Q  GD
Sbjct: 332 IIGGIVAFIVFLLLIMLIFLGHYLIRHKGTYLTHEAKGSDDAPDADTAIINAEGGQSGGD 391

Query: 102 SSRKEYFI 109
             +KEYFI
Sbjct: 392 -DKKEYFI 398


>gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens]
          Length = 432

 Score = 58.9 bits (141), Expect = 8e-10
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 42  VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD 101
           +I G++A +  +L+ +L  +  Y+ RHKGTY T+EAKG++ A  AD A+      Q  GD
Sbjct: 366 IIGGIVAFIVFLLLIMLIFLGHYLIRHKGTYLTHEAKGSDDAPDADTAIINAEGGQSGGD 425

Query: 102 SSRKEYFI 109
             +KEYFI
Sbjct: 426 -DKKEYFI 432


>gi|18640734 contactin associated protein-like 5 [Homo sapiens]
          Length = 1306

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 24   GWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFA 83
            G  D R   +     D  VI GVIA V  ++  ++ +M R++Y+HK ++ T++ K  E+ 
Sbjct: 1221 GKTDEREPLTNAVRSDSAVIGGVIAVVIFIIFCIIGIMTRFLYQHKQSHRTSQMKEKEYP 1280

Query: 84   ESADAALQGDPALQDAGDSSRKEYFI 109
            E+ D++ + +  LQ+     ++EYFI
Sbjct: 1281 ENLDSSFRNEIDLQNTVSECKREYFI 1306


>gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sapiens]
          Length = 1235

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 23   SGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEF 82
            SG  D R   +     D  VI G+IA V  +L+ +  + +R +Y+ K  Y  +EAK +E 
Sbjct: 1150 SGTIDDREPLANAIKSDSAVIGGLIAVVIFILLCITAIAVR-IYQQKRLYKRSEAKRSEN 1208

Query: 83   AESADAALQGDPALQDAGDSSRKEYF 108
             +SA+A L+ +  +Q+A + ++KEYF
Sbjct: 1209 VDSAEAVLKSELNIQNAVNENQKEYF 1234


>gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sapiens]
          Length = 1308

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 23   SGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEF 82
            SG  D R   +     D  VI G+IA V  +L+ +  + +R +Y+ K  Y  +EAK +E 
Sbjct: 1223 SGTIDDREPLANAIKSDSAVIGGLIAVVIFILLCITAIAVR-IYQQKRLYKRSEAKRSEN 1281

Query: 83   AESADAALQGDPALQDAGDSSRKEYF 108
             +SA+A L+ +  +Q+A + ++KEYF
Sbjct: 1282 VDSAEAVLKSELNIQNAVNENQKEYF 1307


>gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens]
          Length = 1547

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 14/100 (14%)

Query: 17   EPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNE 76
            EP PG +   +   E+S+ T M    + G++AA A+ ++ LL+ M +Y  R +G+YH +E
Sbjct: 1455 EPYPGSA---EVIRESSSTTGM----VVGIVAAAALCILILLYAMYKYRNRDEGSYHVDE 1507

Query: 77   AKG--TEFAESADAAL-QGDPALQDAGDSSR----KEYFI 109
            ++   +  A+S  A + +  P+   + + ++    KEY++
Sbjct: 1508 SRNYISNSAQSNGAVVKEKQPSSAKSSNKNKKNKDKEYYV 1547


>gi|21070967 neurexin 1 isoform beta precursor [Homo sapiens]
          Length = 442

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 14/100 (14%)

Query: 17  EPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNE 76
           EP PG +   +   E+S+ T M    + G++AA A+ ++ LL+ M +Y  R +G+YH +E
Sbjct: 350 EPYPGSA---EVIRESSSTTGM----VVGIVAAAALCILILLYAMYKYRNRDEGSYHVDE 402

Query: 77  AKG--TEFAESADAAL-QGDPALQDAGDSSR----KEYFI 109
           ++   +  A+S  A + +  P+   + + ++    KEY++
Sbjct: 403 SRNYISNSAQSNGAVVKEKQPSSAKSSNKNKKNKDKEYYV 442


>gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]
          Length = 1477

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 14/100 (14%)

Query: 17   EPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNE 76
            EP PG +   +   E+S+ T M    + G++AA A+ ++ LL+ M +Y  R +G+YH +E
Sbjct: 1385 EPYPGSA---EVIRESSSTTGM----VVGIVAAAALCILILLYAMYKYRNRDEGSYHVDE 1437

Query: 77   AKG--TEFAESADAAL-QGDPALQDAGDSSR----KEYFI 109
            ++   +  A+S  A + +  P+   + + ++    KEY++
Sbjct: 1438 SRNYISNSAQSNGAVVKEKQPSSAKSSNKNKKNKDKEYYV 1477


>gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]
          Length = 1712

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 8/113 (7%)

Query: 4    TRSPNSTAWPLSLEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLR 63
            T +P     P +    PG  G P G +E    +     ++ G++AA A+ ++ LL+ M +
Sbjct: 1601 TSAPGFPHLPTANPTGPGERG-PPGAVEVIRESSSTTGMVVGIVAAAALCILILLYAMYK 1659

Query: 64   YMYRHKGTYHTNEAKG--TEFAESADAAL-QGDPAL----QDAGDSSRKEYFI 109
            Y  R +G+Y  ++++   +  A+S  A + +  PA       A  +  KEY++
Sbjct: 1660 YRNRDEGSYQVDQSRNYISNSAQSNGAVVKEKAPAAPKTPSKAKKNKDKEYYV 1712


>gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]
          Length = 666

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 8/113 (7%)

Query: 4   TRSPNSTAWPLSLEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLR 63
           T +P     P +    PG  G P G +E    +     ++ G++AA A+ ++ LL+ M +
Sbjct: 555 TSAPGFPHLPTANPTGPGERG-PPGAVEVIRESSSTTGMVVGIVAAAALCILILLYAMYK 613

Query: 64  YMYRHKGTYHTNEAKG--TEFAESADAAL-QGDPAL----QDAGDSSRKEYFI 109
           Y  R +G+Y  ++++   +  A+S  A + +  PA       A  +  KEY++
Sbjct: 614 YRNRDEGSYQVDQSRNYISNSAQSNGAVVKEKAPAAPKTPSKAKKNKDKEYYV 666


>gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]
          Length = 1642

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 8/113 (7%)

Query: 4    TRSPNSTAWPLSLEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLR 63
            T +P     P +    PG  G P G +E    +     ++ G++AA A+ ++ LL+ M +
Sbjct: 1531 TSAPGFPHLPTANPTGPGERG-PPGAVEVIRESSSTTGMVVGIVAAAALCILILLYAMYK 1589

Query: 64   YMYRHKGTYHTNEAKG--TEFAESADAAL-QGDPAL----QDAGDSSRKEYFI 109
            Y  R +G+Y  ++++   +  A+S  A + +  PA       A  +  KEY++
Sbjct: 1590 YRNRDEGSYQVDQSRNYISNSAQSNGAVVKEKAPAAPKTPSKAKKNKDKEYYV 1642


>gi|76496485 small trans-membrane and glycosylated protein [Homo
           sapiens]
          Length = 97

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 42  VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD 101
           +IA VI  V + L+S++ ++  Y+Y++KG+Y T E   TE   SA   ++ D     A  
Sbjct: 36  LIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYEP--TEGEPSAIVQMESDL----AKG 89

Query: 102 SSRKEYFI 109
           S ++EYFI
Sbjct: 90  SEKEEYFI 97


>gi|76496487 small trans-membrane and glycosylated protein [Homo
           sapiens]
          Length = 97

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 42  VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD 101
           +IA VI  V + L+S++ ++  Y+Y++KG+Y T E   TE   SA   ++ D     A  
Sbjct: 36  LIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYEP--TEGEPSAIVQMESDL----AKG 89

Query: 102 SSRKEYFI 109
           S ++EYFI
Sbjct: 90  SEKEEYFI 97


>gi|21686977 cell adhesion molecule 4 [Homo sapiens]
          Length = 388

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 36  TIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKG-TEFAESADAALQGDP 94
           T +   ++ G++A +  +++ +L  M+    R KG+Y T+EA G  E  E+ +A L G  
Sbjct: 319 TSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEASGLDEQGEAREAFLNGSD 378

Query: 95  ALQDAGDSSRKEYFI 109
                G   ++E+FI
Sbjct: 379 -----GHKRKEEFFI 388


>gi|157427673 neurexin 3 isoform 3 precursor [Homo sapiens]
          Length = 459

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 19  DPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAK 78
           +PG+   P G  E    +     ++ G++AA A+ ++ LL+ M +Y  R +G+Y  +E +
Sbjct: 364 EPGIRRVP-GASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETR 422

Query: 79  G--TEFAESADAALQGDPALQDAGDSSRK----EYFI 109
              +  A+S    ++       +G   +K    EY++
Sbjct: 423 NYISNSAQSNGTLMKEKQQSSKSGHKKQKNKDREYYV 459


>gi|41350305 neurexin 3 isoform 2 precursor [Homo sapiens]
          Length = 432

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 19  DPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAK 78
           +PG+   P G  E    +     ++ G++AA A+ ++ LL+ M +Y  R +G+Y  +E +
Sbjct: 337 EPGIRRVP-GASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETR 395

Query: 79  G--TEFAESADAALQGDPALQDAGDSSRK----EYFI 109
              +  A+S    ++       +G   +K    EY++
Sbjct: 396 NYISNSAQSNGTLMKEKQQSSKSGHKKQKNKDREYYV 432


>gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens]
          Length = 1061

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 19   DPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAK 78
            +PG+   P G  E    +     ++ G++AA A+ ++ LL+ M +Y  R +G+Y  +E +
Sbjct: 966  EPGIRRVP-GASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETR 1024

Query: 79   G--TEFAESADAALQGDPALQDAGDSSRK----EYFI 109
               +  A+S    ++       +G   +K    EY++
Sbjct: 1025 NYISNSAQSNGTLMKEKQQSSKSGHKKQKNKDREYYV 1061


>gi|27502407 CD46 antigen, complement regulatory protein isoform 3
           precursor [Homo sapiens]
          Length = 377

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 3   STRSPNSTAWPLSLEPDPGMSGWPD-GRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVM 61
           +T+SP S+A        P +S +P   + E      +D+ VIA ++ A+ + +  +  V 
Sbjct: 291 TTKSPASSASGPRPTYKPPVSNYPGYPKPEEGILDSLDVWVIAVIVIAIVVGVAVICVVP 350

Query: 62  LRYMYRH--KGTYHTNE 76
            RY+ R   KGTY T+E
Sbjct: 351 YRYLQRRKKKGTYLTDE 367


>gi|27502402 CD46 antigen, complement regulatory protein isoform 1
           precursor [Homo sapiens]
          Length = 392

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 3   STRSPNSTAWPLSLEPDPGMSGWPD-GRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVM 61
           +T+SP S+A        P +S +P   + E      +D+ VIA ++ A+ + +  +  V 
Sbjct: 306 TTKSPASSASGPRPTYKPPVSNYPGYPKPEEGILDSLDVWVIAVIVIAIVVGVAVICVVP 365

Query: 62  LRYMYRH--KGTYHTNE 76
            RY+ R   KGTY T+E
Sbjct: 366 YRYLQRRKKKGTYLTDE 382


>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
          Length = 1384

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 13/38 (34%), Positives = 25/38 (65%)

Query: 41   VVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAK 78
            +++  ++A + + LV +L +     +R+KG+YHTNE K
Sbjct: 1284 ILLGFLVAFLLLGLVGMLVLFYLQNHRYKGSYHTNEPK 1321


>gi|27502415 CD46 antigen, complement regulatory protein isoform 9
           precursor [Homo sapiens]
          Length = 363

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 15/76 (19%)

Query: 3   STRSPNSTAWPLSLEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVML 62
           +T+SP S+A           SG+P  + E      +D+ VIA ++ A+ + +  +  V  
Sbjct: 291 TTKSPASSA-----------SGYP--KPEEGILDSLDVWVIAVIVIAIVVGVAVICVVPY 337

Query: 63  RYMYRH--KGTYHTNE 76
           RY+ R   KGTY T+E
Sbjct: 338 RYLQRRKKKGTYLTDE 353


>gi|27502413 CD46 antigen, complement regulatory protein isoform 7
           precursor [Homo sapiens]
          Length = 378

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 15/76 (19%)

Query: 3   STRSPNSTAWPLSLEPDPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVML 62
           +T+SP S+A           SG+P  + E      +D+ VIA ++ A+ + +  +  V  
Sbjct: 306 TTKSPASSA-----------SGYP--KPEEGILDSLDVWVIAVIVIAIVVGVAVICVVPY 352

Query: 63  RYMYRH--KGTYHTNE 76
           RY+ R   KGTY T+E
Sbjct: 353 RYLQRRKKKGTYLTDE 368


>gi|33598912 activin A receptor, type IB isoform c precursor [Homo
           sapiens]
          Length = 487

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 26  PDGRM-ETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAE 84
           P G + E   P++   V + G+IA    +L  ++ ++   +  H+  YH  +    E   
Sbjct: 109 PSGHLKEPEHPSMWGPVELVGIIAGPVFLLFLIIIIVFLVINYHQRVYHNRQRLDME-DP 167

Query: 85  SADAALQGDPALQD 98
           S +  L  D  LQD
Sbjct: 168 SCEMCLSKDKTLQD 181


>gi|33598910 activin A receptor, type IB isoform b precursor [Homo
           sapiens]
          Length = 476

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 26  PDGRM-ETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAE 84
           P G + E   P++   V + G+IA    +L  ++ ++   +  H+  YH  +    E   
Sbjct: 109 PSGHLKEPEHPSMWGPVELVGIIAGPVFLLFLIIIIVFLVINYHQRVYHNRQRLDME-DP 167

Query: 85  SADAALQGDPALQD 98
           S +  L  D  LQD
Sbjct: 168 SCEMCLSKDKTLQD 181


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,156,172
Number of Sequences: 37866
Number of extensions: 148431
Number of successful extensions: 630
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 84
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.